[pkgsrc/trunk]: pkgsrc/biology/samtools biology/samtools: Update to 1.15

[bacon <bacon%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/76553a4d8199
branches:  trunk
changeset: 374785:76553a4d8199
user:      bacon <bacon%pkgsrc.org@localhost>
date:      Sat Feb 26 23:11:43 2022 +0000

description:
biology/samtools: Update to 1.15

Several minor enhancements and bug fixes
Changes: https://github.com/samtools/samtools/tags

diffstat:

 biology/samtools/Makefile               |  4 ++--
 biology/samtools/PLIST                  |  4 +++-
 biology/samtools/distinfo               |  8 ++++----
 biology/samtools/patches/patch-Makefile |  2 +-
 4 files changed, 10 insertions(+), 8 deletions(-)

diffs (60 lines):

diff -r d187b4539f36 -r 76553a4d8199 biology/samtools/Makefile
--- a/biology/samtools/Makefile Sat Feb 26 23:08:56 2022 +0000
+++ b/biology/samtools/Makefile Sat Feb 26 23:11:43 2022 +0000
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.13 2021/12/17 15:10:06 bacon Exp $
+# $NetBSD: Makefile,v 1.14 2022/02/26 23:11:43 bacon Exp $
 
-DISTNAME=      samtools-1.14
+DISTNAME=      samtools-1.15
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=samtools/}
 
diff -r d187b4539f36 -r 76553a4d8199 biology/samtools/PLIST
--- a/biology/samtools/PLIST    Sat Feb 26 23:08:56 2022 +0000
+++ b/biology/samtools/PLIST    Sat Feb 26 23:11:43 2022 +0000
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.4 2021/12/17 15:10:06 bacon Exp $
+@comment $NetBSD: PLIST,v 1.5 2022/02/26 23:11:43 bacon Exp $
 bin/ace2sam
 bin/blast2sam.pl
 bin/bowtie2sam.pl
@@ -28,6 +28,7 @@
 man/man1/samtools-calmd.1
 man/man1/samtools-cat.1
 man/man1/samtools-collate.1
+man/man1/samtools-consensus.1
 man/man1/samtools-coverage.1
 man/man1/samtools-depad.1
 man/man1/samtools-depth.1
@@ -39,6 +40,7 @@
 man/man1/samtools-flags.1
 man/man1/samtools-flagstat.1
 man/man1/samtools-fqidx.1
+man/man1/samtools-head.1
 man/man1/samtools-idxstats.1
 man/man1/samtools-import.1
 man/man1/samtools-index.1
diff -r d187b4539f36 -r 76553a4d8199 biology/samtools/distinfo
--- a/biology/samtools/distinfo Sat Feb 26 23:08:56 2022 +0000
+++ b/biology/samtools/distinfo Sat Feb 26 23:11:43 2022 +0000
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.7 2021/12/17 15:10:06 bacon Exp $
+$NetBSD: distinfo,v 1.8 2022/02/26 23:11:43 bacon Exp $
 
-BLAKE2s (samtools-1.14.tar.gz) = 86b0e03b47d62619507b3b3284ac82689caa962da424c4af03f6690113a2ea50
-SHA512 (samtools-1.14.tar.gz) = fafc256fff8d2725b8a8ff4555cdb14aa0d32eec3a9afc6ff8ab7b474deed48f2a108805cc8f020cc3a28eec0d04034784d1af340bf89eb3c5f6ef3f262ac489
-Size (samtools-1.14.tar.gz) = 4933354 bytes
+BLAKE2s (samtools-1.15.tar.gz) = b37f18ce7134f921f1e8b5ebb087ad88b387934080742f26708bbecf9ddb5df7
+SHA512 (samtools-1.15.tar.gz) = fad213b6d7eb8885b67642ad7235fb35a923238c13fac7fde501f0d8093fa90d49539e895691bc61a94f6d25e8cdfc4e2c4e94ff0ea91ceee248d5140f561cd6
+Size (samtools-1.15.tar.gz) = 4970205 bytes
 SHA1 (patch-Makefile) = 3fc1f1d67167c8ca8eff1ed17f7a084ec3d4579d
diff -r d187b4539f36 -r 76553a4d8199 biology/samtools/patches/patch-Makefile
--- a/biology/samtools/patches/patch-Makefile   Sat Feb 26 23:08:56 2022 +0000
+++ b/biology/samtools/patches/patch-Makefile   Sat Feb 26 23:11:43 2022 +0000
@@ -1,4 +1,4 @@
-$NetBSD: patch-Makefile,v 1.3 2021/12/17 15:10:06 bacon Exp $
+$NetBSD: patch-Makefile,v 1.4 2022/02/26 23:11:43 bacon Exp $
 
 # Respect pkgsrc env