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[pkgsrc/trunk]: pkgsrc/biology/biolibc biology/biolibc: Update to 0.2.1

details:   https://anonhg.NetBSD.org/pkgsrc/rev/9ad6f171af84
branches:  trunk
changeset: 771186:9ad6f171af84
user:      bacon <bacon%pkgsrc.org@localhost>
date:      Tue Dec 14 18:58:56 2021 +0000

description:
biology/biolibc: Update to 0.2.1

Add orf.c with start/stop codon locators
Standardize BED and GFF APIs
Implement VCF input filtering
Eliminate mutator macros mirroring mutator functions
Numerous minor bug fixes and enhancements

Changes: https://github.com/auerlab/biolibc/releases/tag/0.2.1

diffstat:

 biology/biolibc/Makefile            |    7 +-
 biology/biolibc/PLIST               |  470 +++++++++++------------------------
 biology/biolibc/buildlink3.mk       |    6 +-
 biology/biolibc/distinfo            |    8 +-
 biology/biolibc/files/plist-mods.sh |    4 -
 5 files changed, 158 insertions(+), 337 deletions(-)

diffs (truncated from 570 to 300 lines):

diff -r c30c30ab2655 -r 9ad6f171af84 biology/biolibc/Makefile
--- a/biology/biolibc/Makefile  Tue Dec 14 18:55:23 2021 +0000
+++ b/biology/biolibc/Makefile  Tue Dec 14 18:58:56 2021 +0000
@@ -1,9 +1,8 @@
-# $NetBSD: Makefile,v 1.6 2021/09/18 00:42:39 bacon Exp $
+# $NetBSD: Makefile,v 1.7 2021/12/14 18:58:56 bacon Exp $
 
-DISTNAME=      biolibc-0.2.0.11
+DISTNAME=      biolibc-0.2.1
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=    65b3b132c813bb04b3a9886d08f51af8137a60e6
 
 MAINTAINER=    bacon%NetBSD.org@localhost
 HOMEPAGE=      https://github.com/auerlab/biolibc
@@ -17,11 +16,9 @@
 INSTALL_TARGET=        apple-install
 .else
 INSTALL_TARGET=        install-strip
-PLIST.cs=      yes
 .endif
 
