[pkgsrc/trunk]: pkgsrc/biology/py-cutadapt biology/py-cutadapt: import py38-c...

[bacon <bacon%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/90bb3b668556
branches:  trunk
changeset: 446383:90bb3b668556
user:      bacon <bacon%pkgsrc.org@localhost>
date:      Mon Feb 08 01:55:23 2021 +0000

description:
biology/py-cutadapt: import py38-cutadapt-3.2

Cutadapt finds and removes adapter sequences, primers, poly-A tails and other
types of unwanted sequence from your high-throughput sequencing reads.

diffstat:

 biology/py-cutadapt/DESCR    |   2 +
 biology/py-cutadapt/Makefile |  19 +++++++++++++++++
 biology/py-cutadapt/PLIST    |  49 ++++++++++++++++++++++++++++++++++++++++++++
 biology/py-cutadapt/distinfo |   6 +++++
 4 files changed, 76 insertions(+), 0 deletions(-)

diffs (92 lines):

diff -r 31d5dc763a60 -r 90bb3b668556 biology/py-cutadapt/DESCR
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/py-cutadapt/DESCR Mon Feb 08 01:55:23 2021 +0000
@@ -0,0 +1,2 @@
+Cutadapt finds and removes adapter sequences, primers, poly-A tails and other
+types of unwanted sequence from your high-throughput sequencing reads.
diff -r 31d5dc763a60 -r 90bb3b668556 biology/py-cutadapt/Makefile
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/py-cutadapt/Makefile      Mon Feb 08 01:55:23 2021 +0000
@@ -0,0 +1,19 @@
+# $NetBSD: Makefile,v 1.1 2021/02/08 01:55:23 bacon Exp $
+
+DISTNAME=      cutadapt-3.2
+PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
+CATEGORIES=    biology
+MASTER_SITES=  ${MASTER_SITE_PYPI:=c/cutadapt/}
+
+MAINTAINER=    bacon%NetBSD.org@localhost
+HOMEPAGE=      https://cutadapt.readthedocs.io/en/stable/
+COMMENT=       Find and remove adapter sequences, primers, poly-A tails, etc
+LICENSE=       mit
+
+DEPENDS+=      ${PYPKGPREFIX}-xopen>=1.0.0:../../devel/py-xopen
+DEPENDS+=      ${PYPKGPREFIX}-dnaio>=0.5.0:../../biology/py-dnaio
+
+PYTHON_SELF_CONFLICT=  yes
+
+.include "../../lang/python/egg.mk"
+.include "../../mk/bsd.pkg.mk"
diff -r 31d5dc763a60 -r 90bb3b668556 biology/py-cutadapt/PLIST
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/py-cutadapt/PLIST Mon Feb 08 01:55:23 2021 +0000
@@ -0,0 +1,49 @@
+@comment $NetBSD: PLIST,v 1.1 2021/02/08 01:55:23 bacon Exp $
+bin/cutadapt
+${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
+${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
+${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
+${PYSITELIB}/${EGG_INFODIR}/entry_points.txt
+${PYSITELIB}/${EGG_INFODIR}/requires.txt
+${PYSITELIB}/${EGG_INFODIR}/top_level.txt
+${PYSITELIB}/cutadapt/__init__.py
+${PYSITELIB}/cutadapt/__init__.pyc
+${PYSITELIB}/cutadapt/__init__.pyo
+${PYSITELIB}/cutadapt/__main__.py
+${PYSITELIB}/cutadapt/__main__.pyc
+${PYSITELIB}/cutadapt/__main__.pyo
+${PYSITELIB}/cutadapt/_align.so
+${PYSITELIB}/cutadapt/_version.py
+${PYSITELIB}/cutadapt/_version.pyc
+${PYSITELIB}/cutadapt/_version.pyo
+${PYSITELIB}/cutadapt/adapters.py
+${PYSITELIB}/cutadapt/adapters.pyc
+${PYSITELIB}/cutadapt/adapters.pyo
+${PYSITELIB}/cutadapt/align.py
+${PYSITELIB}/cutadapt/align.pyc
+${PYSITELIB}/cutadapt/align.pyo
+${PYSITELIB}/cutadapt/filters.py
+${PYSITELIB}/cutadapt/filters.pyc
+${PYSITELIB}/cutadapt/filters.pyo
+${PYSITELIB}/cutadapt/log.py
+${PYSITELIB}/cutadapt/log.pyc
+${PYSITELIB}/cutadapt/log.pyo
+${PYSITELIB}/cutadapt/modifiers.py
+${PYSITELIB}/cutadapt/modifiers.pyc
+${PYSITELIB}/cutadapt/modifiers.pyo
+${PYSITELIB}/cutadapt/parser.py
+${PYSITELIB}/cutadapt/parser.pyc
+${PYSITELIB}/cutadapt/parser.pyo
+${PYSITELIB}/cutadapt/pipeline.py
+${PYSITELIB}/cutadapt/pipeline.pyc
+${PYSITELIB}/cutadapt/pipeline.pyo
+${PYSITELIB}/cutadapt/qualtrim.so
+${PYSITELIB}/cutadapt/report.py
+${PYSITELIB}/cutadapt/report.pyc
+${PYSITELIB}/cutadapt/report.pyo
+${PYSITELIB}/cutadapt/tokenizer.py
+${PYSITELIB}/cutadapt/tokenizer.pyc
+${PYSITELIB}/cutadapt/tokenizer.pyo
+${PYSITELIB}/cutadapt/utils.py
+${PYSITELIB}/cutadapt/utils.pyc
+${PYSITELIB}/cutadapt/utils.pyo
diff -r 31d5dc763a60 -r 90bb3b668556 biology/py-cutadapt/distinfo
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/py-cutadapt/distinfo      Mon Feb 08 01:55:23 2021 +0000
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2021/02/08 01:55:23 bacon Exp $
+
+SHA1 (cutadapt-3.2.tar.gz) = 11b2545862c4e9a655a279f951b15558b1617506
+RMD160 (cutadapt-3.2.tar.gz) = e04f8be21e118c760dc03d80544c1d4f7135f985
+SHA512 (cutadapt-3.2.tar.gz) = 97ab1cadc3bd1585012c0aba916b0031d8b13bff1f1894f4548b6f7bfa20b5f2d598c499664d755a81be57e36fd5c712f36df77cfcd1f2b28a4f27990ee0b56c
+Size (cutadapt-3.2.tar.gz) = 292702 bytes