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[pkgsrc/trunk]: pkgsrc/biology/azara Import azara from pkgsrc-wip. Packaged ...



details:   https://anonhg.NetBSD.org/pkgsrc/rev/4f86fc8e2fee
branches:  trunk
changeset: 502480:4f86fc8e2fee
user:      minskim <minskim%pkgsrc.org@localhost>
date:      Sat Nov 05 01:47:41 2005 +0000

description:
Import azara from pkgsrc-wip.  Packaged by David Price.

Azara is a suite of programs to process and view NMR data.

diffstat:

 biology/azara/DESCR            |    1 +
 biology/azara/Makefile         |   37 +++++++
 biology/azara/PLIST            |   26 +++++
 biology/azara/distinfo         |    7 +
 biology/azara/patches/patch-aa |   31 ++++++
 biology/azara/patches/patch-ab |  197 +++++++++++++++++++++++++++++++++++++++++
 6 files changed, 299 insertions(+), 0 deletions(-)

diffs (truncated from 323 to 300 lines):

diff -r 7cfbea2d1579 -r 4f86fc8e2fee biology/azara/DESCR
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/azara/DESCR       Sat Nov 05 01:47:41 2005 +0000
@@ -0,0 +1,1 @@
+Azara is a suite of programs to process and view NMR data.
diff -r 7cfbea2d1579 -r 4f86fc8e2fee biology/azara/Makefile
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/azara/Makefile    Sat Nov 05 01:47:41 2005 +0000
@@ -0,0 +1,37 @@
+# $NetBSD: Makefile,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $
+#
+
+DISTNAME=              azara-2.7-src
+PKGNAME=               azara-2.7
+CATEGORIES=            biology
+MASTER_SITES=          ftp://www.bio.cam.ac.uk/pub/azara/
+
+MAINTAINER=            mchittur%cs.nmsu.edu@localhost
+HOMEPAGE=              http://www.bio.cam.ac.uk/azara/
+COMMENT=               Programs to process and view NMR data
+
+WRKSRC=                        ${WRKDIR}/azara-2.7
+
+MAKEFILE=              makefile
+
+do-install:
+.for PROG in azara \
+               bin2asc \
+               combine connect contours \
+               deflate \
+               extract \
+               float2int \
+               int2float \
+               look_at look_byte look_for \
+               mat2par \
+               par2mat peak_find peak_fit plot1 plot2 process project \
+               reflate \
+               slides swap \
+               unblock viewer
+               ${CP} ${WRKSRC}/bin/${PROG} ${PREFIX}/bin
+.endfor
+
+.include "../../graphics/glut/buildlink3.mk"
+.include "../../mk/motif.buildlink3.mk"
+.include "../../mk/x11.buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff -r 7cfbea2d1579 -r 4f86fc8e2fee biology/azara/PLIST
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/azara/PLIST       Sat Nov 05 01:47:41 2005 +0000
@@ -0,0 +1,26 @@
+@comment $NetBSD: PLIST,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $
+bin/azara
+bin/bin2asc
+bin/combine
+bin/connect
+bin/contours
+bin/deflate
+bin/extract
+bin/float2int
+bin/int2float
+bin/look_at
+bin/look_byte
+bin/look_for
+bin/mat2par
+bin/par2mat
+bin/peak_find
+bin/peak_fit
+bin/plot1
+bin/plot2
+bin/process
+bin/project
+bin/reflate
+bin/slides
+bin/swap
+bin/unblock
+bin/viewer
diff -r 7cfbea2d1579 -r 4f86fc8e2fee biology/azara/distinfo
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/azara/distinfo    Sat Nov 05 01:47:41 2005 +0000
@@ -0,0 +1,7 @@
+$NetBSD: distinfo,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $
+