 MAKE_ENV+=     DYLIB_PATH=${PREFIX}/lib MANDIR=${PREFIX}/${PKGMANDIR}
-PLIST_VARS=    cs
 
 pre-build:
        cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend
diff -r c30c30ab2655 -r 9ad6f171af84 biology/biolibc/PLIST
--- a/biology/biolibc/PLIST     Tue Dec 14 18:55:23 2021 +0000
+++ b/biology/biolibc/PLIST     Tue Dec 14 18:58:56 2021 +0000
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.6 2021/09/18 00:42:39 bacon Exp $
+@comment $NetBSD: PLIST,v 1.7 2021/12/14 18:58:56 bacon Exp $
 include/biolibc/bed.h
 include/biolibc/biolibc.h
 include/biolibc/biostring.h
@@ -10,331 +10,155 @@
 include/biolibc/pos-list.h
 include/biolibc/sam-buff.h
 include/biolibc/sam.h
+include/biolibc/translate.h
 include/biolibc/vcf.h
 lib/libbiolibc.a
 lib/libbiolibc.so
 lib/libbiolibc.so.2
 lib/libbiolibc.so.2.0
-${PLIST.cs}man/man3/BL_BED_BLOCK_COUNT.3
-${PLIST.cs}man/man3/BL_BED_BLOCK_SIZES.3
-${PLIST.cs}man/man3/BL_BED_BLOCK_SIZES_AE.3
-${PLIST.cs}man/man3/BL_BED_BLOCK_STARTS.3
-${PLIST.cs}man/man3/BL_BED_BLOCK_STARTS_AE.3
-${PLIST.cs}man/man3/BL_BED_CHROM.3
-${PLIST.cs}man/man3/BL_BED_CHROM_AE.3
-${PLIST.cs}man/man3/BL_BED_CHROM_END.3
-${PLIST.cs}man/man3/BL_BED_CHROM_START.3
-${PLIST.cs}man/man3/BL_BED_FIELDS.3
-${PLIST.cs}man/man3/BL_BED_ITEM_RGB.3
-${PLIST.cs}man/man3/BL_BED_ITEM_RGB_AE.3
-${PLIST.cs}man/man3/BL_BED_NAME.3
-${PLIST.cs}man/man3/BL_BED_NAME_AE.3
-${PLIST.cs}man/man3/BL_BED_SCORE.3
-${PLIST.cs}man/man3/BL_BED_SET_BLOCK_COUNT.3
-${PLIST.cs}man/man3/BL_BED_SET_BLOCK_SIZES.3
-${PLIST.cs}man/man3/BL_BED_SET_BLOCK_SIZES_AE.3
-${PLIST.cs}man/man3/BL_BED_SET_BLOCK_SIZES_CPY.3
-${PLIST.cs}man/man3/BL_BED_SET_BLOCK_STARTS.3
-${PLIST.cs}man/man3/BL_BED_SET_BLOCK_STARTS_AE.3
-${PLIST.cs}man/man3/BL_BED_SET_BLOCK_STARTS_CPY.3
-${PLIST.cs}man/man3/BL_BED_SET_CHROM.3
-${PLIST.cs}man/man3/BL_BED_SET_CHROM_AE.3
-${PLIST.cs}man/man3/BL_BED_SET_CHROM_CPY.3
-${PLIST.cs}man/man3/BL_BED_SET_CHROM_END.3
-${PLIST.cs}man/man3/BL_BED_SET_CHROM_START.3
-${PLIST.cs}man/man3/BL_BED_SET_FIELDS.3
-${PLIST.cs}man/man3/BL_BED_SET_ITEM_RGB.3
-${PLIST.cs}man/man3/BL_BED_SET_ITEM_RGB_AE.3
-${PLIST.cs}man/man3/BL_BED_SET_ITEM_RGB_CPY.3
-${PLIST.cs}man/man3/BL_BED_SET_NAME.3
-${PLIST.cs}man/man3/BL_BED_SET_NAME_AE.3
-${PLIST.cs}man/man3/BL_BED_SET_NAME_CPY.3
-${PLIST.cs}man/man3/BL_BED_SET_SCORE.3
-${PLIST.cs}man/man3/BL_BED_SET_STRAND.3
-${PLIST.cs}man/man3/BL_BED_SET_THICK_END.3
-${PLIST.cs}man/man3/BL_BED_SET_THICK_START.3
-${PLIST.cs}man/man3/BL_BED_STRAND.3
-${PLIST.cs}man/man3/BL_BED_THICK_END.3
-${PLIST.cs}man/man3/BL_BED_THICK_START.3
-${PLIST.cs}man/man3/BL_FASTA_DESC.3
-${PLIST.cs}man/man3/BL_FASTA_DESC_AE.3
-${PLIST.cs}man/man3/BL_FASTA_DESC_ARRAY_SIZE.3
-${PLIST.cs}man/man3/BL_FASTA_DESC_LEN.3
-${PLIST.cs}man/man3/BL_FASTA_SEQ.3
-${PLIST.cs}man/man3/BL_FASTA_SEQ_AE.3
-${PLIST.cs}man/man3/BL_FASTA_SEQ_ARRAY_SIZE.3
-${PLIST.cs}man/man3/BL_FASTA_SEQ_LEN.3
-${PLIST.cs}man/man3/BL_FASTA_SET_DESC.3
-${PLIST.cs}man/man3/BL_FASTA_SET_DESC_AE.3
-${PLIST.cs}man/man3/BL_FASTA_SET_DESC_ARRAY_SIZE.3
-${PLIST.cs}man/man3/BL_FASTA_SET_DESC_CPY.3
-${PLIST.cs}man/man3/BL_FASTA_SET_DESC_LEN.3
-${PLIST.cs}man/man3/BL_FASTA_SET_SEQ.3
-${PLIST.cs}man/man3/BL_FASTA_SET_SEQ_AE.3
-${PLIST.cs}man/man3/BL_FASTA_SET_SEQ_ARRAY_SIZE.3
-${PLIST.cs}man/man3/BL_FASTA_SET_SEQ_CPY.3
