CVS commit: pkgsrc/math/R-spacetime

["Wen Heping" <wen%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   wen
Date:           Thu Jan 24 01:40:58 UTC 2013

Modified Files:
        pkgsrc/math/R-spacetime: Makefile distinfo

Log Message:
Update to 1.0.3

Upstream changes:
2012-12-14 13:39  EdzerPebesma

        * inst/doc/jss816.Rnw, inst/doc/sto.Rnw, inst/doc/stpg.Rnw: updates

2012-11-27 16:57  EdzerPebesma

        * inst/doc/52n_logocl.pdf, inst/doc/jss816.Rnw,
          inst/doc/logo52n.pdf: logo name change

2012-11-27 16:33  EdzerPebesma

        * R/STFDF-methods.R, R/coerce.R, inst/doc/52n_logocl.pdf,
          inst/doc/jss816.Rnw, man/STFDF-class.Rd, man/na.Rd,
          tests/Examples/spacetime-Ex.Rout.save, tests/basic.R,
          tests/basic.Rout.save: as(stfdf, "xts") now exports more than one
          variable;
          added na.* docs
          added 52N logo to vignette

2012-11-24 19:03  EdzerPebesma

        * DESCRIPTION, NAMESPACE, R/Class-xts.R, R/aggregate.R, R/na.R,
          R/stplot.R, demo/gvis.R, inst/doc/sto.Rnw, man/stplot.Rd,
          man/timematch.Rd, tests/Examples/spacetime-Ex.Rout.save: added
          na.locf, na.approx and na.spline functions (na.R, na.Rd);
          added require(zoo) to aggregate method that needs aggregate.zoo,
          so that NAMESPACE is now clean; added zoo to Suggests:
          corrected key.space argument in stplot (mode = 'ts');

2012-11-17 15:54  EdzerPebesma

        * DESCRIPTION, NAMESPACE, R/ST-methods.R, R/aggregate.R,
          R/interval.R, R/over.R, R/stplot.R, R/timematch.R,
          inst/doc/sto.Rnw, man/timematch.Rd,
          tests/Examples/spacetime-Ex.Rout.save, tests/over.R,
          tests/over.Rout.save: timeMatch now is an S4 generic;
          NAMESPACE imports only what is needed, and some repairs for zoo;
          sto.Rnw restored;
          over now always uses interval:interval_overlaps for overlapping
          intervals;
          updated test outputs;
          DESCRIPTION now mentions package intervals

2012-11-13 11:20  EdzerPebesma

        * NAMESPACE: import MATCH.default, to accomodate zoo at CRAN

2012-11-12 18:34  EdzerPebesma

        * NAMESPACE, R/aggregate.R: updates;

2012-11-12 18:18  EdzerPebesma

        * NAMESPACE, R/aggregate.R, R/timematch.R, inst/doc/sto.Rnw,
          man/timematch.Rd, tests/Examples,
          tests/Examples/spacetime-Ex.Rout.save, tests/basic.Rout.save,
          tests/stconstruct.Rout.save: found the MATCH error: zoo needs to
          have S3method("MATCH", "default") in
          its NAMESPACE, along with MATCH import and export in spacetime
          NAMESPACE;
          else (e.g. with zoo 1.7-9 on CRAN) sto.Rnw (aggregate using
          aggregate.zoo)
          will not work without attaching zoo first; so, we now depend on
          zoo's
          development version...

2012-11-12 08:27  EdzerPebesma

        * NAMESPACE, R/ST-methods.R, R/aggregate.R, R/timematch.R,
          inst/doc/sto.Rnw, tests/basic.Rout.save, tests/over.R,
          tests/over.Rout.save, tests/stconstruct.Rout.save, tests/wind.R,
          tests/wind.Rout.save: further NAMESPACE import limitation;
          but aggregate still needs zoo to be attached.

