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[pkgsrc/trunk]: pkgsrc/devel/hdf5 Changes 1.6.5:
details: https://anonhg.NetBSD.org/pkgsrc/rev/19bf9c6c3d21
branches: trunk
changeset: 503771:19bf9c6c3d21
user: adam <adam%pkgsrc.org@localhost>
date: Tue Nov 29 10:03:39 2005 +0000
description:
Changes 1.6.5:
* New features:
* Added yodconfig
* Added HSYS_ERROR, H5F_OBJ_LOCAL flag
* Added mpich2 as a testing "platform"
* Bug fixes
diffstat:
devel/hdf5/Makefile | 7 +-
devel/hdf5/PLIST | 79 ++++++++++++++++++++++--------
devel/hdf5/distinfo | 14 ++--
devel/hdf5/patches/patch-aa | 6 +-
devel/hdf5/patches/patch-ab | 67 +++----------------------
devel/hdf5/patches/patch-ac | 111 +------------------------------------------
6 files changed, 83 insertions(+), 201 deletions(-)
diffs (truncated from 400 to 300 lines):
diff -r 3f2ca48c3328 -r 19bf9c6c3d21 devel/hdf5/Makefile
--- a/devel/hdf5/Makefile Tue Nov 29 09:58:27 2005 +0000
+++ b/devel/hdf5/Makefile Tue Nov 29 10:03:39 2005 +0000
@@ -1,7 +1,6 @@
-# $NetBSD: Makefile,v 1.30 2005/08/16 22:02:10 dmcmahill Exp $
+# $NetBSD: Makefile,v 1.31 2005/11/29 10:03:39 adam Exp $
-DISTNAME= hdf5-1.6.4
-PKGREVISION= 1
+DISTNAME= hdf5-1.6.5
CATEGORIES= devel
MASTER_SITES= ftp://ftp.ncsa.uiuc.edu/HDF/HDF5/hdf5-1.6.4/src/ \
ftp://sunsite.doc.ic.ac.uk/packages/HDF/HDF5/hdf5-1.6.4/src/ \
@@ -11,8 +10,8 @@
HOMEPAGE= http://hdf.ncsa.uiuc.edu/HDF5/
COMMENT= Hierarchical Data Format (new generation)
+USE_LIBTOOL= yes
USE_TOOLS+= tr
-USE_LIBTOOL= yes
GNU_CONFIGURE= yes
TEST_TARGET= check
diff -r 3f2ca48c3328 -r 19bf9c6c3d21 devel/hdf5/PLIST
--- a/devel/hdf5/PLIST Tue Nov 29 09:58:27 2005 +0000
+++ b/devel/hdf5/PLIST Tue Nov 29 10:03:39 2005 +0000
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.11 2005/06/15 01:51:32 dmcmahill Exp $
+@comment $NetBSD: PLIST,v 1.12 2005/11/29 10:03:39 adam Exp $
bin/gif2h5
bin/h52gif
bin/h5cc
@@ -335,6 +335,9 @@
share/doc/html/hdf5/cpplus_RM/H5AbstractDs_8h.html
share/doc/html/hdf5/cpplus_RM/H5Alltypes_8h-source.html
share/doc/html/hdf5/cpplus_RM/H5Alltypes_8h.html
+share/doc/html/hdf5/cpplus_RM/H5ArrayType_8cpp.html
+share/doc/html/hdf5/cpplus_RM/H5ArrayType_8h-source.html
+share/doc/html/hdf5/cpplus_RM/H5ArrayType_8h.html
share/doc/html/hdf5/cpplus_RM/H5AtomType_8cpp.html
share/doc/html/hdf5/cpplus_RM/H5AtomType_8h-source.html
share/doc/html/hdf5/cpplus_RM/H5AtomType_8h.html
@@ -392,8 +395,6 @@
share/doc/html/hdf5/cpplus_RM/H5IdComponent_8cpp.html
share/doc/html/hdf5/cpplus_RM/H5IdComponent_8h-source.html
share/doc/html/hdf5/cpplus_RM/H5IdComponent_8h.html
-share/doc/html/hdf5/cpplus_RM/H5Idtemplates_8h-source.html
-share/doc/html/hdf5/cpplus_RM/H5Idtemplates_8h.html
share/doc/html/hdf5/cpplus_RM/H5Include_8h-source.html
share/doc/html/hdf5/cpplus_RM/H5Include_8h.html
share/doc/html/hdf5/cpplus_RM/H5IntType_8cpp.html
@@ -411,17 +412,22 @@
share/doc/html/hdf5/cpplus_RM/H5PropList_8cpp.html
share/doc/html/hdf5/cpplus_RM/H5PropList_8h-source.html
share/doc/html/hdf5/cpplus_RM/H5PropList_8h.html
-share/doc/html/hdf5/cpplus_RM/H5RefCounter_8cpp.html
-share/doc/html/hdf5/cpplus_RM/H5RefCounter_8h-source.html
-share/doc/html/hdf5/cpplus_RM/H5RefCounter_8h.html
share/doc/html/hdf5/cpplus_RM/H5StrType_8cpp.html
share/doc/html/hdf5/cpplus_RM/H5StrType_8h-source.html
share/doc/html/hdf5/cpplus_RM/H5StrType_8h.html
