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[pkgsrc/trunk]: pkgsrc molden: remove
details: https://anonhg.NetBSD.org/pkgsrc/rev/209fb8050763
branches: trunk
changeset: 451065:209fb8050763
user: wiz <wiz%pkgsrc.org@localhost>
date: Sat Apr 24 08:47:53 2021 +0000
description:
molden: remove
Upstream website gone, the distfile was not re-distributable, and
noone had updated it since 2007.
diffstat:
doc/CHANGES-2021 | 3 +-
doc/TODO | 4 +-
misc/Makefile | 3 +-
misc/molden/DESCR | 22 -------
misc/molden/MESSAGE | 7 --
misc/molden/Makefile | 43 --------------
misc/molden/PLIST | 55 ------------------
misc/molden/distinfo | 8 --
misc/molden/patches/patch-aa | 26 --------
misc/molden/patches/patch-ab | 127 -------------------------------------------
10 files changed, 4 insertions(+), 294 deletions(-)
diffs (truncated from 365 to 300 lines):
diff -r 6fc5809668a8 -r 209fb8050763 doc/CHANGES-2021
--- a/doc/CHANGES-2021 Sat Apr 24 08:42:48 2021 +0000
+++ b/doc/CHANGES-2021 Sat Apr 24 08:47:53 2021 +0000
@@ -1,4 +1,4 @@
-$NetBSD: CHANGES-2021,v 1.2320 2021/04/24 08:42:48 wiz Exp $
+$NetBSD: CHANGES-2021,v 1.2321 2021/04/24 08:47:53 wiz Exp $
Changes to the packages collection and infrastructure in 2021:
@@ -3657,3 +3657,4 @@
Updated chat/irssi-icb to 0.15nb7 [nia 2021-04-24]
Updated chat/irssi-xmpp to 0.54nb2 [nia 2021-04-24]
Removed net/radiusd-cistron [wiz 2021-04-24]
+ Removed misc/molden [wiz 2021-04-24]
diff -r 6fc5809668a8 -r 209fb8050763 doc/TODO
--- a/doc/TODO Sat Apr 24 08:42:48 2021 +0000
+++ b/doc/TODO Sat Apr 24 08:47:53 2021 +0000
@@ -1,4 +1,4 @@
-$NetBSD: TODO,v 1.20508 2021/04/23 20:57:33 wiz Exp $
+$NetBSD: TODO,v 1.20509 2021/04/24 08:47:53 wiz Exp $
Suggested new packages
======================
@@ -1035,8 +1035,6 @@
o mixxx-2.2.4
o modular-xorg-xquartz-1.20.9
o modular-xorg-xwayland-21.1.0
- o molden-4.8 [after which PR 40252 can be closed]
- o molden-5.5
o mongo-c-driver-1.17.5.1
o mongo-tools-4.2.13
o mono-nat-1.1.0
diff -r 6fc5809668a8 -r 209fb8050763 misc/Makefile
--- a/misc/Makefile Sat Apr 24 08:42:48 2021 +0000
+++ b/misc/Makefile Sat Apr 24 08:47:53 2021 +0000
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.547 2021/04/07 19:42:25 markd Exp $
+# $NetBSD: Makefile,v 1.548 2021/04/24 08:47:53 wiz Exp $
#
COMMENT= Miscellaneous utilities
@@ -194,7 +194,6 @@
SUBDIR+= mirmon
SUBDIR+= mkcue
SUBDIR+= mmv
-SUBDIR+= molden
SUBDIR+= moreutils
SUBDIR+= most
SUBDIR+= mousetweaks
diff -r 6fc5809668a8 -r 209fb8050763 misc/molden/DESCR
--- a/misc/molden/DESCR Sat Apr 24 08:42:48 2021 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,22 +0,0 @@
-MOLDEN is a package for displaying molecular density. It is tuned to
-the Ab Initio packages GAMESS* and GAUSSIAN. It can read all the
-information it needs from a GAMESS or GAUSSIAN outputfile. In this
-form it has been running on a CONVEX C-120, an APOLLO DN10000, an
-IRIS 4D/70GT, a DECSTATION 5000 and a SUN, and in slightly adapted
-versions on a VAX and a CRAY-YMP. It should run smoothly on most
-Unix machines. See section INSTALLATION GUIDE on how to install
-MOLDEN. (* The GAMESS version referred to here is the european
-version maintaned by M.F. Guest et al not to be confused with the
-american version maintained by M.W. Schmidt et al)
-
-/***************************************************************************
- Copyright (C) 1991 Gijs Schaftenaar
-
- Permission to use, copy this software and its documentation
- for private use is hereby granted to non profit organisations.
-
- This software is provided "as is" without express or implied warranty.
-
- Please cite the author in any work based on this material.
-
- ***************************************************************************
diff -r 6fc5809668a8 -r 209fb8050763 misc/molden/MESSAGE
--- a/misc/molden/MESSAGE Sat Apr 24 08:42:48 2021 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,7 +0,0 @@
-===========================================================================
-$NetBSD: MESSAGE,v 1.4 2014/06/25 08:45:23 jperkin Exp $
-
-Please register at the URL below as a Molden User.