2012-11-11 15:03  EdzerPebesma

        * DESCRIPTION, NAMESPACE, R/aggregate.R, data/air.rda,
          inst/doc/jss816.Rnw, inst/doc/sto.Rnw, man/STSDF-class.Rd,
          man/unstack.Rd, tests/basic.R, tests/basic.Rout.save,
          tests/over.R, tests/over.Rout.save, tests/raster.R,
          tests/raster.Rout.save, tests/stconstruct.R,
          tests/stconstruct.Rout.save, tests/traj.Rout.save, tests/wind.R,
          tests/wind.Rout.save: reorganized zoo and xts to be in Imports:
          rather than Depends:
          (one issue still hangs with zoo needing to be attached before
          sto.Rnw
          can run aggregate.zoo)
          doc files: removed xts() calls when only time steps were passed.

2012-11-10 22:57  EdzerPebesma

        * DESCRIPTION, R/Class-ST.R, R/ST-methods.R, R/STFDF-methods.R,
          R/STIDF-methods.R, R/STSDF-methods.R, R/coerce.R,
          R/stconstruct.R, R/timematch.R: syncronized tzone of endTime with
          that of time; version bump.

2012-11-10 16:12  EdzerPebesma

        * DESCRIPTION, R/STFDF-methods.R, R/STIDF-methods.R,
          R/STSDF-methods.R, data/air.rda, inst/doc/jss816.Rnw,
          man/STLDF-class.Rd, tests/raster.Rout.save, tests/wind.Rout.save:
          added time zone to rural air data;
          time zones in various ST methods (as.xts, selection) got lost,
          now retained;
          updated tests outputs;
          version bump

2012-11-05 13:22  EdzerPebesma

        * man/eof.Rd: limited time steps for example, to reduce run time

2012-11-05 11:43  EdzerPebesma

        * DESCRIPTION, demo/00Index, demo/trip.R, inst/CITATION,
          inst/doc/jss816.Rnw, inst/doc/jss816.bib, man/ST-class.Rd,
          man/STFDF-class.Rd, man/STIDF-class.Rd, man/STLDF-class.Rd,
          man/STSDF-class.Rd, man/STTDF-class.Rd, man/delta.Rd,
          man/over.Rd, man/stconstruct.Rd, man/stplot.Rd, man/timematch.Rd,
          tests/traj.R, tests/traj.Rout.save: update references to JSS
          paper; its publication corresponds to releasing 1.0-0;
          removed trip from Suggests:.

2012-10-29 13:13  BenediktGraeler

        * DESCRIPTION:

2012-10-28 20:10  EdzerPebesma

        * inst/doc/sto.Rnw: updated information on endTime and intervals.

2012-10-28 18:42  EdzerPebesma

        * R/raster.R, R/timematch.R: reverted back setClass();
          alternative way to keep tzone in augment.with.one()

2012-10-27 20:22  EdzerPebesma

        * R/STFDF-methods.R, R/STSDF-methods.R, R/raster.R, R/timematch.R,
          tests/basic.Rout.save, tests/traj.Rout.save: raster: restore
          setClass for RasterStackBrick, if not loaded before;
          ST?DF-methods: missing , in as.data.frame method
          timematch.R: augment.with.one dropped tzone;
          tests: updated for tzone; coerce
          STFDF->STSDF->STIDF->STSDF->STFDF no longer
          identical, as endTime doesn't get set back (further check
          needed?)

2012-10-26 18:46  EdzerPebesma

        * R/STFDF-methods.R, R/STSDF-methods.R, R/timematch.R: two bugs
          caught by Ben Graeler; cosmetic changes to timematch.

2012-10-25 19:41  EdzerPebesma

        * demo/00Index: added gvis to index

2012-10-24 06:50  EdzerPebesma

        * demo/gvis.R: added googleVis demos

2012-10-23 05:59  EdzerPebesma

        * R/raster.R: removed setClass.