+SHA1 (azara-2.7-src.tar.gz) = 53caa85953f700cdc4ec9ef26d2bb7d9448b77b0
+RMD160 (azara-2.7-src.tar.gz) = 2426102dbb87984f88ec1266b72d2e307484af0c
+Size (azara-2.7-src.tar.gz) = 565272 bytes
+SHA1 (patch-aa) = 1066c1e1b070020bbdd18439b27e15d359dd5e69
+SHA1 (patch-ab) = 46e512fba5b00cb36cd2b2d50db4919875124309
diff -r 7cfbea2d1579 -r 4f86fc8e2fee biology/azara/patches/patch-aa
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/azara/patches/patch-aa    Sat Nov 05 01:47:41 2005 +0000
@@ -0,0 +1,31 @@
+$NetBSD: patch-aa,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $
+
+--- ENVIRONMENT.orig   2002-11-01 07:10:11.000000000 -0700
++++ ENVIRONMENT
+@@ -40,14 +40,14 @@ XPM_FLAG = -DUSE_XPM
+ XPM_LIB = -lXpm
+ 
+ # X11 libraries
+-X11_LIB = -lX11 -lPW
++#X11_LIB = -lX11 -lPW
+ # non-SGI platforms do not need PW
+-#X11_LIB = -lX11
++X11_LIB = -lX11
+ # below uses shared libraries
+ #X11_LIB = -lX11_s -lPW
+ 
+ # Motif libraries
+-MOTIF_LIB = -lXm -lXt
++MOTIF_LIB =  -L${X11BASE}/lib -Wl,-R${X11BASE}/lib -L${PREFIX}/lib -Wl,-R${PREFIX}/lib -lXm -lXt
+ # below uses shared libraries
+ #MOTIF_LIB = -lXm_s -lXt_s
+ 
+@@ -58,7 +58,7 @@ MOTIF_LIB = -lXm -lXt
+ #GL_LIB_DIR = $(X11_LIB_DIR) -I/usr/local/mesa/lib
+ 
+ # GL libraries
+-GL_LIB = -lglut -lGLU -lGL -lXmu -lX11 -lXext
++GL_LIB = -L${X11BASE}/lib -Wl,-R${X11BASE}/lib -L${PREFIX}/lib -Wl,-R${PREFIX}/lib -lglut -lGLU -lGL -lXmu -lXi -lX11 -lXext
+ 
+ # set up ENDIAN_FLAG as required
+ #   WRITE_ENDIAN_PAR if want endianess written to par file
diff -r 7cfbea2d1579 -r 4f86fc8e2fee biology/azara/patches/patch-ab
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/biology/azara/patches/patch-ab    Sat Nov 05 01:47:41 2005 +0000
@@ -0,0 +1,197 @@
+$NetBSD: patch-ab,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $
+
+--- help/makefile.orig 2002-11-01 05:27:27.000000000 -0700
++++ help/makefile
+@@ -37,97 +37,97 @@ globals:
+ .c.o:;  $(CC) -c $(CFLAGS) $<
+ 
+ hlp:
+-      txt2hlp azara
+-      txt2hlp combine
+-      txt2hlp components
+-      txt2hlp connect
+-      txt2hlp contours
+-      txt2hlp deflate
+-      txt2hlp extract
+-      txt2hlp peak_find
+-      txt2hlp peak_fit
+-      txt2hlp plot1
+-      txt2hlp plot2
+-      txt2hlp process
+-      txt2hlp project
+-      txt2hlp slides
+-      txt2hlp reflate
+-      txt2hlp unblock
+-      txt2hlp viewer
+-      txt2hlp plot2/baseline
+-      txt2hlp plot2/data
+-      txt2hlp plot2/extract
+-      txt2hlp plot2/levels
+-      txt2hlp plot2/object
+-      txt2hlp plot2/output
+-      txt2hlp plot2/peak
+-      txt2hlp plot2/peaks
+-      txt2hlp plot2/phase
+-      txt2hlp plot2/property
+-      txt2hlp plot2/region
+-      txt2hlp plot2/rowcol
+-      txt2hlp plot2/save
+-      txt2hlp plot2/tracking
+-      txt2hlp plot1/button
+-      txt2hlp plot1/data
+-      txt2hlp plot1/object
+-      txt2hlp plot1/output
+-      txt2hlp plot1/property
+-      txt2hlp plot1/region
+-      txt2hlp plot1/slider
+-      txt2hlp plot1/text
++      ./txt2hlp azara
++      ./txt2hlp combine
++      ./txt2hlp components
++      ./txt2hlp connect
++      ./txt2hlp contours
++      ./txt2hlp deflate
++      ./txt2hlp extract
++      ./txt2hlp peak_find
++      ./txt2hlp peak_fit
++      ./txt2hlp plot1
++      ./txt2hlp plot2
++      ./txt2hlp process
++      ./txt2hlp project
