[pkgsrc/trunk]: pkgsrc/math/R-randomForest Update to 4.6.10

[wen <wen%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/2537d8ff02f6
branches:  trunk
changeset: 652344:2537d8ff02f6
user:      wen <wen%pkgsrc.org@localhost>
date:      Sun May 31 02:38:49 2015 +0000

description:
Update to 4.6.10

Upstream changes:
Changes in 4.6-10:

* Fixed bugs introduced in 4.6-8 and 4.6-9. Levels for ordered factors
  in predictors are no longer checked for consistency between training
  and test data in predict.randomForest().  In 4.6-9 the response is mean
  centered before running the algorithm (for regression), but the mean was
  not added back in the $y component of the return object from
  randomForest().

Changes in 4.6-9:

* Categorical predictors are allowed to have up to 53 categories now.

Changes in 4.6-8:

* There was a bug in the handling of ordered factors in randomForest.formula().
  (Reported by Barry Rawlingson.)

* Changed randomForest.formula() and predict.randomForest() so that
  predict() without newdata when na.action=na.exclude pads the output
  with NAs to match the rows in the original data (suggested by Barry
  Rawlingson.).

* There was a long standing bug in randomForest(..., proximity=TRUE, oob.prox=FALSE)
  in regression mode. (Thanks to Stefano Romano for the report.)

diffstat:

 math/R-randomForest/Makefile |  4 ++--
 math/R-randomForest/distinfo |  8 ++++----
 2 files changed, 6 insertions(+), 6 deletions(-)

diffs (31 lines):

diff -r 3477840c0a92 -r 2537d8ff02f6 math/R-randomForest/Makefile
--- a/math/R-randomForest/Makefile      Sun May 31 02:33:44 2015 +0000
+++ b/math/R-randomForest/Makefile      Sun May 31 02:38:49 2015 +0000
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.7 2012/12/17 15:04:19 wen Exp $
+# $NetBSD: Makefile,v 1.8 2015/05/31 02:38:49 wen Exp $
 
 CATEGORIES=    math
 MASTER_SITES=  ${MASTER_SITE_R_CRAN:=contrib/}
@@ -9,7 +9,7 @@
 LICENSE=       gnu-gpl-v2
 
 R_PKGNAME=     randomForest
-R_PKGVER=      4.6-7
+R_PKGVER=      4.6-10
 
 USE_LANGUAGES= c fortran
 
diff -r 3477840c0a92 -r 2537d8ff02f6 math/R-randomForest/distinfo
--- a/math/R-randomForest/distinfo      Sun May 31 02:33:44 2015 +0000
+++ b/math/R-randomForest/distinfo      Sun May 31 02:38:49 2015 +0000
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.3 2012/12/17 15:04:19 wen Exp $
+$NetBSD: distinfo,v 1.4 2015/05/31 02:38:49 wen Exp $
 
-SHA1 (R/randomForest_4.6-7.tar.gz) = 01f5455d952627cd7a2a1a3977ccfa4005121e9f
-RMD160 (R/randomForest_4.6-7.tar.gz) = 951808aeb479134080324792c6450fbb4196cf13
-Size (R/randomForest_4.6-7.tar.gz) = 77163 bytes
+SHA1 (R/randomForest_4.6-10.tar.gz) = 783a11470ec41e3a517e349288edef4825c56ec9
+RMD160 (R/randomForest_4.6-10.tar.gz) = bae834a90ae9d42f9a0e473c4a573413b4b06cd7
+Size (R/randomForest_4.6-10.tar.gz) = 79096 bytes