2012-10-21 20:33  EdzerPebesma

        * inst/doc/sto.Rnw: updated references

2012-10-21 09:24  EdzerPebesma

        * R/ST-methods.R, R/STIDF-methods.R, R/STSDF-methods.R,
          R/aggregate.R, R/eof.R, R/plot.R, R/stconstruct.R, R/stplot.R:
          EOF: use prcomp.formula so that na.action gets passed;
          default xts slot gets named index column;

2012-10-18 13:15  EdzerPebesma

        * R/stplot.R, man/stplot.Rd: argument mismatch (scales =
          list(draw=FALSE))

2012-10-14 10:53  EdzerPebesma

        * NAMESPACE, R/ST-methods.R, R/coerce.R: dim methods for STT, STx
          cercion.

2012-10-03 14:56  EdzerPebesma

        * R/endtime.R, R/stplot.R, inst/doc/jss816.Rnw: added endTime;
          update to vignette; scales handling in stplot.

2012-09-28 20:48  EdzerPebesma

        * DESCRIPTION, R/stplot.R, man/stplot.Rd: stplot: correct scales
          argument if unprojected;
          DESCRIPTION: dropped removed file.

2012-09-25 21:34  EdzerPebesma

        * DESCRIPTION, R/Class-STLDF.R, R/STLDF-methods.R,
          inst/doc/jss816.Rnw, tests/basic.R, tests/over.R,
          tests/over.Rout.save, tests/traj.R, tests/traj.Rout.save: removed
          STLDF sources; version bump; tried to make tests clean wrt TZ
          differences

2012-09-25 08:20  EdzerPebesma

        * R/STTDF-methods.R: needed for CRAN submission

2012-09-24 19:42  EdzerPebesma

        * R/tgrass.R: dealt with endTime in writing tgrass files

2012-09-23 18:48  EdzerPebesma

        * DESCRIPTION, NAMESPACE, R/Class-ST.R, R/Class-STLDF.R,
          R/ST-methods.R, R/STFDF-methods.R, R/STIDF-methods.R,
          R/STLDF-methods.R, R/STSDF-methods.R, R/STTDF-methods.R,
          R/coerce.R, R/eof.R, R/interval.R, R/over.R, R/plot.R,
          R/raster.R, R/stconstruct.R, R/timematch.R, data/air.rda,
          inst/doc/cls.fig, inst/doc/cls.pdf, inst/doc/jss816.Rnw,
          inst/doc/move.fig, inst/doc/move.pdf, man/ST-class.Rd,
          man/STFDF-class.Rd, man/STIDF-class.Rd, man/STLDF-class.Rd,
          man/STSDF-class.Rd, man/delta.Rd, man/interval.Rd,
          man/stconstruct.Rd, man/timematch.Rd, tests/basic.Rout.save,
          tests/over.R, tests/over.Rout.save, tests/raster.Rout.save,
          tests/stconstruct.Rout.save, tests/traj.Rout.save, tests/wind.R,
          tests/wind.Rout.save: removed STL and STLDF class, added endTime
          as slot to ST, and
          tried to deal with all the consequences of having an endTime for
          each observation. Started integrating the more efficient
          intervals
          matching from package "intervals". Updated vignette and docs.

2012-09-12 18:23  EdzerPebesma

        * DESCRIPTION, R/raster.R, R/tgrass.R: moved tgrass stuff to new
          file

2012-09-12 15:25  EdzerPebesma

        * R/ST-methods.R, R/raster.R, man/tgrass.Rd: minor mods to pass
          check again.

2012-09-12 15:01  EdzerPebesma

        * man/tgrass.Rd: {read,write}.tgrass doc

2012-09-12 14:28  EdzerPebesma

        * R/raster.R: removed the "x" before .tif

2012-09-12 14:12  EdzerPebesma

        * NAMESPACE, R/raster.R: updated {read,write}.tgrass functions

2012-09-11 17:07  EdzerPebesma

        * R/raster.R: typo

2012-09-07 09:22  EdzerPebesma

        * DESCRIPTION, R/Class-ST.R, R/Class-STFDF.R, R/Class-STIDF.R,
          R/Class-STLDF.R, R/Class-STSDF.R, R/Class-STTDF.R,
          R/ST-methods.R, R/STLDF-methods.R, R/raster.R, tests/basic.R,
          tests/basic.Rout.save: class validity now checks that attribute
          names in attributes, space or time are not duplicated.

