[pkgsrc/trunk]: pkgsrc/math/py-tables py-tables: update to 3.7.0.

[wiz <wiz%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/65c04b3dad2b
branches:  trunk
changeset: 371115:65c04b3dad2b
user:      wiz <wiz%pkgsrc.org@localhost>
date:      Wed Jan 05 07:05:39 2022 +0000

description:
py-tables: update to 3.7.0.

This is a minor version of PyTables.  The main feature added is that
compatibility with Python 3.10, numpy 1.21 and HDF5 1.12 has been improved,
while support for Python 3.5 has been dropped.

The CI infrastructure has been moved to GitHub Actions.

diffstat:

 math/py-tables/Makefile |  14 +++++++-------
 math/py-tables/PLIST    |  24 +++++++++++++++++++++++-
 math/py-tables/distinfo |   8 ++++----
 3 files changed, 34 insertions(+), 12 deletions(-)

diffs (148 lines):

diff -r db9d67729780 -r 65c04b3dad2b math/py-tables/Makefile
--- a/math/py-tables/Makefile   Wed Jan 05 01:14:38 2022 +0000
+++ b/math/py-tables/Makefile   Wed Jan 05 07:05:39 2022 +0000
@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.10 2022/01/04 20:54:17 wiz Exp $
+# $NetBSD: Makefile,v 1.11 2022/01/05 07:05:39 wiz Exp $
 
-DISTNAME=      tables-3.6.1
+DISTNAME=      tables-3.7.0
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
-PKGREVISION=   2
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=t/tables/}
 
@@ -16,10 +15,8 @@
 PYSETUPBUILDARGS+=     --hdf5=${BUILDLINK_PREFIX.hdf5}
 PYSETUPBUILDARGS+=     --lzo=${BUILDLINK_PREFIX.lzo}
 
-DEPENDS+=      ${PYPKGPREFIX}-cython-[0-9]*:../../devel/py-cython
+DEPENDS+=      ${PYPKGPREFIX}-packaging-[0-9]*:../../devel/py-packaging
 DEPENDS+=      ${PYPKGPREFIX}-numexpr>=2.6.2:../../math/py-numexpr
-DEPENDS+=      ${PYPKGPREFIX}-mock>=2.0:../../devel/py-mock
-DEPENDS+=      ${PYPKGPREFIX}-six>=1.9.0:../../lang/py-six
 
 USE_LANGUAGES= c c++
 
@@ -32,8 +29,11 @@
        ${MV} ptrepack ptrepack-${PYVERSSUFFIX} && \
        ${MV} pttree pttree-${PYVERSSUFFIX} || ${TRUE}
 
+# needs to be installed first
+# as of 3.7.0:
+# FAILED (errors=2, skipped=55)
 do-test:
-       cd ${WRKSRC}/tables/tests && ${PYTHONBIN} test_all.py
+       ${PYTHONBIN} -m tables.tests.test_all
 
