[pkgsrc/trunk]: pkgsrc/biology/glimmer Update to glimmer-2.13, thanks to cngo...

[ben <ben%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/0ee411b44c0e
branches:  trunk
changeset: 479662:0ee411b44c0e
user:      ben <ben%pkgsrc.org@localhost>
date:      Thu Aug 19 16:47:01 2004 +0000

description:
Update to glimmer-2.13, thanks to cngo%nmsu.edu@localhost.

CHANGELOG, 12 October 2003
    add -X option to glimmer2, to allow orfs extending off ends of
    sequence to be scored.  Also fix bug affecting -p and -o options
    when user chose zero overlap.

diffstat:

 biology/glimmer/Makefile |  8 ++++----
 biology/glimmer/distinfo |  6 +++---
 2 files changed, 7 insertions(+), 7 deletions(-)

diffs (37 lines):

diff -r d28cb23af6ee -r 0ee411b44c0e biology/glimmer/Makefile
--- a/biology/glimmer/Makefile  Thu Aug 19 15:32:10 2004 +0000
+++ b/biology/glimmer/Makefile  Thu Aug 19 16:47:01 2004 +0000
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.4 2004/04/11 04:02:23 snj Exp $
+# $NetBSD: Makefile,v 1.5 2004/08/19 16:47:01 ben Exp $
 #
 
-DISTNAME=              glimmer212
-PKGNAME=               glimmer-2.12
+DISTNAME=              glimmer213
+PKGNAME=               glimmer-2.13
 CATEGORIES=            biology
 MASTER_SITES=          ftp://ftp.tigr.org/pub/software/Glimmer/
 
@@ -11,7 +11,7 @@
 COMMENT=               System for finding genes in microbial DNA
 
 USE_BUILDLINK3=                yes
-WRKSRC=                 ${WRKDIR}/glimmer2.12
+WRKSRC=                 ${WRKDIR}/glimmer2.13
 
 do-install:
 .for PROGRAM in adjust anomaly build-icm check codon-usage compare-lists \
diff -r d28cb23af6ee -r 0ee411b44c0e biology/glimmer/distinfo
--- a/biology/glimmer/distinfo  Thu Aug 19 15:32:10 2004 +0000
+++ b/biology/glimmer/distinfo  Thu Aug 19 16:47:01 2004 +0000
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.2 2003/10/07 18:20:15 jschauma Exp $
+$NetBSD: distinfo,v 1.3 2004/08/19 16:47:01 ben Exp $
 
-SHA1 (glimmer212.tar.gz) = f2291c3b9024c56b884d6dcab032cb36f54074f6
-Size (glimmer212.tar.gz) = 79431 bytes
+SHA1 (glimmer213.tar.gz) = 772752c3c1543066e4c156e5ec0a2e4f0a24c688
+Size (glimmer213.tar.gz) = 79858 bytes
 SHA1 (patch-aa) = ceb45f887c32e91bd96b9d2c8dae39c9cc6fc658
 SHA1 (patch-ab) = e2afaa9ff8e0d4a2647a77bbf7e1ba4012d53061