[pkgsrc/trunk]: pkgsrc/biology/rasmol update RasMol to 2.7.3

To: pkgsrc-changes-hg%NetBSD.org@localhost
Subject: [pkgsrc/trunk]: pkgsrc/biology/rasmol update RasMol to 2.7.3
From: perry <perry%pkgsrc.org@localhost>
Date: Thu, 14 Oct 2021 02:22:17 +0000
details:   https://anonhg.NetBSD.org/pkgsrc/rev/06ec74171a84
branches:  trunk
changeset: 500367:06ec74171a84
user:      perry <perry%pkgsrc.org@localhost>
date:      Fri Oct 07 15:13:21 2005 +0000

description:
update RasMol to 2.7.3

Extensive changelist is at:
     http://www.bernstein-plus-sons.com/software/rasmol/

diffstat:

 biology/rasmol/Makefile         |  11 +++++------
 biology/rasmol/PLIST            |   7 ++++---
 biology/rasmol/distinfo         |  14 +++++++-------
 biology/rasmol/patches/patch-aa |  32 ++++++++++++++++++--------------
 biology/rasmol/patches/patch-ab |   8 ++++----
 biology/rasmol/patches/patch-ac |   8 ++++----
 6 files changed, 42 insertions(+), 38 deletions(-)

diffs (160 lines):

diff -r 6a05f3684d12 -r 06ec74171a84 biology/rasmol/Makefile
--- a/biology/rasmol/Makefile   Fri Oct 07 13:11:30 2005 +0000
+++ b/biology/rasmol/Makefile   Fri Oct 07 15:13:21 2005 +0000
@@ -1,10 +1,9 @@
-# $NetBSD: Makefile,v 1.21 2005/07/15 18:27:48 jlam Exp $
+# $NetBSD: Makefile,v 1.22 2005/10/07 15:13:21 perry Exp $
 
-DISTNAME=      RasMol_2.7.1
-PKGNAME=       rasmol-2.7.1
-PKGREVISION=   1
+DISTNAME=      RasMol_2.7.3
+PKGNAME=       rasmol-2.7.3
 CATEGORIES=    biology
-MASTER_SITES=  ftp://ftp.bernstein-plus-sons.com/software/
+MASTER_SITES=  http://www.bernstein-plus-sons.com/software/
 
 MAINTAINER=    tech-pkg%NetBSD.org@localhost
 HOMEPAGE=      http://www.bernstein-plus-sons.com/software/rasmol/
@@ -34,12 +33,12 @@
 post-patch:
        ${LN} -sf ${WRKDIR}/${DISTNAME}/doc  ${WRKSRC}
        ${LN} -sf ${WRKDIR}/${DISTNAME}/data ${WRKSRC}
-       ${GUNZIP_CMD} ${WRKDIR}/${DISTNAME}/doc/rasmol.1.gz
        cd ${WRKSRC} && ${SED} "s#@@PREFIX@@#${PREFIX}#" rasmol.h > \
                rasmol.h.new && ${MV} rasmol.h.new rasmol.h
 
