[pkgsrc/trunk]: pkgsrc/math/py-lmfit py-lmfit: updated to 0.9.13

[adam <adam%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/f7a566ed96fe
branches:  trunk
changeset: 335203:f7a566ed96fe
user:      adam <adam%pkgsrc.org@localhost>
date:      Sat Jun 15 07:21:21 2019 +0000

description:
py-lmfit: updated to 0.9.13

Version 0.9.13 Release Notes

New features:
Clearer warning message in fit reports when uncertainties should but cannot be estimated, including guesses of which Parameters to examine
SplitLorenztianModel and split_lorentzian function
HTML representations for Parameter, MinimizerResult, and Model so that they can be printed better with Jupyter
support parallelization for differential evolution

Bug fixes:
delay import of matplotlib (and so, the selection of its backend) as late as possible
fix for saving, loading, and reloading ModelResults
fix to leastsq to report the best-fit values, not the values tried last
fix synchronization of all parameter values on Model.guess()
improve deprecation warnings for outdated nan_policy keywords
fix for edge case in gformat()

Project managements:
using pre-commit framework to improve and enforce coding style
added code coverage report to github main page
updated docs, github templates, added several tests.
dropped support and testing for Python 3.4.

diffstat:

 math/py-lmfit/Makefile |   9 ++++++---
 math/py-lmfit/distinfo |  10 +++++-----
 2 files changed, 11 insertions(+), 8 deletions(-)

diffs (42 lines):

diff -r 7327626e07d5 -r f7a566ed96fe math/py-lmfit/Makefile
--- a/math/py-lmfit/Makefile    Sat Jun 15 07:17:31 2019 +0000
+++ b/math/py-lmfit/Makefile    Sat Jun 15 07:21:21 2019 +0000
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.6 2018/12/03 20:41:44 adam Exp $
+# $NetBSD: Makefile,v 1.7 2019/06/15 07:21:21 adam Exp $
 
-DISTNAME=      lmfit-0.9.12
+DISTNAME=      lmfit-0.9.13
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=l/lmfit/}
@@ -12,10 +12,13 @@
 
 DEPENDS+=      ${PYPKGPREFIX}-asteval>=0.9.12:../../math/py-asteval
 DEPENDS+=      ${PYPKGPREFIX}-numpy>=1.10:../../math/py-numpy
-DEPENDS+=      ${PYPKGPREFIX}-scipy>=0.17:../../math/py-scipy
+DEPENDS+=      ${PYPKGPREFIX}-scipy>=0.19:../../math/py-scipy
 DEPENDS+=      ${PYPKGPREFIX}-six>=1.11.0:../../lang/py-six
+DEPENDS+=      ${PYPKGPREFIX}-uncertainties>=3.0:../../math/py-uncertainties
 
 USE_LANGUAGES= # none
 
+PYTHON_VERSIONS_INCOMPATIBLE=  27      # py-scipy
+
 .include "../../lang/python/egg.mk"
 .include "../../mk/bsd.pkg.mk"
diff -r 7327626e07d5 -r f7a566ed96fe math/py-lmfit/distinfo
--- a/math/py-lmfit/distinfo    Sat Jun 15 07:17:31 2019 +0000
+++ b/math/py-lmfit/distinfo    Sat Jun 15 07:21:21 2019 +0000
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.6 2018/12/03 20:41:44 adam Exp $
+$NetBSD: distinfo,v 1.7 2019/06/15 07:21:21 adam Exp $
 
-SHA1 (lmfit-0.9.12.tar.gz) = 7c4a15975d9920c9cf12fd98aca7e7706daf18c9
-RMD160 (lmfit-0.9.12.tar.gz) = dc4bb6835e34fadd8786c1dd760f09df694dba6b
-SHA512 (lmfit-0.9.12.tar.gz) = 09b840955867d64ecf6cb64fcc06b6426a1644b510b34ef27d8cee55a8c65d9002f0e76276f9e05feabed0b49656c5a78cf286e423203769f1de292f01f6ccb0
-Size (lmfit-0.9.12.tar.gz) = 1569497 bytes
+SHA1 (lmfit-0.9.13.tar.gz) = a2693d63ef4be4719c52ff6d2463c53244a7fe53
+RMD160 (lmfit-0.9.13.tar.gz) = e9c725baacf92b9255960e76fd0ed32ba52dd92f
+SHA512 (lmfit-0.9.13.tar.gz) = cd82f190d798e854afaf0087659271b7f1b53ec9a346e7974e81d07d6270493062546d71baeb077c87026185b33d3648a7d901b0805b4a165e52c721782a9234
+Size (lmfit-0.9.13.tar.gz) = 1457657 bytes