 .include "../../archivers/bzip2/buildlink3.mk"
 .include "../../archivers/lzo/buildlink3.mk"
diff -r db9d67729780 -r 65c04b3dad2b math/py-tables/PLIST
--- a/math/py-tables/PLIST      Wed Jan 05 01:14:38 2022 +0000
+++ b/math/py-tables/PLIST      Wed Jan 05 07:05:39 2022 +0000
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.3 2019/11/13 20:56:08 adam Exp $
+@comment $NetBSD: PLIST,v 1.4 2022/01/05 07:05:39 wiz Exp $
 bin/pt2to3-${PYVERSSUFFIX}
 bin/ptdump-${PYVERSSUFFIX}
 bin/ptrepack-${PYVERSSUFFIX}
@@ -13,7 +13,11 @@
 ${PYSITELIB}/tables/__init__.py
 ${PYSITELIB}/tables/__init__.pyc
 ${PYSITELIB}/tables/__init__.pyo
+${PYSITELIB}/tables/_comp_bzip2.c
+${PYSITELIB}/tables/_comp_bzip2.pyx
 ${PYSITELIB}/tables/_comp_bzip2.so
+${PYSITELIB}/tables/_comp_lzo.c
+${PYSITELIB}/tables/_comp_lzo.pyx
 ${PYSITELIB}/tables/_comp_lzo.so
 ${PYSITELIB}/tables/array.py
 ${PYSITELIB}/tables/array.pyc
@@ -30,6 +34,7 @@
 ${PYSITELIB}/tables/conditions.py
 ${PYSITELIB}/tables/conditions.pyc
 ${PYSITELIB}/tables/conditions.pyo
+${PYSITELIB}/tables/definitions.pxd
 ${PYSITELIB}/tables/description.py
 ${PYSITELIB}/tables/description.pyc
 ${PYSITELIB}/tables/description.pyo
@@ -54,6 +59,9 @@
 ${PYSITELIB}/tables/group.py
 ${PYSITELIB}/tables/group.pyc
 ${PYSITELIB}/tables/group.pyo
+${PYSITELIB}/tables/hdf5extension.c
+${PYSITELIB}/tables/hdf5extension.pxd
+${PYSITELIB}/tables/hdf5extension.pyx
 ${PYSITELIB}/tables/hdf5extension.so
 ${PYSITELIB}/tables/idxutils.py
 ${PYSITELIB}/tables/idxutils.pyc
@@ -64,6 +72,8 @@
 ${PYSITELIB}/tables/indexes.py
 ${PYSITELIB}/tables/indexes.pyc
 ${PYSITELIB}/tables/indexes.pyo
+${PYSITELIB}/tables/indexesextension.c
+${PYSITELIB}/tables/indexesextension.pyx
 ${PYSITELIB}/tables/indexesextension.so
 ${PYSITELIB}/tables/leaf.py
 ${PYSITELIB}/tables/leaf.pyc
@@ -71,7 +81,12 @@
 ${PYSITELIB}/tables/link.py
 ${PYSITELIB}/tables/link.pyc
 ${PYSITELIB}/tables/link.pyo
+${PYSITELIB}/tables/linkextension.c
+${PYSITELIB}/tables/linkextension.pyx
 ${PYSITELIB}/tables/linkextension.so
+${PYSITELIB}/tables/lrucacheextension.c
+${PYSITELIB}/tables/lrucacheextension.pxd
+${PYSITELIB}/tables/lrucacheextension.pyx
 ${PYSITELIB}/tables/lrucacheextension.so
 ${PYSITELIB}/tables/misc/__init__.py
 ${PYSITELIB}/tables/misc/__init__.pyc
@@ -130,6 +145,8 @@
 ${PYSITELIB}/tables/table.py
 ${PYSITELIB}/tables/table.pyc
 ${PYSITELIB}/tables/table.pyo
+${PYSITELIB}/tables/tableextension.c
+${PYSITELIB}/tables/tableextension.pyx
 ${PYSITELIB}/tables/tableextension.so
 ${PYSITELIB}/tables/tests/Table2_1_lzo_nrv2e_shuffle.h5
 ${PYSITELIB}/tables/tests/Tables_lzo1.h5
@@ -149,6 +166,7 @@
 ${PYSITELIB}/tables/tests/common.py
 ${PYSITELIB}/tables/tests/common.pyc
 ${PYSITELIB}/tables/tests/common.pyo
+${PYSITELIB}/tables/tests/create-nested-type.c
 ${PYSITELIB}/tables/tests/create_backcompat_indexes.py
 ${PYSITELIB}/tables/tests/create_backcompat_indexes.pyc
 ${PYSITELIB}/tables/tests/create_backcompat_indexes.pyo
@@ -167,6 +185,7 @@
 ${PYSITELIB}/tables/tests/nested-type-with-gaps.h5
 ${PYSITELIB}/tables/tests/non-chunked-table.h5
 ${PYSITELIB}/tables/tests/oldflavor_numeric.h5
+${PYSITELIB}/tables/tests/out_of_order_types.h5
 ${PYSITELIB}/tables/tests/python2.h5
 ${PYSITELIB}/tables/tests/python3.h5
 ${PYSITELIB}/tables/tests/scalar.h5
@@ -292,6 +311,9 @@
 ${PYSITELIB}/tables/utils.py
 ${PYSITELIB}/tables/utils.pyc
 ${PYSITELIB}/tables/utils.pyo
+${PYSITELIB}/tables/utilsextension.c
+${PYSITELIB}/tables/utilsextension.pxd
+${PYSITELIB}/tables/utilsextension.pyx
 ${PYSITELIB}/tables/utilsextension.so
 ${PYSITELIB}/tables/vlarray.py
 ${PYSITELIB}/tables/vlarray.pyc
diff -r db9d67729780 -r 65c04b3dad2b math/py-tables/distinfo
--- a/math/py-tables/distinfo   Wed Jan 05 01:14:38 2022 +0000
+++ b/math/py-tables/distinfo   Wed Jan 05 07:05:39 2022 +0000
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.6 2021/10/26 10:56:05 nia Exp $
+$NetBSD: distinfo,v 1.7 2022/01/05 07:05:39 wiz Exp $
 
-BLAKE2s (tables-3.6.1.tar.gz) = 4a1615c8c25736fc4b1c10f11b8f72552c417d2f35dc9e376cb56dc705202c8f
-SHA512 (tables-3.6.1.tar.gz) = 7f018b70251095049bce9075be4e19f72efba9d39121a35c4521f634b1dd5b81ab6de47df3bb44ad6b8b2dbdbff4e6d0985ad1a7b2f13b44f920c0935e5830ff
-Size (tables-3.6.1.tar.gz) = 4641089 bytes
+BLAKE2s (tables-3.7.0.tar.gz) = a49638994427991e7285e80cee2746ddf81078fb123ca6291325951b0e41c684
+SHA512 (tables-3.7.0.tar.gz) = eaa368d063b5fad87e6d0f9ab6f02da0b2a3542740a52fe8c2bb58e41121495d07b6d2710ad402a28891294aa61a11238c6a7e2cf2933a1bb11391b79cf4fd13
+Size (tables-3.7.0.tar.gz) = 8227955 bytes