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[pkgsrc/trunk]: pkgsrc/math/py-scipy Update SciPy to 0.7.0

details:   https://anonhg.NetBSD.org/pkgsrc/rev/a6e07fe64b46
branches:  trunk
changeset: 562328:a6e07fe64b46
user:      markd <markd%pkgsrc.org@localhost>
date:      Sat Jul 25 12:16:45 2009 +0000

description:
Update SciPy to 0.7.0

SciPy 0.7.0 is the culmination of 16 months of hard work. It contains
many new features, numerous bug-fixes, improved test coverage and
better documentation.  There have been a number of deprecations and
API changes in this release, which are documented below.  All users
are encouraged to upgrade to this release, as there are a large number
of bug-fixes and optimizations.

diffstat:

 math/py-scipy/Makefile |    8 +-
 math/py-scipy/PLIST    |  709 ++++++++++++++++++++++++++++++++++++++----------
 math/py-scipy/distinfo |    8 +-
 3 files changed, 569 insertions(+), 156 deletions(-)

diffs (truncated from 1074 to 300 lines):

diff -r f68ce52445ee -r a6e07fe64b46 math/py-scipy/Makefile
--- a/math/py-scipy/Makefile    Sat Jul 25 12:08:26 2009 +0000
+++ b/math/py-scipy/Makefile    Sat Jul 25 12:16:45 2009 +0000
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.2 2009/02/11 22:50:09 joerg Exp $
+# $NetBSD: Makefile,v 1.3 2009/07/25 12:16:45 markd Exp $
 
-DISTNAME=      scipy-0.6.0
-PKGNAME=       ${PYPKGPREFIX}-scipy-0.6.0
+DISTNAME=      scipy-0.7.0
+PKGNAME=       ${PYPKGPREFIX}-scipy-0.7.0
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_SOURCEFORGE:=scipy/}
 
@@ -13,7 +13,7 @@
 
 PYDISTUTILSPKG=        yes
 PLIST_SUBST+=   PYPKGPREFIX=${PYPKGPREFIX}
-PYTHON_VERSIONS_ACCEPTED=   25 24
+PYTHON_VERSIONS_ACCEPTED=   26 25 24
 USE_LANGUAGES+=        c c++ fortran
 MAKE_ENV+=     ATLAS=None
 
