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[pkgsrc/trunk]: pkgsrc/math/R Update R to version 2.6.0
details: https://anonhg.NetBSD.org/pkgsrc/rev/c352f8ef21f3
branches: trunk
changeset: 534936:c352f8ef21f3
user: markd <markd%pkgsrc.org@localhost>
date: Sat Nov 03 20:14:39 2007 +0000
description:
Update R to version 2.6.0
Many new features, changes and bug fixes. See lib/R/doc/NEWS for details.
diffstat:
math/R/Makefile | 6 +-
math/R/PLIST | 343 ++++++++++++++++++++++++++++++++++++++++-------
math/R/distinfo | 12 +-
math/R/patches/patch-aa | 14 +-
math/R/patches/patch-ac | 238 ++++++++++++++++++---------------
5 files changed, 431 insertions(+), 182 deletions(-)
diffs (truncated from 2260 to 300 lines):
diff -r b502597caabb -r c352f8ef21f3 math/R/Makefile
--- a/math/R/Makefile Sat Nov 03 18:53:11 2007 +0000
+++ b/math/R/Makefile Sat Nov 03 20:14:39 2007 +0000
@@ -1,7 +1,6 @@
-# $NetBSD: Makefile,v 1.92 2007/09/08 13:44:48 rillig Exp $
+# $NetBSD: Makefile,v 1.93 2007/11/03 20:14:39 markd Exp $
-DISTNAME= R-2.4.1
-PKGREVISION= 3
+DISTNAME= R-2.6.0
CATEGORIES= math
MASTER_SITES= ${MASTER_SITE_R_CRAN:=base/R-2/}
@@ -18,6 +17,7 @@
TEST_TARGET= check
USE_TOOLS+= gmake gzip:run makeinfo perl:run sed unzip:run xmkmf
USE_GNU_READLINE= yes # uses callback interface
+USE_GNU_ICONV= yes # latin1 support, iconvlist
USE_LANGUAGES= c fortran
USE_LIBTOOL= yes
TEXINFO_REQD= 4.7
diff -r b502597caabb -r c352f8ef21f3 math/R/PLIST
--- a/math/R/PLIST Sat Nov 03 18:53:11 2007 +0000
+++ b/math/R/PLIST Sat Nov 03 20:14:39 2007 +0000
@@ -1,5 +1,6 @@
-@comment $NetBSD: PLIST,v 1.4 2007/03/20 11:00:58 markd Exp $
+@comment $NetBSD: PLIST,v 1.5 2007/11/03 20:14:39 markd Exp $
bin/R
+bin/Rscript
lib/R/COPYING
lib/R/NEWS
lib/R/SVN-REVISION
@@ -15,6 +16,7 @@
lib/R/bin/Rdconv
lib/R/bin/Rdiff
lib/R/bin/Rprof
+lib/R/bin/Rscript
lib/R/bin/SHLIB
lib/R/bin/Sd2Rd
lib/R/bin/Stangle
@@ -28,7 +30,6 @@
lib/R/bin/libtool
lib/R/bin/mkinstalldirs
lib/R/bin/pager
-lib/R/bin/texi2dvi
lib/R/doc/AUTHORS
lib/R/doc/COPYING
lib/R/doc/COPYING.LIB
@@ -103,6 +104,8 @@
lib/R/include/R_ext/eventloop.h
lib/R/include/R_ext/libextern.h
lib/R/include/R_ext/rlocale.h
+lib/R/include/R_ext/stats_package.h
+lib/R/include/R_ext/stats_stubs.h
lib/R/include/Rconfig.h
lib/R/include/Rdefines.h
lib/R/include/Rdevices.h
@@ -118,6 +121,7 @@
lib/R/library/KernSmooth/CONTENTS
lib/R/library/KernSmooth/DESCRIPTION
lib/R/library/KernSmooth/INDEX
+lib/R/library/KernSmooth/LICENCE
lib/R/library/KernSmooth/Meta/Rd.rds
lib/R/library/KernSmooth/Meta/hsearch.rds
lib/R/library/KernSmooth/Meta/nsInfo.rds
@@ -759,6 +763,7 @@
lib/R/library/base/R-ex/Cstack_info.R
lib/R/library/base/R-ex/DateTimeClasses.R
lib/R/library/base/R-ex/Dates.R
+lib/R/library/base/R-ex/Encoding.R
lib/R/library/base/R-ex/Extract.R
lib/R/library/base/R-ex/Extract.data.frame.R
lib/R/library/base/R-ex/Extract.factor.R
@@ -770,6 +775,7 @@
lib/R/library/base/R-ex/Memory.R
lib/R/library/base/R-ex/NA.R
lib/R/library/base/R-ex/NULL.R
+lib/R/library/base/R-ex/NumericConstants.R
lib/R/library/base/R-ex/Ops.Date.R
lib/R/library/base/R-ex/Paren.R
lib/R/library/base/R-ex/Platform.R
@@ -780,9 +786,15 @@
lib/R/library/base/R-ex/Round.R
lib/R/library/base/R-ex/Special.R
lib/R/library/base/R-ex/Startup.R
+lib/R/library/base/R-ex/Sys.getenv.R
+lib/R/library/base/R-ex/Sys.getpid.R
+lib/R/library/base/R-ex/Sys.glob.R
lib/R/library/base/R-ex/Sys.info.R
+lib/R/library/base/R-ex/Sys.localeconv.R