+share/doc/html/hdf5/cpplus_RM/H5VarLenType_8cpp.html
+share/doc/html/hdf5/cpplus_RM/H5VarLenType_8h-source.html
+share/doc/html/hdf5/cpplus_RM/H5VarLenType_8h.html
share/doc/html/hdf5/cpplus_RM/NCSAlogo.jpg
+share/doc/html/hdf5/cpplus_RM/RM_stylesheet.css
share/doc/html/hdf5/cpplus_RM/annotated.html
+share/doc/html/hdf5/cpplus_RM/chunks_8cpp-example.html
share/doc/html/hdf5/cpplus_RM/classH5_1_1AbstractDs-members.html
share/doc/html/hdf5/cpplus_RM/classH5_1_1AbstractDs.html
share/doc/html/hdf5/cpplus_RM/classH5_1_1AbstractDs.png
+share/doc/html/hdf5/cpplus_RM/classH5_1_1ArrayType-members.html
+share/doc/html/hdf5/cpplus_RM/classH5_1_1ArrayType.html
+share/doc/html/hdf5/cpplus_RM/classH5_1_1ArrayType.png
share/doc/html/hdf5/cpplus_RM/classH5_1_1AtomType-members.html
share/doc/html/hdf5/cpplus_RM/classH5_1_1AtomType.html
share/doc/html/hdf5/cpplus_RM/classH5_1_1AtomType.png
@@ -514,32 +520,64 @@
share/doc/html/hdf5/cpplus_RM/classH5_1_1PropListIException-members.html
share/doc/html/hdf5/cpplus_RM/classH5_1_1PropListIException.html
share/doc/html/hdf5/cpplus_RM/classH5_1_1PropListIException.png
-share/doc/html/hdf5/cpplus_RM/classH5_1_1RefCounter-members.html
-share/doc/html/hdf5/cpplus_RM/classH5_1_1RefCounter.html
-share/doc/html/hdf5/cpplus_RM/classH5_1_1RefCounter_1_1RefCounter.html
-share/doc/html/hdf5/cpplus_RM/classH5_1_1RefCounter_1_1abc.html
share/doc/html/hdf5/cpplus_RM/classH5_1_1ReferenceException-members.html
share/doc/html/hdf5/cpplus_RM/classH5_1_1ReferenceException.html
share/doc/html/hdf5/cpplus_RM/classH5_1_1ReferenceException.png
share/doc/html/hdf5/cpplus_RM/classH5_1_1StrType-members.html
share/doc/html/hdf5/cpplus_RM/classH5_1_1StrType.html
share/doc/html/hdf5/cpplus_RM/classH5_1_1StrType.png
-share/doc/html/hdf5/cpplus_RM/classH5_1_1UserData4Aiterate-members.html
-share/doc/html/hdf5/cpplus_RM/classH5_1_1UserData4Aiterate.html
+share/doc/html/hdf5/cpplus_RM/classH5_1_1VarLenType-members.html
+share/doc/html/hdf5/cpplus_RM/classH5_1_1VarLenType.html
+share/doc/html/hdf5/cpplus_RM/classH5_1_1VarLenType.png
+share/doc/html/hdf5/cpplus_RM/compound_8cpp-example.html
share/doc/html/hdf5/cpplus_RM/create_8cpp-example.html
share/doc/html/hdf5/cpplus_RM/doxygen.css
share/doc/html/hdf5/cpplus_RM/doxygen.png
-share/doc/html/hdf5/cpplus_RM/dsets_8cpp-example.html
share/doc/html/hdf5/cpplus_RM/examples.html
+share/doc/html/hdf5/cpplus_RM/extend__ds_8cpp-example.html
share/doc/html/hdf5/cpplus_RM/files.html
share/doc/html/hdf5/cpplus_RM/functions.html
+share/doc/html/hdf5/cpplus_RM/functions_0x63.html
+share/doc/html/hdf5/cpplus_RM/functions_0x64.html
+share/doc/html/hdf5/cpplus_RM/functions_0x65.html
+share/doc/html/hdf5/cpplus_RM/functions_0x66.html
+share/doc/html/hdf5/cpplus_RM/functions_0x67.html
+share/doc/html/hdf5/cpplus_RM/functions_0x68.html
+share/doc/html/hdf5/cpplus_RM/functions_0x69.html
+share/doc/html/hdf5/cpplus_RM/functions_0x6c.html
+share/doc/html/hdf5/cpplus_RM/functions_0x6d.html
+share/doc/html/hdf5/cpplus_RM/functions_0x6e.html
+share/doc/html/hdf5/cpplus_RM/functions_0x6f.html
+share/doc/html/hdf5/cpplus_RM/functions_0x70.html
+share/doc/html/hdf5/cpplus_RM/functions_0x72.html
+share/doc/html/hdf5/cpplus_RM/functions_0x73.html
+share/doc/html/hdf5/cpplus_RM/functions_0x74.html
+share/doc/html/hdf5/cpplus_RM/functions_0x75.html