diff -r f68ce52445ee -r a6e07fe64b46 math/py-scipy/PLIST
--- a/math/py-scipy/PLIST       Sat Jul 25 12:08:26 2009 +0000
+++ b/math/py-scipy/PLIST       Sat Jul 25 12:16:45 2009 +0000
@@ -1,9 +1,8 @@
-@comment $NetBSD: PLIST,v 1.2 2009/06/14 18:05:48 joerg Exp $
-${PYSITELIB}/scipy/DEVELOPERS.txt
-${PYSITELIB}/scipy/FORMAT_GUIDELINES.txt
+@comment $NetBSD: PLIST,v 1.3 2009/07/25 12:16:45 markd Exp $
 ${PYSITELIB}/scipy/INSTALL.txt
 ${PYSITELIB}/scipy/LATEST.txt
 ${PYSITELIB}/scipy/LICENSE.txt
+${PYSITELIB}/scipy/README.txt
 ${PYSITELIB}/scipy/THANKS.txt
 ${PYSITELIB}/scipy/TOCHANGE.txt
 ${PYSITELIB}/scipy/__config__.py
@@ -18,19 +17,77 @@
 ${PYSITELIB}/scipy/cluster/__init__.py
 ${PYSITELIB}/scipy/cluster/__init__.pyc
 ${PYSITELIB}/scipy/cluster/__init__.pyo
+${PYSITELIB}/scipy/cluster/_hierarchy_wrap.so
 ${PYSITELIB}/scipy/cluster/_vq.so
+${PYSITELIB}/scipy/cluster/hierarchy.py
+${PYSITELIB}/scipy/cluster/hierarchy.pyc
+${PYSITELIB}/scipy/cluster/hierarchy.pyo
 ${PYSITELIB}/scipy/cluster/info.py
 ${PYSITELIB}/scipy/cluster/info.pyc
 ${PYSITELIB}/scipy/cluster/info.pyo
 ${PYSITELIB}/scipy/cluster/setup.py
 ${PYSITELIB}/scipy/cluster/setup.pyc
 ${PYSITELIB}/scipy/cluster/setup.pyo
+${PYSITELIB}/scipy/cluster/setupscons.py
+${PYSITELIB}/scipy/cluster/setupscons.pyc
+${PYSITELIB}/scipy/cluster/setupscons.pyo
+${PYSITELIB}/scipy/cluster/tests/Q-X.txt
 ${PYSITELIB}/scipy/cluster/tests/data.txt
+${PYSITELIB}/scipy/cluster/tests/fclusterdata-maxclusts-2.txt
+${PYSITELIB}/scipy/cluster/tests/fclusterdata-maxclusts-3.txt
+${PYSITELIB}/scipy/cluster/tests/fclusterdata-maxclusts-4.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-Q-single-1.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-Q-single-2.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-Q-single-3.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-Q-single-4.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-Q-single-5.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-Q-single-6.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-complete-tdist-depth-1.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-complete-tdist-depth-2.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-complete-tdist-depth-3.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-complete-tdist-depth-4.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-single-tdist-depth-0.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-single-tdist-depth-1.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-single-tdist-depth-2.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-single-tdist-depth-3.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-single-tdist-depth-4.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-single-tdist-depth-5.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-single-tdist.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-weighted-tdist-depth-1.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-weighted-tdist-depth-2.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-weighted-tdist-depth-3.txt
+${PYSITELIB}/scipy/cluster/tests/inconsistent-weighted-tdist-depth-4.txt
+${PYSITELIB}/scipy/cluster/tests/iris.txt
+${PYSITELIB}/scipy/cluster/tests/linkage-Q-average.txt
+${PYSITELIB}/scipy/cluster/tests/linkage-Q-centroid.txt
+${PYSITELIB}/scipy/cluster/tests/linkage-Q-complete.txt
+${PYSITELIB}/scipy/cluster/tests/linkage-Q-median.txt
+${PYSITELIB}/scipy/cluster/tests/linkage-Q-single.txt
+${PYSITELIB}/scipy/cluster/tests/linkage-Q-ward.txt
+${PYSITELIB}/scipy/cluster/tests/linkage-Q-weighted.txt
+${PYSITELIB}/scipy/cluster/tests/linkage-X.txt
+${PYSITELIB}/scipy/cluster/tests/linkage-average-tdist.txt
+${PYSITELIB}/scipy/cluster/tests/linkage-complete-tdist.txt