+lib/R/library/base/R-ex/Sys.setenv.R
lib/R/library/base/R-ex/Sys.sleep.R
lib/R/library/base/R-ex/Sys.time.R
+lib/R/library/base/R-ex/Sys.which.R
lib/R/library/base/R-ex/Version.R
lib/R/library/base/R-ex/abbreviate.R
lib/R/library/base/R-ex/agrep.R
@@ -811,6 +823,7 @@
lib/R/library/base/R-ex/by.R
lib/R/library/base/R-ex/c.R
lib/R/library/base/R-ex/call.R
+lib/R/library/base/R-ex/callCC.R
lib/R/library/base/R-ex/capabilities.R
lib/R/library/base/R-ex/cat.R
lib/R/library/base/R-ex/cbind.R
@@ -831,7 +844,6 @@
lib/R/library/base/R-ex/conflicts.R
lib/R/library/base/R-ex/connections.R
lib/R/library/base/R-ex/converters.R
-lib/R/library/base/R-ex/count.fields.R
lib/R/library/base/R-ex/crossprod.R
lib/R/library/base/R-ex/cumsum.R
lib/R/library/base/R-ex/cut.POSIXt.R
@@ -880,6 +892,7 @@
lib/R/library/base/R-ex/formatDL.R
lib/R/library/base/R-ex/formatc.R
lib/R/library/base/R-ex/function.R
+lib/R/library/base/R-ex/funprog.R
lib/R/library/base/R-ex/gc.R
lib/R/library/base/R-ex/gc.time.R
lib/R/library/base/R-ex/get.R
@@ -887,8 +900,6 @@
lib/R/library/base/R-ex/getDLLRegisteredRoutines.R
lib/R/library/base/R-ex/getLoadedDLLs.R
lib/R/library/base/R-ex/getNativeSymbolInfo.R
-lib/R/library/base/R-ex/getenv.R
-lib/R/library/base/R-ex/getpid.R
lib/R/library/base/R-ex/gettext.R
lib/R/library/base/R-ex/getwd.R
lib/R/library/base/R-ex/gl.R
@@ -923,7 +934,6 @@
lib/R/library/base/R-ex/list.R
lib/R/library/base/R-ex/list.files.R
lib/R/library/base/R-ex/load.R
-lib/R/library/base/R-ex/localeconv.R
lib/R/library/base/R-ex/locales.R
lib/R/library/base/R-ex/lower.tri.R
lib/R/library/base/R-ex/ls.R
@@ -958,12 +968,12 @@
lib/R/library/base/R-ex/ns-dblcolon.R
lib/R/library/base/R-ex/ns-topenv.R
lib/R/library/base/R-ex/numeric.R
+lib/R/library/base/R-ex/numeric_version.R
lib/R/library/base/R-ex/octmode.R
lib/R/library/base/R-ex/on.exit.R
lib/R/library/base/R-ex/options.R
lib/R/library/base/R-ex/order.R
lib/R/library/base/R-ex/outer.R
-lib/R/library/base/R-ex/package_version.R
lib/R/library/base/R-ex/parse.R
lib/R/library/base/R-ex/paste.R
lib/R/library/base/R-ex/path.expand.R
@@ -978,7 +988,6 @@
lib/R/library/base/R-ex/prod.R
lib/R/library/base/R-ex/prop.table.R
lib/R/library/base/R-ex/pushBack.R
-lib/R/library/base/R-ex/putenv.R
lib/R/library/base/R-ex/qr.R
lib/R/library/base/R-ex/qraux.R
lib/R/library/base/R-ex/quit.R
@@ -1022,7 +1031,7 @@
lib/R/library/base/R-ex/source.R
lib/R/library/base/R-ex/split.R
lib/R/library/base/R-ex/sprintf.R
-lib/R/library/base/R-ex/stack.R
+lib/R/library/base/R-ex/srcfile.R
lib/R/library/base/R-ex/stop.R
lib/R/library/base/R-ex/stopifnot.R
lib/R/library/base/R-ex/strptime.R
@@ -1038,6 +1047,7 @@
lib/R/library/base/R-ex/sweep.R
lib/R/library/base/R-ex/switch.R
lib/R/library/base/R-ex/sys.parent.R
+lib/R/library/base/R-ex/sys.source.R
lib/R/library/base/R-ex/system.R
lib/R/library/base/R-ex/system.file.R
lib/R/library/base/R-ex/system.time.R
@@ -1053,6 +1063,7 @@
lib/R/library/base/R-ex/toString.R
lib/R/library/base/R-ex/trace.R
lib/R/library/base/R-ex/traceback.R
+lib/R/library/base/R-ex/tracemem.R
lib/R/library/base/R-ex/transform.R
lib/R/library/base/R-ex/try.R
lib/R/library/base/R-ex/typeof.R
@@ -1068,7 +1079,6 @@
lib/R/library/base/R-ex/which.min.R
lib/R/library/base/R-ex/with.R
lib/R/library/base/R-ex/write.R
-lib/R/library/base/R-ex/write.table.R
lib/R/library/base/R-ex/zMachine.R
lib/R/library/base/R-ex/zScript.R
lib/R/library/base/R-ex/zpackages.R
@@ -1092,6 +1102,7 @@