+share/doc/html/hdf5/cpplus_RM/functions_0x76.html
+share/doc/html/hdf5/cpplus_RM/functions_0x77.html
+share/doc/html/hdf5/cpplus_RM/functions_0x7e.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x63.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x64.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x65.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x66.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x67.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x68.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x69.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x6c.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x6d.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x6e.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x6f.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x70.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x72.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x73.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x74.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x75.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x76.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x77.html
+share/doc/html/hdf5/cpplus_RM/functions_func_0x7e.html
share/doc/html/hdf5/cpplus_RM/functions_func.html
share/doc/html/hdf5/cpplus_RM/functions_vars.html
-share/doc/html/hdf5/cpplus_RM/globals.html
-share/doc/html/hdf5/cpplus_RM/globals_defs.html
-share/doc/html/hdf5/cpplus_RM/globals_func.html
-share/doc/html/hdf5/cpplus_RM/globals_type.html
-share/doc/html/hdf5/cpplus_RM/globals_vars.html
+share/doc/html/hdf5/cpplus_RM/h5group_8cpp-example.html
share/doc/html/hdf5/cpplus_RM/header.html
share/doc/html/hdf5/cpplus_RM/header_files/Dependencies
share/doc/html/hdf5/cpplus_RM/header_files/filelist.xml
@@ -548,12 +586,9 @@
share/doc/html/hdf5/cpplus_RM/hierarchy.html
share/doc/html/hdf5/cpplus_RM/index.html
share/doc/html/hdf5/cpplus_RM/namespaceH5.html
-share/doc/html/hdf5/cpplus_RM/namespacemembers.html
-share/doc/html/hdf5/cpplus_RM/namespacemembers_func.html
-share/doc/html/hdf5/cpplus_RM/namespacemembers_type.html
-share/doc/html/hdf5/cpplus_RM/namespacemembers_vars.html
share/doc/html/hdf5/cpplus_RM/namespaces.html
share/doc/html/hdf5/cpplus_RM/namespacestd.html
+share/doc/html/hdf5/cpplus_RM/readdata_8cpp-example.html
share/doc/html/hdf5/cpplus_RM/writedata_8cpp-example.html
share/doc/html/hdf5/dataset_p1.gif
share/doc/html/hdf5/ddl.html
diff -r 3f2ca48c3328 -r 19bf9c6c3d21 devel/hdf5/distinfo
--- a/devel/hdf5/distinfo Tue Nov 29 09:58:27 2005 +0000
+++ b/devel/hdf5/distinfo Tue Nov 29 10:03:39 2005 +0000
@@ -1,8 +1,8 @@
-$NetBSD: distinfo,v 1.15 2005/08/30 01:31:21 dmcmahill Exp $
+$NetBSD: distinfo,v 1.16 2005/11/29 10:03:39 adam Exp $
-SHA1 (hdf5-1.6.4.tar.gz) = e419e81097b8093d16d96708b764bd85db053e86
-RMD160 (hdf5-1.6.4.tar.gz) = 8175af3153bb0a5a1278c01af2d3940f4fd5084f
-Size (hdf5-1.6.4.tar.gz) = 4862437 bytes
-SHA1 (patch-aa) = 187f8f866e0ba43cc704995f782828b35eebbbe5
-SHA1 (patch-ab) = 9e4316f83e2103ffc4ce24ebbb4519307d3c30a3
-SHA1 (patch-ac) = 64ef0b2c6785d8cf2f52ec946090a8c69b3e35e8
+SHA1 (hdf5-1.6.5.tar.gz) = ce27eb324b1acbf0da3d2b24b3c38f1fc03c2442
+RMD160 (hdf5-1.6.5.tar.gz) = 544c668d9349e9943767e776f5ece9c1aab75fcf
+Size (hdf5-1.6.5.tar.gz) = 4930666 bytes
+SHA1 (patch-aa) = 794ab1e1fbb41281c4b28a333f4bd91d37513084