+${PYSITELIB}/scipy/cluster/tests/linkage-single-tdist.txt
+${PYSITELIB}/scipy/cluster/tests/linkage-weighted-tdist.txt
+${PYSITELIB}/scipy/cluster/tests/test_hierarchy.py
 ${PYSITELIB}/scipy/cluster/tests/test_vq.py
 ${PYSITELIB}/scipy/cluster/tests/vq_test.py
 ${PYSITELIB}/scipy/cluster/vq.py
 ${PYSITELIB}/scipy/cluster/vq.pyc
 ${PYSITELIB}/scipy/cluster/vq.pyo
+${PYSITELIB}/scipy/constants/__init__.py
+${PYSITELIB}/scipy/constants/__init__.pyc
+${PYSITELIB}/scipy/constants/__init__.pyo
+${PYSITELIB}/scipy/constants/codata.py
+${PYSITELIB}/scipy/constants/codata.pyc
+${PYSITELIB}/scipy/constants/codata.pyo
+${PYSITELIB}/scipy/constants/constants.py
+${PYSITELIB}/scipy/constants/constants.pyc
+${PYSITELIB}/scipy/constants/constants.pyo
+${PYSITELIB}/scipy/constants/setup.py
+${PYSITELIB}/scipy/constants/setup.pyc
+${PYSITELIB}/scipy/constants/setup.pyo
 ${PYSITELIB}/scipy/fftpack/__init__.py
 ${PYSITELIB}/scipy/fftpack/__init__.pyc
 ${PYSITELIB}/scipy/fftpack/__init__.pyo
@@ -38,6 +95,8 @@
 ${PYSITELIB}/scipy/fftpack/basic.py
 ${PYSITELIB}/scipy/fftpack/basic.pyc
 ${PYSITELIB}/scipy/fftpack/basic.pyo
+${PYSITELIB}/scipy/fftpack/benchmarks/bench_basic.py
+${PYSITELIB}/scipy/fftpack/benchmarks/bench_pseudo_diffs.py
 ${PYSITELIB}/scipy/fftpack/convolve.so
 ${PYSITELIB}/scipy/fftpack/fftpack_version.py
 ${PYSITELIB}/scipy/fftpack/fftpack_version.pyc
@@ -54,6 +113,9 @@
 ${PYSITELIB}/scipy/fftpack/setup.py
 ${PYSITELIB}/scipy/fftpack/setup.pyc
 ${PYSITELIB}/scipy/fftpack/setup.pyo
+${PYSITELIB}/scipy/fftpack/setupscons.py
+${PYSITELIB}/scipy/fftpack/setupscons.pyc
+${PYSITELIB}/scipy/fftpack/setupscons.pyo
 ${PYSITELIB}/scipy/fftpack/tests/test_basic.py
 ${PYSITELIB}/scipy/fftpack/tests/test_helper.py
 ${PYSITELIB}/scipy/fftpack/tests/test_pseudo_diffs.py
@@ -80,6 +142,9 @@
 ${PYSITELIB}/scipy/integrate/setup.py
 ${PYSITELIB}/scipy/integrate/setup.pyc
 ${PYSITELIB}/scipy/integrate/setup.pyo
+${PYSITELIB}/scipy/integrate/setupscons.py
+${PYSITELIB}/scipy/integrate/setupscons.pyc
+${PYSITELIB}/scipy/integrate/setupscons.pyo
 ${PYSITELIB}/scipy/integrate/tests/test_integrate.py
 ${PYSITELIB}/scipy/integrate/tests/test_quadpack.py
 ${PYSITELIB}/scipy/integrate/tests/test_quadrature.py
@@ -88,6 +153,7 @@
 ${PYSITELIB}/scipy/interpolate/__init__.pyc
 ${PYSITELIB}/scipy/interpolate/__init__.pyo
 ${PYSITELIB}/scipy/interpolate/_fitpack.so
+${PYSITELIB}/scipy/interpolate/_interpolate.so
 ${PYSITELIB}/scipy/interpolate/dfitpack.so
 ${PYSITELIB}/scipy/interpolate/fitpack.py
 ${PYSITELIB}/scipy/interpolate/fitpack.pyc
@@ -101,15 +167,44 @@
 ${PYSITELIB}/scipy/interpolate/interpolate.py
 ${PYSITELIB}/scipy/interpolate/interpolate.pyc
 ${PYSITELIB}/scipy/interpolate/interpolate.pyo
+${PYSITELIB}/scipy/interpolate/interpolate_wrapper.py
+${PYSITELIB}/scipy/interpolate/interpolate_wrapper.pyc
+${PYSITELIB}/scipy/interpolate/interpolate_wrapper.pyo
+${PYSITELIB}/scipy/interpolate/polyint.py
+${PYSITELIB}/scipy/interpolate/polyint.pyc
+${PYSITELIB}/scipy/interpolate/polyint.pyo
+${PYSITELIB}/scipy/interpolate/rbf.py
+${PYSITELIB}/scipy/interpolate/rbf.pyc
+${PYSITELIB}/scipy/interpolate/rbf.pyo
 ${PYSITELIB}/scipy/interpolate/setup.py
 ${PYSITELIB}/scipy/interpolate/setup.pyc
 ${PYSITELIB}/scipy/interpolate/setup.pyo
-${PYSITELIB}/scipy/interpolate/tests/demos_xplt.py
+${PYSITELIB}/scipy/interpolate/setupscons.py
+${PYSITELIB}/scipy/interpolate/setupscons.pyc
+${PYSITELIB}/scipy/interpolate/setupscons.pyo
 ${PYSITELIB}/scipy/interpolate/tests/test_fitpack.py
 ${PYSITELIB}/scipy/interpolate/tests/test_interpolate.py
+${PYSITELIB}/scipy/interpolate/tests/test_interpolate_wrapper.py
+${PYSITELIB}/scipy/interpolate/tests/test_polyint.py