-${PLIST.cs}man/man3/BL_FASTA_SET_SEQ_LEN.3
-${PLIST.cs}man/man3/BL_FASTQ_DESC.3
-${PLIST.cs}man/man3/BL_FASTQ_DESC_AE.3
-${PLIST.cs}man/man3/BL_FASTQ_DESC_ARRAY_SIZE.3
-${PLIST.cs}man/man3/BL_FASTQ_DESC_LEN.3
-${PLIST.cs}man/man3/BL_FASTQ_PLUS.3
-${PLIST.cs}man/man3/BL_FASTQ_PLUS_AE.3
-${PLIST.cs}man/man3/BL_FASTQ_PLUS_ARRAY_SIZE.3
-${PLIST.cs}man/man3/BL_FASTQ_PLUS_LEN.3
-${PLIST.cs}man/man3/BL_FASTQ_QUAL.3
-${PLIST.cs}man/man3/BL_FASTQ_QUAL_AE.3
-${PLIST.cs}man/man3/BL_FASTQ_QUAL_ARRAY_SIZE.3
-${PLIST.cs}man/man3/BL_FASTQ_QUAL_LEN.3
-${PLIST.cs}man/man3/BL_FASTQ_SEQ.3
-${PLIST.cs}man/man3/BL_FASTQ_SEQ_AE.3
-${PLIST.cs}man/man3/BL_FASTQ_SEQ_ARRAY_SIZE.3
-${PLIST.cs}man/man3/BL_FASTQ_SEQ_LEN.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_DESC.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_DESC_AE.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_DESC_ARRAY_SIZE.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_DESC_CPY.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_DESC_LEN.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_PLUS.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_PLUS_AE.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_PLUS_ARRAY_SIZE.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_PLUS_CPY.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_PLUS_LEN.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_QUAL.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_QUAL_AE.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_QUAL_ARRAY_SIZE.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_QUAL_CPY.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_QUAL_LEN.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_SEQ.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_SEQ_AE.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_SEQ_ARRAY_SIZE.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_SEQ_CPY.3
-${PLIST.cs}man/man3/BL_FASTQ_SET_SEQ_LEN.3
-${PLIST.cs}man/man3/BL_GFF_ATTRIBUTES.3
-${PLIST.cs}man/man3/BL_GFF_ATTRIBUTES_AE.3
-${PLIST.cs}man/man3/BL_GFF_END.3
-${PLIST.cs}man/man3/BL_GFF_FEATURE.3
-${PLIST.cs}man/man3/BL_GFF_FEATURE_AE.3
-${PLIST.cs}man/man3/BL_GFF_FEATURE_ID.3
-${PLIST.cs}man/man3/BL_GFF_FEATURE_ID_AE.3
-${PLIST.cs}man/man3/BL_GFF_GENE_NAME.3
-${PLIST.cs}man/man3/BL_GFF_GENE_NAME_AE.3
-${PLIST.cs}man/man3/BL_GFF_PHASE.3
-${PLIST.cs}man/man3/BL_GFF_SCORE.3
-${PLIST.cs}man/man3/BL_GFF_SEQUENCE.3
-${PLIST.cs}man/man3/BL_GFF_SEQUENCE_AE.3
-${PLIST.cs}man/man3/BL_GFF_SET_ATTRIBUTES.3
-${PLIST.cs}man/man3/BL_GFF_SET_ATTRIBUTES_AE.3
-${PLIST.cs}man/man3/BL_GFF_SET_ATTRIBUTES_CPY.3
-${PLIST.cs}man/man3/BL_GFF_SET_END.3
-${PLIST.cs}man/man3/BL_GFF_SET_FEATURE.3
-${PLIST.cs}man/man3/BL_GFF_SET_FEATURE_AE.3
-${PLIST.cs}man/man3/BL_GFF_SET_FEATURE_CPY.3
-${PLIST.cs}man/man3/BL_GFF_SET_FEATURE_ID.3
-${PLIST.cs}man/man3/BL_GFF_SET_FEATURE_ID_AE.3
-${PLIST.cs}man/man3/BL_GFF_SET_FEATURE_ID_CPY.3
-${PLIST.cs}man/man3/BL_GFF_SET_GENE_NAME.3
-${PLIST.cs}man/man3/BL_GFF_SET_GENE_NAME_AE.3
-${PLIST.cs}man/man3/BL_GFF_SET_GENE_NAME_CPY.3
-${PLIST.cs}man/man3/BL_GFF_SET_PHASE.3
-${PLIST.cs}man/man3/BL_GFF_SET_SCORE.3
-${PLIST.cs}man/man3/BL_GFF_SET_SEQUENCE.3
-${PLIST.cs}man/man3/BL_GFF_SET_SEQUENCE_AE.3
-${PLIST.cs}man/man3/BL_GFF_SET_SEQUENCE_CPY.3
-${PLIST.cs}man/man3/BL_GFF_SET_SOURCE.3