 post-install:
        ${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/NOTICE ${PREFIX}/share/doc/rasmol
+       ${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/doc/rasmol.1 ${PREFIX}/man/man1
        for doc in manualA4.pdf.gz manualA4.ps.gz manualA4.rtf.gz       \
                        manualUS.pdf.gz manualUS.ps.gz manualUS.rtf.gz  \
                        refcardA4.pdf.gz refcardA4.ps.gz                \
diff -r 6a05f3684d12 -r 06ec74171a84 biology/rasmol/PLIST
--- a/biology/rasmol/PLIST      Fri Oct 07 13:11:30 2005 +0000
+++ b/biology/rasmol/PLIST      Fri Oct 07 15:13:21 2005 +0000
@@ -1,6 +1,7 @@
-@comment $NetBSD: PLIST,v 1.2 2003/02/25 03:37:23 jschauma Exp $
+@comment $NetBSD: PLIST,v 1.3 2005/10/07 15:13:21 perry Exp $
 bin/rasmol
-share/doc/rasmol/rasmol.hlp
+man/cat1/rasmol.0
+man/man1/rasmol.1
 share/doc/rasmol/NOTICE
 share/doc/rasmol/manualA4.pdf.gz
 share/doc/rasmol/manualA4.ps.gz
@@ -8,6 +9,7 @@
 share/doc/rasmol/manualUS.pdf.gz
 share/doc/rasmol/manualUS.ps.gz
 share/doc/rasmol/manualUS.rtf.gz
+share/doc/rasmol/rasmol.hlp
 share/doc/rasmol/refcardA4.pdf.gz
 share/doc/rasmol/refcardA4.ps.gz
 share/doc/rasmol/refcardA4.rtf.gz
@@ -27,4 +29,3 @@
 share/examples/rasmol/asprin.alc
 share/examples/rasmol/pdb2mcg.ent
 @dirrm share/examples/rasmol
-${IMAKE_MAN_DIR}/rasmol.${IMAKE_MANNEWSUFFIX}
diff -r 6a05f3684d12 -r 06ec74171a84 biology/rasmol/distinfo
--- a/biology/rasmol/distinfo   Fri Oct 07 13:11:30 2005 +0000
+++ b/biology/rasmol/distinfo   Fri Oct 07 15:13:21 2005 +0000
@@ -1,8 +1,8 @@
-$NetBSD: distinfo,v 1.3 2005/02/22 21:28:56 agc Exp $
+$NetBSD: distinfo,v 1.4 2005/10/07 15:13:21 perry Exp $
 
-SHA1 (RasMol_2.7.1.tar.gz) = 5960b1c397aa13824e6524e97f80493e468f19e6
-RMD160 (RasMol_2.7.1.tar.gz) = 6f34a8cd700dc8e0055009ee61f7fd362666aae3
-Size (RasMol_2.7.1.tar.gz) = 3482749 bytes
-SHA1 (patch-aa) = 627dbdee004e58451a76a9394197de5c39dd0ae4
-SHA1 (patch-ab) = c9f829a2c0873dc1eb156efff57ea69f90bdd442
-SHA1 (patch-ac) = 0ec2fbf59a92398e3b514637b686cfff80ee7a19
+SHA1 (RasMol_2.7.3.tar.gz) = 25790653566a1a1971bb3e06964288362d588154
+RMD160 (RasMol_2.7.3.tar.gz) = 3203996bc55930e1e3b63f8e64734ccb77a986fc
+Size (RasMol_2.7.3.tar.gz) = 8862988 bytes
+SHA1 (patch-aa) = aeb57ef20033e9103c65fced9625a9dbb49ca573
+SHA1 (patch-ab) = f289b9299de47022f4310dc56e4c6b1b6e97e887
+SHA1 (patch-ac) = bbbbf90bac91eeb1347fe8170c0351d31f07afcd
diff -r 6a05f3684d12 -r 06ec74171a84 biology/rasmol/patches/patch-aa
--- a/biology/rasmol/patches/patch-aa   Fri Oct 07 13:11:30 2005 +0000
+++ b/biology/rasmol/patches/patch-aa   Fri Oct 07 15:13:21 2005 +0000
@@ -1,13 +1,17 @@
-$NetBSD: patch-aa,v 1.1.1.1 2000/03/13 04:42:00 wiz Exp $
+$NetBSD: patch-aa,v 1.2 2005/10/07 15:13:21 perry Exp $
 