-
-http://www.cmbi.ru.nl/~schaft/molden/form.html
-===========================================================================
diff -r 6fc5809668a8 -r 209fb8050763 misc/molden/Makefile
--- a/misc/molden/Makefile Sat Apr 24 08:42:48 2021 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,43 +0,0 @@
-# $NetBSD: Makefile,v 1.34 2019/11/03 17:04:24 rillig Exp $
-
-DISTNAME= molden4.6
-PKGNAME= ${DISTNAME:S/molden/&-/}
-PKGREVISION= 3
-CATEGORIES= misc # chemistry
-MASTER_SITES= ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/
-
-MAINTAINER= pkgsrc-users%NetBSD.org@localhost
-HOMEPAGE= http://www.cmbi.ru.nl/molden/molden.html
-COMMENT= Displaying MOLecular DENsity
-LICENSE= molden-license
-
-RESTRICTED= Redistributing Molden by unregistered user is prohibited.
-NO_SRC_ON_CDROM= ${RESTRICTED}
-NO_BIN_ON_CDROM= ${RESTRICTED}
-NO_SRC_ON_FTP= ${RESTRICTED}
-NO_BIN_ON_FTP= ${RESTRICTED}
-
-DIST_SUBDIR= ${PKGNAME_NOREV}
-
-MAKE_FILE= makefile
-BUILD_TARGET= molden
-
-USE_LANGUAGES= c fortran77
-
-INSTALLATION_DIRS= bin share/molden/doc share/molden/test share/molden/utils
-
-do-install:
- ${INSTALL_PROGRAM} ${WRKSRC}/molden ${DESTDIR}${PREFIX}/bin
- for d in doc test utils ; do \
- for f in ${WRKSRC}/$${d}/* ; do \
- ${INSTALL_DATA} $${f} ${DESTDIR}${PREFIX}/share/molden/$${d} ; \
- done ; \
- done
-
-.include "../../mk/compiler.mk"
-.if !empty(PKGSRC_COMPILER:Mclang)
-CFLAGS+= -Wno-return-type
-.endif
-
-.include "../../graphics/MesaLib/buildlink3.mk"
-.include "../../mk/bsd.pkg.mk"
diff -r 6fc5809668a8 -r 209fb8050763 misc/molden/PLIST
--- a/misc/molden/PLIST Sat Apr 24 08:42:48 2021 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,55 +0,0 @@
-@comment $NetBSD: PLIST,v 1.3 2009/06/14 18:07:27 joerg Exp $
-bin/molden
-share/molden/doc/figures.ps.Z
-share/molden/doc/manual.ps.Z
-share/molden/doc/manual.txt.Z
-share/molden/test/adf.molf
-share/molden/test/ambfor_amber.xyz
-share/molden/test/ambfor_gaff.xyz
-share/molden/test/ampac.arc
-share/molden/test/ampac.test
-share/molden/test/bucky.xyz
-share/molden/test/chemx.test
-share/molden/test/complex2.out
-share/molden/test/cpeptide.gro
-share/molden/test/esp.test
-share/molden/test/esp.txt
-share/molden/test/esp.xyz
-share/molden/test/fragment
-share/molden/test/gamess_uk.freq
-share/molden/test/gamess_uk.input
-share/molden/test/gamess_uk.test1
-share/molden/test/gamess_uk.test2
-share/molden/test/gamess_us.h2o_631g_opt.out
-share/molden/test/gamess_us.irc
-share/molden/test/gamess_us_uhf_opt
-share/molden/test/gaussian.freq
-share/molden/test/gaussian.input
-share/molden/test/gaussian.test
-share/molden/test/jaguar.cube
-share/molden/test/molden.ogl
-share/molden/test/mopac.freq
-share/molden/test/mopac.test
-share/molden/test/pdb.test
-share/molden/test/pdb.test.omap
-share/molden/test/qchem.test
-share/molden/test/reacpth.xyz
-share/molden/test/shelx.ins
-share/molden/test/surface.molf
-share/molden/test/test.fdat
-share/molden/test/test.mol2
-share/molden/test/test_homo.cube
-share/molden/test/tinker_charmm.xyz
-share/molden/test/tinker_mm3.xyz
-share/molden/test/uracil.fdat
-share/molden/test/uracil_gauss.out
-share/molden/test/vamp.test
-share/molden/utils/INFO
-share/molden/utils/ch_backspace
-share/molden/utils/ch_mxcon
-share/molden/utils/ch_par
-share/molden/utils/colors
-share/molden/utils/ircextract.awk
-share/molden/utils/molden
-share/molden/utils/multi_vrml.csh
-share/molden/utils/multi_vrml_orbitals.csh
diff -r 6fc5809668a8 -r 209fb8050763 misc/molden/distinfo