+SHA1 (patch-ab) = 91829e06db57da7b96c513bd176ef33c134a1de3
+SHA1 (patch-ac) = 05c5215674ad32fe2d8f0fef06c26bdd20299536
diff -r 3f2ca48c3328 -r 19bf9c6c3d21 devel/hdf5/patches/patch-aa
--- a/devel/hdf5/patches/patch-aa Tue Nov 29 09:58:27 2005 +0000
+++ b/devel/hdf5/patches/patch-aa Tue Nov 29 10:03:39 2005 +0000
@@ -1,8 +1,8 @@
-$NetBSD: patch-aa,v 1.7 2005/02/25 09:10:18 adam Exp $
+$NetBSD: patch-aa,v 1.8 2005/11/29 10:03:39 adam Exp $
---- config/commence.in.orig 2004-01-07 18:45:06.000000000 +0000
+--- config/commence.in.orig 2005-10-28 22:15:26.000000000 +0200
+++ config/commence.in
-@@ -60,7 +60,7 @@ LT_UNINSTALL=$(LT) --mode=uninstall $(RM
+@@ -78,7 +78,7 @@ LT_UNINSTALL=$(LT) --mode=uninstall $(RM
## defined. The main makefile is free to redefine these to something else.
DOCDIR=$(docdir)
SUBDOCDIR=
diff -r 3f2ca48c3328 -r 19bf9c6c3d21 devel/hdf5/patches/patch-ab
--- a/devel/hdf5/patches/patch-ab Tue Nov 29 09:58:27 2005 +0000
+++ b/devel/hdf5/patches/patch-ab Tue Nov 29 10:03:39 2005 +0000
@@ -1,60 +1,13 @@
-$NetBSD: patch-ab,v 1.5 2005/08/30 01:31:21 dmcmahill Exp $
+$NetBSD: patch-ab,v 1.6 2005/11/29 10:03:39 adam Exp $
---- configure.in.orig 2005-03-15 21:36:03.000000000 -0500
-+++ configure.in
-@@ -71,8 +71,9 @@ dnl that it actually does what it's supp
- dnl since configure relies upon tr heavily and there's no use continuing
- dnl if it's broken.
- dnl
--AC_MSG_CHECKING([if tr works])
--TR_TEST="`echo Test | tr 'a-z,' 'A-Z '`"
-+AC_PATH_PROG(TR, tr)
-+AC_MSG_CHECKING([if ${TR} works])
-+TR_TEST="`echo Test | ${TR} [a-z], [A-Z]\ `"
- if test $TR_TEST != "TEST"; then
- AC_MSG_ERROR([tr program doesn't work])
- else
-@@ -528,6 +529,7 @@ AC_CHECK_LIB([m], [ceil])
-
- if test "`uname`" = "SunOS" -o "`uname -sr`" = "HP-UX B.11.00"; then
- dnl ...for Solaris
-+ AC_CHECK_LIB([socket], [socket])
- AC_CHECK_LIB([nsl], [xdr_int])
- fi
-
-@@ -1652,7 +1654,7 @@ case "X-$DEBUG_PKG" in
- esac
+--- perform/Makefile.in.orig 2005-11-29 11:46:55.000000000 +0100
++++ perform/Makefile.in
+@@ -31,7 +31,7 @@ LIBTOOLS=../tools/lib/libh5tools.la
+ TEST_PROGS_PARA=h5perf
+ TEST_PROGS=iopipe chunk overhead zip_perf perf_meta
- if test -n "$DEBUG_PKG"; then
-- for pkg in `echo $DEBUG_PKG | tr 'a-z,' 'A-Z '`; do
-+ for pkg in `echo $DEBUG_PKG | ${TR} "[a-z]," "[A-Z] "`; do
- CPPFLAGS="$CPPFLAGS -DH5${pkg}_DEBUG"
- done
- fi
-@@ -1819,7 +1821,7 @@ case "$CC_BASENAME" in
- if (echo $cmd | grep / >/dev/null); then
- path="`echo $cmd | sed 's/\(.*\)\/.*$/\1/'`"
- else
-- for path in `echo $PATH | tr : ' '`; do
-+ for path in `echo $PATH | ${TR} ":" " "`; do
- if test -x $path/$cmd; then
- break
- fi
-@@ -1850,7 +1852,7 @@ case "$CC_BASENAME" in
- if (echo $cmd | grep / >/dev/null); then
- path="`echo $cmd | sed 's/\(.*\)\/.*$/\1/'`"
- else
-- for path in `echo $PATH | tr : ' '`; do
-+ for path in `echo $PATH | ${TR} ":" " "`; do
- if test -x $path/$cmd; then
- break
- fi
-@@ -2100,7 +2102,7 @@ case "X-$FILTERS" in
- esac
+-PUB_PROGS=h5perf
++PUB_PROGS=
- if test -n "$FILTERS"; then
-- for filter in `echo $FILTERS | tr 'a-z,' 'A-Z '`; do
-+ for filter in `echo $FILTERS | ${TR} "[a-z]," "[A-Z] "`; do
- dnl ------------------------------------------------------------------
- dnl Have to use separate 'if' construct for each filter, so that
- dnl autoheader can detect the AC_DEFINE for each one...
