[pkgsrc/trunk]: pkgsrc/math/R-genetics Imported R-genetics from pkgsrc-wip.

[rillig <rillig%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/cf9a05f29ba9
branches:  trunk
changeset: 502356:cf9a05f29ba9
user:      rillig <rillig%pkgsrc.org@localhost>
date:      Fri Nov 04 08:13:15 2005 +0000

description:
Imported R-genetics from pkgsrc-wip.

Classes and methods for handling genetic data. Includes classes to
represent genotypes and haplotypes at single markers up to multiple
markers on multiple chromosomes. Function include allele frequencies,
flagging homo/heterozygotes, flagging carriers of certain alleles,
estimating and testing for Hardy-Weinberg disequilibrium, estimating
and testing for linkage disequilibrium, ...

diffstat:

 math/R-genetics/DESCR    |   6 ++++++
 math/R-genetics/Makefile |  15 +++++++++++++++
 math/R-genetics/PLIST    |   1 +
 math/R-genetics/distinfo |   5 +++++
 4 files changed, 27 insertions(+), 0 deletions(-)

diffs (43 lines):

diff -r 0c4eaeb4ffb5 -r cf9a05f29ba9 math/R-genetics/DESCR
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/math/R-genetics/DESCR     Fri Nov 04 08:13:15 2005 +0000
@@ -0,0 +1,6 @@
+Classes and methods for handling genetic data. Includes classes to
+represent genotypes and haplotypes at single markers up to multiple
+markers on multiple chromosomes. Function include allele frequencies,
+flagging homo/heterozygotes, flagging carriers of certain alleles,
+estimating and testing for Hardy-Weinberg disequilibrium, estimating
+and testing for linkage disequilibrium, ...
diff -r 0c4eaeb4ffb5 -r cf9a05f29ba9 math/R-genetics/Makefile
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/math/R-genetics/Makefile  Fri Nov 04 08:13:15 2005 +0000
@@ -0,0 +1,15 @@
+# $NetBSD: Makefile,v 1.1.1.1 2005/11/04 08:13:15 rillig Exp $
+#
+
+CATEGORIES=             math
+MASTER_SITES=           ${MASTER_SITE_R_CRAN:=contrib/}
+
+MAINTAINER=             mchittur%cs.nmsu.edu@localhost
+HOMEPAGE=               ${R_HOMEPAGE_BASE}/genetics.html
+COMMENT=               Classes and methods for handling genetic data
+
+R_PKGNAME=             genetics
+R_PKGVER=               1.0.4
+
+.include "../../math/R/Makefile.extension"
+.include "../../mk/bsd.pkg.mk"
diff -r 0c4eaeb4ffb5 -r cf9a05f29ba9 math/R-genetics/PLIST
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/math/R-genetics/PLIST     Fri Nov 04 08:13:15 2005 +0000
@@ -0,0 +1,1 @@
+@comment $NetBSD: PLIST,v 1.1.1.1 2005/11/04 08:13:15 rillig Exp $
diff -r 0c4eaeb4ffb5 -r cf9a05f29ba9 math/R-genetics/distinfo
--- /dev/null   Thu Jan 01 00:00:00 1970 +0000
+++ b/math/R-genetics/distinfo  Fri Nov 04 08:13:15 2005 +0000
@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.1.1.1 2005/11/04 08:13:15 rillig Exp $
+
+SHA1 (R/genetics_1.0.4.tar.gz) = 594481ac598c18b2fa5277a025beb7573dd5191d
+RMD160 (R/genetics_1.0.4.tar.gz) = 083c724a5b720d67008f1938a578cdc86f347049
+Size (R/genetics_1.0.4.tar.gz) = 212717 bytes