+${PYSITELIB}/scipy/interpolate/tests/test_rbf.py
 ${PYSITELIB}/scipy/io/__init__.py
 ${PYSITELIB}/scipy/io/__init__.pyc
 ${PYSITELIB}/scipy/io/__init__.pyo
+${PYSITELIB}/scipy/io/arff/__init__.py
+${PYSITELIB}/scipy/io/arff/__init__.pyc
+${PYSITELIB}/scipy/io/arff/__init__.pyo
+${PYSITELIB}/scipy/io/arff/arffread.py
+${PYSITELIB}/scipy/io/arff/arffread.pyc
+${PYSITELIB}/scipy/io/arff/arffread.pyo
+${PYSITELIB}/scipy/io/arff/myfunctools.py
+${PYSITELIB}/scipy/io/arff/myfunctools.pyc
+${PYSITELIB}/scipy/io/arff/myfunctools.pyo
+${PYSITELIB}/scipy/io/arff/setup.py
+${PYSITELIB}/scipy/io/arff/setup.pyc
+${PYSITELIB}/scipy/io/arff/setup.pyo
+${PYSITELIB}/scipy/io/arff/utils.py
+${PYSITELIB}/scipy/io/arff/utils.pyc
+${PYSITELIB}/scipy/io/arff/utils.pyo
 ${PYSITELIB}/scipy/io/array_import.py
 ${PYSITELIB}/scipy/io/array_import.pyc
 ${PYSITELIB}/scipy/io/array_import.pyo
@@ -131,18 +226,101 @@
 ${PYSITELIB}/scipy/io/info.py
 ${PYSITELIB}/scipy/io/info.pyc
 ${PYSITELIB}/scipy/io/info.pyo
-${PYSITELIB}/scipy/io/mio.py
-${PYSITELIB}/scipy/io/mio.pyc
-${PYSITELIB}/scipy/io/mio.pyo
-${PYSITELIB}/scipy/io/mio4.py
-${PYSITELIB}/scipy/io/mio4.pyc
-${PYSITELIB}/scipy/io/mio4.pyo
-${PYSITELIB}/scipy/io/mio5.py
-${PYSITELIB}/scipy/io/mio5.pyc
-${PYSITELIB}/scipy/io/mio5.pyo
-${PYSITELIB}/scipy/io/miobase.py
-${PYSITELIB}/scipy/io/miobase.pyc
-${PYSITELIB}/scipy/io/miobase.pyo
+${PYSITELIB}/scipy/io/matlab/__init__.py
+${PYSITELIB}/scipy/io/matlab/__init__.pyc
+${PYSITELIB}/scipy/io/matlab/__init__.pyo
+${PYSITELIB}/scipy/io/matlab/byteordercodes.py
+${PYSITELIB}/scipy/io/matlab/byteordercodes.pyc
+${PYSITELIB}/scipy/io/matlab/byteordercodes.pyo
+${PYSITELIB}/scipy/io/matlab/gzipstreams.py
+${PYSITELIB}/scipy/io/matlab/gzipstreams.pyc
+${PYSITELIB}/scipy/io/matlab/gzipstreams.pyo
+${PYSITELIB}/scipy/io/matlab/mio.py
+${PYSITELIB}/scipy/io/matlab/mio.pyc
+${PYSITELIB}/scipy/io/matlab/mio.pyo
+${PYSITELIB}/scipy/io/matlab/mio4.py
+${PYSITELIB}/scipy/io/matlab/mio4.pyc
+${PYSITELIB}/scipy/io/matlab/mio4.pyo
+${PYSITELIB}/scipy/io/matlab/mio5.py
+${PYSITELIB}/scipy/io/matlab/mio5.pyc
+${PYSITELIB}/scipy/io/matlab/mio5.pyo
+${PYSITELIB}/scipy/io/matlab/miobase.py
+${PYSITELIB}/scipy/io/matlab/miobase.pyc
+${PYSITELIB}/scipy/io/matlab/miobase.pyo
+${PYSITELIB}/scipy/io/matlab/setup.py
+${PYSITELIB}/scipy/io/matlab/setup.pyc
+${PYSITELIB}/scipy/io/matlab/setup.pyo
+${PYSITELIB}/scipy/io/matlab/tests/data/japanese_utf8.txt
+${PYSITELIB}/scipy/io/matlab/tests/data/test3dmatrix_6.1_SOL2.mat
+${PYSITELIB}/scipy/io/matlab/tests/data/test3dmatrix_6.5.1_GLNX86.mat
+${PYSITELIB}/scipy/io/matlab/tests/data/test3dmatrix_7.1_GLNX86.mat
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+${PYSITELIB}/scipy/io/matlab/tests/data/testcellnest_7.1_GLNX86.mat
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+${PYSITELIB}/scipy/io/matlab/tests/data/testsparsecomplex_7.1_GLNX86.mat
+${PYSITELIB}/scipy/io/matlab/tests/data/teststring_4.2c_SOL2.mat
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+${PYSITELIB}/scipy/io/matlab/tests/data/teststringarray_6.1_SOL2.mat
+${PYSITELIB}/scipy/io/matlab/tests/data/teststringarray_6.5.1_GLNX86.mat
+${PYSITELIB}/scipy/io/matlab/tests/data/teststringarray_7.1_GLNX86.mat
+${PYSITELIB}/scipy/io/matlab/tests/data/teststruct_6.1_SOL2.mat
+${PYSITELIB}/scipy/io/matlab/tests/data/teststruct_6.5.1_GLNX86.mat
+${PYSITELIB}/scipy/io/matlab/tests/data/teststruct_7.1_GLNX86.mat
+${PYSITELIB}/scipy/io/matlab/tests/data/teststructarr_6.1_SOL2.mat
+${PYSITELIB}/scipy/io/matlab/tests/data/teststructarr_6.5.1_GLNX86.mat
+${PYSITELIB}/scipy/io/matlab/tests/data/teststructarr_7.1_GLNX86.mat
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