2012-08-29 06:26  EdzerPebesma

        * R/stconstruct.R: patch from Ben Graeler, dealing with univariate
          time-wide data

2012-08-27 07:10  EdzerPebesma

        * DESCRIPTION, R/aggregate.R, R/over.R, R/timematch.R,
          man/interval.Rd, man/over.Rd, man/timematch.Rd,
          tests/traj.Rout.save: split over.R; added links to manual pages;
          updated Suggests: packages.

2012-08-26 21:07  EdzerPebesma

        * R/over.R, man/interval.Rd, man/timematch.Rd, tests/over.R,
          tests/over.Rout.save: added timeMatch for STL objects - irregular
          time intervals

2012-08-13 15:53  EdzerPebesma

        * R/over.R: simplified (hopefully) the time over function

2012-08-10 11:41  EdzerPebesma

        * DESCRIPTION, R/raster.R, man/stplot.Rd, tests/raster.R,
          tests/raster.Rout.save, tests/traj.Rout.save: added raster
          conversion functions

2012-07-25 13:40  EdzerPebesma

        * inst/doc/jss816.Rnw, inst/doc/jss816.bib, inst/doc/spacetime.Rnw,
          inst/doc/spacetime.bib: name change of vignette.

2012-07-04 16:37  EdzerPebesma

        * inst/doc/spacetime.Rnw, tests/traj.R, tests/traj.Rout.save,
          tests/wind.Rout.save: submission of 0.7-1 to CRAN

2012-07-02 07:58  EdzerPebesma

        * NAMESPACE, R/plot.R, R/stplot.R, inst/doc/move.fig,
          inst/doc/move.pdf, inst/doc/spacetime.Rnw: new submission to JSS

2012-07-01 22:40  EdzerPebesma

        * man/STLDF-class.Rd: man page for STLDF

2012-07-01 22:40  EdzerPebesma

        * inst/doc/move.fig, inst/doc/move.pdf, inst/doc/spacetime.Rnw,
          inst/doc/spacetime.bib, man/STFDF-class.Rd, man/STIDF-class.Rd,
          man/STSDF-class.Rd, man/STTDF-class.Rd, man/stplot.Rd: class
          work; comments from second JSS review

2012-06-19 07:49  EdzerPebesma

        * R/Class-STLDF.R, R/STLDF-methods.R, R/plot.R, inst/doc/cls.fig,
          inst/doc/cls.pdf, inst/doc/spacetime.Rnw, man/STIDF-class.Rd:
          more edits to class diagram

2012-06-19 07:08  EdzerPebesma

        * DESCRIPTION, NAMESPACE, R/Class-STLDF.R, R/ST-methods.R,
          R/STLDF-methods.R, R/STTDF-methods.R, R/plot.R, R/stplot.R,
          inst/doc/cls.fig, inst/doc/cls.pdf, inst/doc/spacetime.Rnw,
          inst/doc/spacetime.bib, man/stplot.Rd, tests/traj.R: added
          STL/STLDF class, and methods; added plot methods

2012-05-31 13:33  EdzerPebesma

        * man/stplot.Rd, tests/traj.Rout.save: dependent package versions
          in test; do.repeat argument in docs

2012-05-31 12:56  EdzerPebesma

        * R/over.R, R/stplot.R: added do.repeat argument to stplot.R

2012-05-29 12:28  EdzerPebesma

        * DESCRIPTION: updated URL field

2012-05-29 10:27  EdzerPebesma

        * DESCRIPTION: version / date increase

2012-05-29 10:24  EdzerPebesma

        * R/stplot.R: cuts argument was not passed to spplot if animate > 0

2012-05-25 13:27  EdzerPebesma

        * inst/doc/spacetime.Rnw: two minor modifications in section 8.

