[pkgsrc/trunk]: pkgsrc/biology/fastDNAml Update fastDNAml to version 1.2.2. ...

[ben <ben%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/70693e9a7675
branches:  trunk
changeset: 479557:70693e9a7675
user:      ben <ben%pkgsrc.org@localhost>
date:      Mon Aug 16 23:45:59 2004 +0000

description:
Update fastDNAml to version 1.2.2.  Notable changes include:
* Now under GPL
* Convert to function definitions with parameter type lists
* General code clean-up

diffstat:

 biology/fastDNAml/Makefile |  29 ++++++++++-------------------
 biology/fastDNAml/distinfo |   6 +++---
 2 files changed, 13 insertions(+), 22 deletions(-)

diffs (66 lines):

diff -r d899c4d130e5 -r 70693e9a7675 biology/fastDNAml/Makefile
--- a/biology/fastDNAml/Makefile        Mon Aug 16 23:36:50 2004 +0000
+++ b/biology/fastDNAml/Makefile        Mon Aug 16 23:45:59 2004 +0000
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.5 2004/01/29 13:41:05 grant Exp $
+# $NetBSD: Makefile,v 1.6 2004/08/16 23:45:59 ben Exp $
 
-DISTNAME=      fastDNAml_1.2.1
-PKGNAME=       fastDNAml-1.2.1
+DISTNAME=      fastDNAml_1.2.2
+PKGNAME=       fastDNAml-1.2.2
 CATEGORIES=    biology
 MASTER_SITES=  http://geta.life.uiuc.edu/~gary/programs/fastDNAml/
 
@@ -9,22 +9,12 @@
 HOMEPAGE=      http://geta.life.uiuc.edu/~gary/programs/fastDNAml.html
 COMMENT=       Program derived from Joseph Felsenstein's version 3.3 DNAML
 
-RESTRICTED=    "No commercial distribution without a royalty agreement with the author"
-NO_SRC_ON_CDROM=       ${RESTRICTED}
-NO_BIN_ON_CDROM=       ${RESTRICTED}
-
-WRKSRC=                ${WRKDIR}/${DISTNAME}
-ALL_TARGET=    fastDNAml
+WRKSRC=                ${WRKDIR}/${DISTNAME}/source
 
-MAKE_FLAGS+=   CC="${CC}"
-MAKE_FLAGS+=   LDFLAGS=-lm
-
-do-build:
-       @cd ${WRKSRC}/source && \
-               ${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} ${ALL_TARGET}
+MAKE_FLAGS+=   CC=${CC}
 
 do-install:
-       ${INSTALL_PROGRAM} ${WRKSRC}/source/fastDNAml ${PREFIX}/bin
+       ${INSTALL_PROGRAM} ${WRKSRC}/fastDNAml ${PREFIX}/bin
 .for SCRIPT in ae2dnaml bootstrap categories categories_file           \
                checkpoint_summary clean_checkpoints clean_jumbles      \
                dnaml_progress fastDNAml_boot fastDNAml_loop            \
@@ -33,10 +23,11 @@
                quickadd restart scores transition treefile             \
                treefile2prolog trees2NEXUS trees2prolog userlengths    \
                usertree usertrees weights weights_categories
-       ${INSTALL_SCRIPT} ${WRKSRC}/scripts/${SCRIPT} ${PREFIX}/bin
+       ${INSTALL_SCRIPT} ${WRKDIR}/${DISTNAME}/scripts/${SCRIPT} ${PREFIX}/bin
 .endfor
        ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/fastDNAml
-       ${INSTALL_DATA} ${WRKSRC}/docs/fastDNAml_doc_1.2.txt ${PREFIX}/share/doc/fastDNAml
-       ${INSTALL_DATA} ${WRKSRC}/docs/fastDNAml_scripts.txt ${PREFIX}/share/doc/fastDNAml
+.for DOC in fastDNAml_doc_1.2.txt fastDNAml_scripts.txt
+       ${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/docs/${DOC} ${PREFIX}/share/doc/fastDNAml
+.endfor
 
 .include "../../mk/bsd.pkg.mk"
diff -r d899c4d130e5 -r 70693e9a7675 biology/fastDNAml/distinfo
--- a/biology/fastDNAml/distinfo        Mon Aug 16 23:36:50 2004 +0000
+++ b/biology/fastDNAml/distinfo        Mon Aug 16 23:45:59 2004 +0000
@@ -1,4 +1,4 @@
-$NetBSD: distinfo,v 1.2 2001/04/19 16:02:24 agc Exp $
+$NetBSD: distinfo,v 1.3 2004/08/16 23:45:59 ben Exp $
 
-SHA1 (fastDNAml_1.2.1.tar.gz) = f61a11f69746ad80e2009594f229db331cfbb8d0
-Size (fastDNAml_1.2.1.tar.gz) = 63110 bytes
+SHA1 (fastDNAml_1.2.2.tar.gz) = 78197cbd760163f65085ac80c36d4286a1f29e34
+Size (fastDNAml_1.2.2.tar.gz) = 70005 bytes