++      ./txt2hlp slides
++      ./txt2hlp reflate
++      ./txt2hlp unblock
++      ./txt2hlp viewer
++      ./txt2hlp plot2/baseline
++      ./txt2hlp plot2/data
++      ./txt2hlp plot2/extract
++      ./txt2hlp plot2/levels
++      ./txt2hlp plot2/object
++      ./txt2hlp plot2/output
++      ./txt2hlp plot2/peak
++      ./txt2hlp plot2/peaks
++      ./txt2hlp plot2/phase
++      ./txt2hlp plot2/property
++      ./txt2hlp plot2/region
++      ./txt2hlp plot2/rowcol
++      ./txt2hlp plot2/save
++      ./txt2hlp plot2/tracking
++      ./txt2hlp plot1/button
++      ./txt2hlp plot1/data
++      ./txt2hlp plot1/object
++      ./txt2hlp plot1/output
++      ./txt2hlp plot1/property
++      ./txt2hlp plot1/region
++      ./txt2hlp plot1/slider
++      ./txt2hlp plot1/text
+ 
+ html:
+-      txt2html azara
+-      txt2html combine
+-      txt2html components
+-      txt2html connect
+-      txt2html contours
+-      txt2html deflate
+-      txt2html extract
+-      txt2html peak_find
+-      txt2html peak_fit
+-      txt2html plot1
+-      txt2html plot2
+-      txt2html process
+-      txt2html project
+-      txt2html slides
+-      txt2html reflate
+-      txt2html unblock
+-      txt2html viewer
+-      txt2html plot2/baseline
+-      txt2html plot2/data
+-      txt2html plot2/extract
+-      txt2html plot2/levels
+-      txt2html plot2/object
+-      txt2html plot2/output
+-      txt2html plot2/peak
+-      txt2html plot2/peaks
+-      txt2html plot2/phase
+-      txt2html plot2/property
+-      txt2html plot2/region
+-      txt2html plot2/rowcol
+-      txt2html plot2/save
+-      txt2html plot2/tracking
+-      txt2html plot1/button
+-      txt2html plot1/data
+-      txt2html plot1/object
+-      txt2html plot1/output
+-      txt2html plot1/property
+-      txt2html plot1/region
+-      txt2html plot1/slider
+-      txt2html plot1/text
+-      txt2html CHANGES
+-      txt2html INSTALL
+-      txt2html README-2.7
+-      txt2html CHANGES-1.0-1
+-      txt2html CHANGES-1.0-2
+-      txt2html CHANGES-1.0-3
+-      txt2html CHANGES-2.0-0
+-      txt2html CHANGES-2.5-0
+-      txt2html CHANGES-2.6-0
+-      txt2html CHANGES-2.7-0
+-      txt2html LICENSE
++      ./txt2html azara
++      ./txt2html combine
++      ./txt2html components
++      ./txt2html connect
++      ./txt2html contours
++      ./txt2html deflate
++      ./txt2html extract
++      ./txt2html peak_find
++      ./txt2html peak_fit
++      ./txt2html plot1
++      ./txt2html plot2
++      ./txt2html process
++      ./txt2html project
++      ./txt2html slides
++      ./txt2html reflate
++      ./txt2html unblock
++      ./txt2html viewer
++      ./txt2html plot2/baseline
++      ./txt2html plot2/data
++      ./txt2html plot2/extract
++      ./txt2html plot2/levels
++      ./txt2html plot2/object
++      ./txt2html plot2/output
++      ./txt2html plot2/peak
++      ./txt2html plot2/peaks
++      ./txt2html plot2/phase
++      ./txt2html plot2/property
++      ./txt2html plot2/region
++      ./txt2html plot2/rowcol
++      ./txt2html plot2/save
++      ./txt2html plot2/tracking
++      ./txt2html plot1/button
++      ./txt2html plot1/data
++      ./txt2html plot1/object
++      ./txt2html plot1/output
++      ./txt2html plot1/property



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