---- Imakefile.orig     Tue Jul  6 01:48:28 1999
-+++ Imakefile  Mon Mar 13 04:25:00 2000
-@@ -60,11 +60,12 @@
- 
- # DEPTHDEF = -DTHIRTYTWOBIT
+--- Imakefile.orig     2005-10-06 17:57:49.000000000 -0400
++++ Imakefile  2005-10-06 18:01:41.000000000 -0400
+@@ -92,7 +92,7 @@
+   DEPTHDEF = -DTHIRTYTWOBIT
+ #endif
+ #else
+-DEPTHDEF = -DTHIRTYTWOBIT
++# DEPTHDEF = -DTHIRTYTWOBIT
  # DEPTHDEF = -DSIXTEENBIT
--DEPTHDEF = -DEIGHTBIT
-+# DEPTHDEF = -DEIGHTBIT
+ # DEPTHDEF = -DEIGHTBIT
+ #endif
+@@ -108,7 +108,8 @@
  
  # RasMol's on-line help direcory
  #   e.g. /usr/local/lib/rasmol/rasmol.hlp
@@ -17,15 +21,15 @@
  
  
  
-@@ -104,8 +105,9 @@
+@@ -176,8 +177,9 @@
  ComplexProgramTarget(rasmol)
  MakeDirectories(install,$(RASMOLDIR))
- InstallNonExec(rasmol.hlp,$(RASMOLDIR))
--InstallNonExec(data/1crn.pdb,$(RASMOLDIR))
--InstallNonExec(data/3cro.pdb,$(RASMOLDIR))
+ InstallNonExec(../doc/rasmol.hlp,$(RASMOLDIR))
+-InstallNonExec(../data/1crn.pdb,$(RASMOLDIR))
+-InstallNonExec(../data/3cro.pdb,$(RASMOLDIR))
 +MakeDirectories(install,$(RASMOLDATADIR))
 +InstallNonExec(data/1crn.pdb,$(RASMOLDATADIR))
 +InstallNonExec(data/3cro.pdb,$(RASMOLDATADIR))
  
- rasmol.man::  doc/rasmol.1
-               ln -s doc/rasmol.1 rasmol.man
+ rasmol.man::  ../doc/rasmol.1
+               ln -s ../doc/rasmol.1 rasmol.man
diff -r 6a05f3684d12 -r 06ec74171a84 biology/rasmol/patches/patch-ab
--- a/biology/rasmol/patches/patch-ab   Fri Oct 07 13:11:30 2005 +0000
+++ b/biology/rasmol/patches/patch-ab   Fri Oct 07 15:13:21 2005 +0000
@@ -1,8 +1,8 @@
-$NetBSD: patch-ab,v 1.1.1.1 2000/03/13 04:42:00 wiz Exp $
+$NetBSD: patch-ab,v 1.2 2005/10/07 15:13:21 perry Exp $
 
---- cif_ctonum.c.orig  Thu Aug  5 23:11:05 1999
-+++ cif_ctonum.c       Thu Aug  5 23:11:11 1999
-@@ -168,7 +168,6 @@
+--- cif_ctonum.c.orig  2005-10-06 18:05:48.000000000 -0400
++++ cif_ctonum.c       2005-10-06 18:07:54.000000000 -0400
+@@ -173,7 +173,6 @@
  extern "C" {
  #endif
  
diff -r 6a05f3684d12 -r 06ec74171a84 biology/rasmol/patches/patch-ac
--- a/biology/rasmol/patches/patch-ac   Fri Oct 07 13:11:30 2005 +0000
+++ b/biology/rasmol/patches/patch-ac   Fri Oct 07 15:13:21 2005 +0000
@@ -1,8 +1,8 @@
-$NetBSD: patch-ac,v 1.1.1.1 2000/03/13 04:42:00 wiz Exp $
+$NetBSD: patch-ac,v 1.2 2005/10/07 15:13:21 perry Exp $
 
---- rasmol.h.orig      Tue Jul  6 01:56:01 1999
-+++ rasmol.h   Mon Mar 13 05:00:32 2000
-@@ -103,7 +103,7 @@
+--- rasmol.h.orig      2005-10-06 18:09:35.000000000 -0400
++++ rasmol.h   2005-10-06 18:10:05.000000000 -0400
+@@ -110,7 +110,7 @@
  #endif
  
  #if !defined(IBMPC) && !defined(APPLEMAC) && !defined(VMS)
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