lib/R/library/base/help/Dates
lib/R/library/base/help/Defunct
lib/R/library/base/help/Deprecated
+lib/R/library/base/help/Encoding
lib/R/library/base/help/Extract
lib/R/library/base/help/Extract.data.frame
lib/R/library/base/help/Extract.factor
@@ -1117,15 +1128,22 @@
lib/R/library/base/help/Random-user
lib/R/library/base/help/RdUtils
lib/R/library/base/help/Recall
+lib/R/library/base/help/Reserved
lib/R/library/base/help/Rhome
lib/R/library/base/help/Round
lib/R/library/base/help/Signals
lib/R/library/base/help/Special
lib/R/library/base/help/Startup
lib/R/library/base/help/Syntax
+lib/R/library/base/help/Sys.getenv
+lib/R/library/base/help/Sys.getpid
+lib/R/library/base/help/Sys.glob
lib/R/library/base/help/Sys.info
+lib/R/library/base/help/Sys.localeconv
+lib/R/library/base/help/Sys.setenv
lib/R/library/base/help/Sys.sleep
lib/R/library/base/help/Sys.time
+lib/R/library/base/help/Sys.which
lib/R/library/base/help/Trig
lib/R/library/base/help/UseMethod
lib/R/library/base/help/Version
@@ -1164,6 +1182,7 @@
lib/R/library/base/help/by
lib/R/library/base/help/c
lib/R/library/base/help/call
+lib/R/library/base/help/callCC
lib/R/library/base/help/capabilities
lib/R/library/base/help/cat
lib/R/library/base/help/cbind
@@ -1186,7 +1205,6 @@
lib/R/library/base/help/contributors
lib/R/library/base/help/converters
lib/R/library/base/help/copyright
-lib/R/library/base/help/count.fields
lib/R/library/base/help/crossprod
lib/R/library/base/help/cumsum
lib/R/library/base/help/cut
@@ -1241,6 +1259,7 @@
lib/R/library/base/help/formatDL
lib/R/library/base/help/formatc
lib/R/library/base/help/function
+lib/R/library/base/help/funprog
lib/R/library/base/help/gc
lib/R/library/base/help/gc.time
lib/R/library/base/help/gctorture
@@ -1249,8 +1268,6 @@
lib/R/library/base/help/getDLLRegisteredRoutines
lib/R/library/base/help/getLoadedDLLs
lib/R/library/base/help/getNativeSymbolInfo
-lib/R/library/base/help/getenv
-lib/R/library/base/help/getpid
lib/R/library/base/help/gettext
lib/R/library/base/help/getwd
lib/R/library/base/help/gl
@@ -1290,7 +1307,6 @@
lib/R/library/base/help/list
lib/R/library/base/help/list.files
lib/R/library/base/help/load
-lib/R/library/base/help/localeconv
lib/R/library/base/help/locales
lib/R/library/base/help/logical
lib/R/library/base/help/lower.tri
@@ -1331,12 +1347,12 @@
lib/R/library/base/help/ns-reflect
lib/R/library/base/help/ns-topenv
lib/R/library/base/help/numeric
+lib/R/library/base/help/numeric_version
lib/R/library/base/help/octmode
lib/R/library/base/help/on.exit
lib/R/library/base/help/options
lib/R/library/base/help/order
lib/R/library/base/help/outer
-lib/R/library/base/help/package_version
lib/R/library/base/help/parse
lib/R/library/base/help/paste
lib/R/library/base/help/path.expand
@@ -1352,7 +1368,6 @@
lib/R/library/base/help/prod
lib/R/library/base/help/prop.table
lib/R/library/base/help/pushBack
-lib/R/library/base/help/putenv
lib/R/library/base/help/qr
lib/R/library/base/help/qraux
lib/R/library/base/help/quit
@@ -1361,7 +1376,6 @@
lib/R/library/base/help/rapply
lib/R/library/base/help/raw
lib/R/library/base/help/rawConversion
-lib/R/library/base/help/read.table
lib/R/library/base/help/readBin
lib/R/library/base/help/readChar
lib/R/library/base/help/readLines
@@ -1403,7 +1417,7 @@
lib/R/library/base/help/source
lib/R/library/base/help/split
lib/R/library/base/help/sprintf
-lib/R/library/base/help/stack
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