2012-05-25 08:46  EdzerPebesma

        * inst/doc/produc.jpg, inst/doc/produc.png: size reduction of
          bitmap, needed by CRAN

2012-05-24 16:18  EdzerPebesma

        * R/over.R, inst/doc/sto.Rnw: simplifications to timeMatch; better
          explanation of interval-interval match in vignette

2012-05-24 07:17  EdzerPebesma

        * R/interval.R, R/over.R, inst/doc/move.fig, inst/doc/move.pdf,
          inst/doc/spacetime.Rnw, inst/doc/wind.pdf, inst/doc/windts.pdf,
          man/over.Rd, man/timematch.Rd, tests/over.R,
          tests/over.Rout.save: more work getting time intervals work
          properly, and document this.

2012-05-14 21:31  EdzerPebesma

        * NAMESPACE, R/Class-ST.R, R/Class-STTDF.R, R/ST-methods.R,
          R/STFDF-methods.R, R/STIDF-methods.R, R/STSDF-methods.R,
          R/interval.R, inst/doc/cls.fig, inst/doc/cls.pdf,
          inst/doc/spacetime.Rnw, man/ST-class.Rd, man/canmove.Rd,
          man/interval.Rd, tests/basic.Rout.save: got rid of canMove slot,
          and methods.

2012-05-14 19:31  EdzerPebesma

        * DESCRIPTION, NAMESPACE, R/Class-ST.R, R/STFDF-methods.R,
          R/STIDF-methods.R, R/STSDF-methods.R, R/interval.R, data/air.rda,
          inst/doc/cls.fig, inst/doc/cls.pdf, inst/doc/move.fig,
          inst/doc/move.pdf, inst/doc/spacetime.Rnw,
          inst/doc/spacetime.bib, man/ST-class.Rd, man/canmove.Rd,
          man/stplot.Rd, tests/basic.Rout.save, tests/over.Rout.save,
          tests/stconstruct.Rout.save, tests/traj.Rout.save, tests/wind.R,
          tests/wind.Rout.save: added canMove slot to ST; updated class
          figure;
          increased version; re-saved air data;
          added figure and timeIsInterval/canMove to vignette;

2012-05-13 20:49  EdzerPebesma

        * DESCRIPTION, R/Class-ST.R, R/ST-methods.R, R/STFDF-methods.R,
          R/STIDF-methods.R, R/STSDF-methods.R, R/STTDF-methods.R,
          R/coerce.R, R/stplot.R, inst/doc/spacetime.Rnw,
          inst/doc/spacetime.bib: further review from JSS; improved support
          for timeIsInterval.

2012-05-03 15:10  EdzerPebesma

        * DESCRIPTION: updated date
2012-04-23 13:44  EdzerPebesma

        * DESCRIPTION, NAMESPACE, R/Class-ST.R, R/ST-methods.R,
          R/STFDF-methods.R, R/STIDF-methods.R, R/STSDF-methods.R,
          R/coerce.R, R/interval.R, R/stconstruct.R, man/ST-class.Rd,
          man/interval.Rd, man/stconstruct.Rd: added timeIsInterval()
          generic (retrieve, set), which indicates whether time is Interval
          (TRUE) or Instant (FALSE).

2012-04-21 20:47  EdzerPebesma

        * R/over.R: got rid of some double loops.

2012-04-09 17:22  EdzerPebesma

        * DESCRIPTION: version update

2012-04-03 15:53  EdzerPebesma

        * DESCRIPTION, R/STTDF-methods.R, R/coerce.R,
          inst/doc/spacetime.Rnw: moved some ST? coercion functions;
          updated version number; diveMove example change in vignette.


To generate a diff of this commit:
cvs rdiff -u -r1.1.1.1 -r1.2 pkgsrc/math/R-spacetime/Makefile \
    pkgsrc/math/R-spacetime/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.