+ ## These are the files that `make clean' (and derivatives) will remove from
+ ## this directory.
diff -r 3f2ca48c3328 -r 19bf9c6c3d21 devel/hdf5/patches/patch-ac
--- a/devel/hdf5/patches/patch-ac Tue Nov 29 09:58:27 2005 +0000
+++ b/devel/hdf5/patches/patch-ac Tue Nov 29 10:03:39 2005 +0000
@@ -1,69 +1,8 @@
-$NetBSD: patch-ac,v 1.5 2005/08/30 01:31:21 dmcmahill Exp $
+$NetBSD: patch-ac,v 1.6 2005/11/29 10:03:39 adam Exp $
---- configure.orig 2005-03-15 21:38:09.000000000 -0500
+--- configure.orig 2005-11-11 01:17:39.000000000 +0100
+++ configure
-@@ -473,7 +473,7 @@ ac_includes_default="\
- # include <unistd.h>
- #endif"
-
--ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir
sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS build build_cpu build_vendor build_os host
host_cpu host_vendor host_os CPPFLAGS DEFAULT_LIBS HSIZET CC CFLAGS LDFLAGS ac_ct_CC EXEEXT OBJEXT config_dirs subdirs LT_STATIC_EXEC PERL AR SET_MAKE INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA LN_S
ECHO RANLIB ac_ct_RANLIB STRIP ac_ct_STRIP CPP EGREP LIBTOOL USE_FILTER_DEFLATE USE_FILTER_SZIP SSL GASS TESTGASS SRB TESTSRB PDB2HDF PTHREAD DEBUG_PKG TRACE_API INSTRUMENT_LIBRARY PARALLEL RUNSERIAL
RUNPARALLEL TESTPARALLEL MPE FILTERS USE_FILTER_SHUFFLE USE_FILTER_FLETCHER32 H5_VERSION CONFIG_DATE CONFIG_USER CONFIG_MODE BYTESEX STATIC_SHARED CC_VERSION ROOT DYNAMIC_DIRS HL SEARCH SETX LIBOBJS
LTLIBOBJS'
-+ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir
sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS build build_cpu build_vendor build_os host
host_cpu host_vendor host_os CPPFLAGS DEFAULT_LIBS TR HSIZET CC CFLAGS LDFLAGS ac_ct_CC EXEEXT OBJEXT config_dirs subdirs LT_STATIC_EXEC PERL AR SET_MAKE INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA
LN_S ECHO RANLIB ac_ct_RANLIB STRIP ac_ct_STRIP CPP EGREP LIBTOOL USE_FILTER_DEFLATE USE_FILTER_SZIP SSL GASS TESTGASS SRB TESTSRB PDB2HDF PTHREAD DEBUG_PKG TRACE_API INSTRUMENT_LIBRARY PARALLEL
RUNSERIAL RUNPARALLEL TESTPARALLEL MPE FILTERS USE_FILTER_SHUFFLE USE_FILTER_FLETCHER32 H5_VERSION CONFIG_DATE CONFIG_USER CONFIG_MODE BYTESEX STATIC_SHARED CC_VERSION ROOT DYNAMIC_DIRS HL SEARCH
SETX LIBOBJS LTLIBOBJS'
- ac_subst_files='DEPEND COMMENCE CONCLUDE'
-
- # Initialize some variables set by options.
-@@ -1630,9 +1630,48 @@ set >&5
- echo "$as_me:$LINENO: result: done" >&5
- echo "${ECHO_T}done" >&6
-
--echo "$as_me:$LINENO: checking if tr works" >&5
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