--- a/misc/molden/distinfo Sat Apr 24 08:42:48 2021 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,8 +0,0 @@
-$NetBSD: distinfo,v 1.11 2017/03/23 17:06:56 joerg Exp $
-
-SHA1 (molden-4.6/molden4.6.tar.gz) = 83f17d2079b83cc790689485c139301407313463
-RMD160 (molden-4.6/molden4.6.tar.gz) = b75ec4c23001695044e82d9f8b8542cb45b3009c
-SHA512 (molden-4.6/molden4.6.tar.gz) = 90b0569028e47ae130692c220ed1d49e270b7cce6a9e762e3e42db0c832eaa4fd70d1c51d61ca956a412ae068e8c29b36ba102a379fa80c553bf3dcef00b49e6
-Size (molden-4.6/molden4.6.tar.gz) = 2786093 bytes
-SHA1 (patch-aa) = 6d56ac7e5aa940004b6758164b5eaedbf9694b3c
-SHA1 (patch-ab) = a0dad736707c3228f4934e4888ae0d08cbf61338
diff -r 6fc5809668a8 -r 209fb8050763 misc/molden/patches/patch-aa
--- a/misc/molden/patches/patch-aa Sat Apr 24 08:42:48 2021 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,26 +0,0 @@
-$NetBSD: patch-aa,v 1.3 2015/03/21 19:27:56 joerg Exp $
-
---- makefile.orig 2008-06-24 13:44:16.000000000 +0000
-+++ makefile
-@@ -13,8 +13,7 @@
- # Disregard compiler warnings on rdmolf.f
- #
- CC = cc
--LIBS = -lX11 -lm
--LIBSG = -L/usr/X11R6/lib -lGLU -lGL -lXmu -lX11 -lm
-+LIBS = -L${X11BASE}/lib -R${X11BASE}/lib -lX11 -lm
-
- # Silicon Graphics
- #CFLAGS = -c -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0
-@@ -52,10 +51,9 @@ LIBSG = -L/usr/X11R6/lib -lGLU -lGL -lXm
- # with GCC4.0 or higher replace the line with:
- # 'external gfortran_iargc'
- #
--CFLAGS = -c -I/usr/X11R6/include -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0
-+CFLAGS += -c -I${X11BASE}/include -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0
- FC = g77
- FFLAGS =
--LIBS = -L/usr/X11R6/lib -lX11 -lm
- LDR = g77
- # 64 bit machines:
- #LIBS = -L/usr/X11R6/lib64 -lX11 -lm
diff -r 6fc5809668a8 -r 209fb8050763 misc/molden/patches/patch-ab
--- a/misc/molden/patches/patch-ab Sat Apr 24 08:42:48 2021 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,127 +0,0 @@
-$NetBSD: patch-ab,v 1.2 2015/03/21 19:27:56 joerg Exp $
-
---- xwin.c.orig 2008-08-30 11:59:22.000000000 +0000
-+++ xwin.c
-@@ -20,10 +20,6 @@
- #include <GL/gl.h>
- #include <GL/glu.h>
- #endif
--#if defined(DARWIN) || defined(FREEBSD)
--#else
--#include <malloc.h>
--#endif
- #endif
-
- #include <stdio.h>
-@@ -3360,7 +3356,7 @@ static int *ispoptm;
- static int *icopth;
- static int *icoptl;
- static int *icoptm;
--static int linkat = 0;
-+static int my_linkat = 0;
-
- static QBOXSTRU IANZboxes[MAXAT];
- static QBOXSTRU IZboxes[MAXAT][4];
-@@ -17466,7 +17462,7 @@ int i;
- if (ioniom == 1) {
- int ism, isl;
-
-- linkat = 0;
-+ my_linkat = 0;
-
- /* Counting the number of Link atoms between H and lower
- levels*/
-@@ -17479,10 +17475,10 @@ int i;
- if (ionij != 0) continue;
- nconn = xyz.iconn[j*(MXCON+1)];
- for (k=1;k<=nconn;k++) {
-- if (xyz.ityp[xyz.iconn[j*(MXCON+1)+k]-1]/10000 > 0) linkat++;
-+ if (xyz.ityp[xyz.iconn[j*(MXCON+1)+k]-1]/10000 > 0) my_linkat++;
- }
- }
-- linkat += 20000;
-+ my_linkat += 20000;
- *itotc = *icopth;
- *imult = *ispopth;
- if (CheckChargeMult()) {
-@@ -17503,7 +17499,7 @@ int i;
-
- } else if (ioniom == 2) {
-
-- linkat = 0;
-+ my_linkat = 0;
-
- /* Counting the number of Link atoms between H and
- lower levels*/
-@@ -17513,10 +17509,10 @@ int i;
- if(ionij != 0) continue;
- nconn = xyz.iconn[j*(MXCON+1)];
- for (k=1;k<=nconn;k++) {
-- if (xyz.ityp[xyz.iconn[j*(MXCON+1)+k]-1]/10000 > 0) linkat++;
-+ if (xyz.ityp[xyz.iconn[j*(MXCON+1)+k]-1]/10000 > 0) my_linkat++;
- }
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