-${PLIST.cs}man/man3/BL_GFF_SET_SOURCE_AE.3
-${PLIST.cs}man/man3/BL_GFF_SET_SOURCE_CPY.3
-${PLIST.cs}man/man3/BL_GFF_SET_START.3
-${PLIST.cs}man/man3/BL_GFF_SET_STRAND.3
-${PLIST.cs}man/man3/BL_GFF_SOURCE.3
-${PLIST.cs}man/man3/BL_GFF_SOURCE_AE.3
-${PLIST.cs}man/man3/BL_GFF_START.3
-${PLIST.cs}man/man3/BL_GFF_STRAND.3
-${PLIST.cs}man/man3/BL_OVERLAP_FEATURE1_LEN.3
-${PLIST.cs}man/man3/BL_OVERLAP_FEATURE2_LEN.3
-${PLIST.cs}man/man3/BL_OVERLAP_OVERLAP_END.3
-${PLIST.cs}man/man3/BL_OVERLAP_OVERLAP_LEN.3
-${PLIST.cs}man/man3/BL_OVERLAP_OVERLAP_START.3
-${PLIST.cs}man/man3/BL_OVERLAP_SET_FEATURE1_LEN.3
-${PLIST.cs}man/man3/BL_OVERLAP_SET_FEATURE2_LEN.3
-${PLIST.cs}man/man3/BL_OVERLAP_SET_OVERLAP_END.3
-${PLIST.cs}man/man3/BL_OVERLAP_SET_OVERLAP_LEN.3
-${PLIST.cs}man/man3/BL_OVERLAP_SET_OVERLAP_START.3
-${PLIST.cs}man/man3/BL_POS_LIST_ARRAY_SIZE.3
-${PLIST.cs}man/man3/BL_POS_LIST_COUNT.3
-${PLIST.cs}man/man3/BL_POS_LIST_POSITIONS.3
-${PLIST.cs}man/man3/BL_POS_LIST_POSITIONS_AE.3
-${PLIST.cs}man/man3/BL_POS_LIST_SET_ARRAY_SIZE.3
-${PLIST.cs}man/man3/BL_POS_LIST_SET_COUNT.3
-${PLIST.cs}man/man3/BL_POS_LIST_SET_POSITIONS.3
-${PLIST.cs}man/man3/BL_POS_LIST_SET_POSITIONS_AE.3
-${PLIST.cs}man/man3/BL_POS_LIST_SET_POSITIONS_CPY.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_ALIGNMENTS.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_ALIGNMENTS_AE.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_BUFFERED_COUNT.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_BUFF_SIZE.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_DISCARDED_ALIGNMENTS.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_DISCARDED_SCORE_SUM.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_DISCARDED_TRAILING.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_INC_DISCARDED_TRAILING.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_INC_TOTAL_ALIGNMENTS.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_INC_TRAILING_ALIGNMENTS.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_MAPQ_HIGH.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_MAPQ_LOW.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_MAPQ_MIN.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_MAPQ_SUM.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_MAX_COUNT.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_MAX_DISCARDED_SCORE.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_MIN_DISCARDED_SCORE.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_PREVIOUS_POS.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_PREVIOUS_RNAME.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_PREVIOUS_RNAME_AE.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_READS_USED.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_ALIGNMENTS.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_ALIGNMENTS_AE.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_ALIGNMENTS_CPY.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_BUFFERED_COUNT.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_BUFF_SIZE.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_DISCARDED_ALIGNMENTS.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_DISCARDED_SCORE_SUM.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_DISCARDED_TRAILING.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_MAPQ_HIGH.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_MAPQ_LOW.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_MAPQ_MIN.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_MAPQ_SUM.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_MAX_COUNT.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_MAX_DISCARDED_SCORE.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_MIN_DISCARDED_SCORE.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_PREVIOUS_POS.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_PREVIOUS_RNAME.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_PREVIOUS_RNAME_AE.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_PREVIOUS_RNAME_CPY.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_READS_USED.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_TOTAL_ALIGNMENTS.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_TRAILING_ALIGNMENTS.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_SET_UNMAPPED_ALIGNMENTS.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_TOTAL_ALIGNMENTS.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_TRAILING_ALIGNMENTS.3
-${PLIST.cs}man/man3/BL_SAM_BUFF_UNMAPPED_ALIGNMENTS.3
-${PLIST.cs}man/man3/BL_SAM_CIGAR.3
-${PLIST.cs}man/man3/BL_SAM_CIGAR_AE.3
-${PLIST.cs}man/man3/BL_SAM_FLAG.3
-${PLIST.cs}man/man3/BL_SAM_MAPQ.3
-${PLIST.cs}man/man3/BL_SAM_PNEXT.3
-${PLIST.cs}man/man3/BL_SAM_POS.3
-${PLIST.cs}man/man3/BL_SAM_QNAME.3
-${PLIST.cs}man/man3/BL_SAM_QNAME_AE.3
-${PLIST.cs}man/man3/BL_SAM_QUAL.3
-${PLIST.cs}man/man3/BL_SAM_QUAL_AE.3
-${PLIST.cs}man/man3/BL_SAM_QUAL_LEN.3
-${PLIST.cs}man/man3/BL_SAM_RNAME.3
-${PLIST.cs}man/man3/BL_SAM_RNAME_AE.3
-${PLIST.cs}man/man3/BL_SAM_RNEXT.3
-${PLIST.cs}man/man3/BL_SAM_RNEXT_AE.3
-${PLIST.cs}man/man3/BL_SAM_SEQ.3
-${PLIST.cs}man/man3/BL_SAM_SEQ_AE.3
-${PLIST.cs}man/man3/BL_SAM_SEQ_LEN.3
-${PLIST.cs}man/man3/BL_SAM_SET_CIGAR.3
-${PLIST.cs}man/man3/BL_SAM_SET_CIGAR_AE.3
-${PLIST.cs}man/man3/BL_SAM_SET_CIGAR_CPY.3
-${PLIST.cs}man/man3/BL_SAM_SET_FLAG.3
-${PLIST.cs}man/man3/BL_SAM_SET_MAPQ.3
-${PLIST.cs}man/man3/BL_SAM_SET_PNEXT.3
-${PLIST.cs}man/man3/BL_SAM_SET_POS.3
-${PLIST.cs}man/man3/BL_SAM_SET_QNAME.3
-${PLIST.cs}man/man3/BL_SAM_SET_QNAME_AE.3
-${PLIST.cs}man/man3/BL_SAM_SET_QNAME_CPY.3
-${PLIST.cs}man/man3/BL_SAM_SET_QUAL.3
-${PLIST.cs}man/man3/BL_SAM_SET_QUAL_AE.3
-${PLIST.cs}man/man3/BL_SAM_SET_QUAL_CPY.3
-${PLIST.cs}man/man3/BL_SAM_SET_QUAL_LEN.3
-${PLIST.cs}man/man3/BL_SAM_SET_RNAME.3
-${PLIST.cs}man/man3/BL_SAM_SET_RNAME_AE.3
-${PLIST.cs}man/man3/BL_SAM_SET_RNAME_CPY.3
-${PLIST.cs}man/man3/BL_SAM_SET_RNEXT.3
-${PLIST.cs}man/man3/BL_SAM_SET_RNEXT_AE.3
-${PLIST.cs}man/man3/BL_SAM_SET_RNEXT_CPY.3
-${PLIST.cs}man/man3/BL_SAM_SET_SEQ.3
-${PLIST.cs}man/man3/BL_SAM_SET_SEQ_AE.3
-${PLIST.cs}man/man3/BL_SAM_SET_SEQ_CPY.3
-${PLIST.cs}man/man3/BL_SAM_SET_SEQ_LEN.3
-${PLIST.cs}man/man3/BL_SAM_SET_TLEN.3
-${PLIST.cs}man/man3/BL_SAM_TLEN.3
-${PLIST.cs}man/man3/BL_VCF_ALT.3
-${PLIST.cs}man/man3/BL_VCF_ALT_AE.3
-${PLIST.cs}man/man3/BL_VCF_ALT_COUNT.3
-${PLIST.cs}man/man3/BL_VCF_CHROM.3
-${PLIST.cs}man/man3/BL_VCF_CHROM_AE.3
-${PLIST.cs}man/man3/BL_VCF_FILTER.3
-${PLIST.cs}man/man3/BL_VCF_FILTER_AE.3
-${PLIST.cs}man/man3/BL_VCF_FORMAT.3
-${PLIST.cs}man/man3/BL_VCF_FORMAT_AE.3
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