CVS commit: pkgsrc/geography/py-obspy

To: pkgsrc-changes%NetBSD.org@localhost
Subject: CVS commit: pkgsrc/geography/py-obspy
From: "Wen Heping" <wen%netbsd.org@localhost>
Date: Sun, 7 Aug 2016 10:36:44 +0000

Module Name:    pkgsrc
Committed By:   wen
Date:           Sun Aug  7 10:36:44 UTC 2016

Modified Files:
        pkgsrc/geography/py-obspy: Makefile PLIST distinfo

Log Message:
Update to 1.0.2

Upstream changes:
1.0.2: (doi: 10.5281/zenodo.49636)
 - obspy.core:
   * Added workaround for numpy issue where many FFTs of various lengths fill
     a cache that never gets cleared, effectively creating a memory leak
     (see #1424).
   * Trace.filter and Stream.filter don't work on masked arrays anymore because
     it produced unpredictable results due to the un-initialized data-chunk.
     The uninitialized masked gap is now also initialized to np.nan in case
     of floating point data which and a consistent fill value in case of
     integer data. (see #1363)
 - obspy.clients.fdsn:
   * Fixing issue with location codes potentially resulting in unwanted data
     to be requested. (see #1422)
   * Included low-gain seismometers in default channel filters in
     mass-downloader, also included non-oriented channels by default
     (see #1373).
 - obspy.db:
   * Fixed a bug in obspy-indexer command line script (see #1369,
     command line script was not working, probably since 0.10.0)
 - obspy.imaging:
   * Fixed a bug that leads to pressure/tension color blending when plotting
     semi-transparent DC beachball patches (i.e. with "alpha" not equal to 1,
     see #1464)
   * Fixed a bug when plotting non-DC beachball patches without fill colors
     (i.e. with "nofill=True", see #1464)
   * Fix arbitrary units in waveform section plot's offset axis, making it
     possible to add customizations to the plot afterwards (see #1382, see
     #1383)
 - obspy.io.ascii:
   * Fixed a bug that lead to wrong header information in output files when
     writing non-integer sampling rate data to SLIST or TSPAIR formats
     (see #1447)
- obspy.io.cmtsolution:
   * Make sure newer CMTSOLUTION files can also be read (see #1479).
 - obspy.io.gse2:
   * Fixed a bug that could lead to network code not present in GSE2 output
     (see #1448)
 - obspy.io.mseed:
   * Fixed a bug in obspy-mseed-recordanalyzer (see #1386)
 - obspy.io.nlloc:
   * Use geographic coordinates from the NonLinLoc Hypocenter-Phase file if
     no custom coordinate converter is provided. (see #1390)
   * Fix reading NonLinLoc Hypocenter-Phase files with more than one
     hypocenter in it. (see #1480)
   * Fix reading NonLinLoc Hypocenter-Phase files with unicode characters in
     them. (see #1483)
 - obspy.io.quakeml:
   * Fixed issue with improperly raised warnings when the same file is read
     twice. (#1376)
   * Fix writing empty network/station/channel codes in WaveformStreamID
     objects to QuakeML. (see #1483)
 - obspy.io.sac:
   * Try to set SAC distances (dist, az, baz, gcarc) on read, if "lcalda" is
     true.  If "dist" header is found, distances aren't calculated.
   * SACTrace class returns header values as native Python types instead of
     NumPy types.
   * SACTrace.iqual is no longer accepts enumerated string values, but
     arbitrary integer values. (see #1472)
   * SACTrace.read now replaces non-ASCII and null-termination characters in
     string headers with whitespace unless the "debug_strings=True" flag is
     used. (see #1432)
 - obspy.io.stationxml:
   * Always set the number attribute for poles and zeros. (see #1481)
 - obspy.signal:
   * PPSD.plot(): fix plotting of percentiles, mode and mean and setting
     period limits when using "xaxis_frequency=True" (see #1406, #1416)
   * Work around a bug in SciPy that results in wrong results for bandpass
     filter when using Nyquist frequency (or higher) as high corner of the
     passband (see #1451)
 - obspy.taup:
   * Fixing path for Pn. (see #1392)


To generate a diff of this commit:
cvs rdiff -u -r1.5 -r1.6 pkgsrc/geography/py-obspy/Makefile
cvs rdiff -u -r1.2 -r1.3 pkgsrc/geography/py-obspy/PLIST
cvs rdiff -u -r1.3 -r1.4 pkgsrc/geography/py-obspy/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/geography/py-obspy/Makefile
diff -u pkgsrc/geography/py-obspy/Makefile:1.5 pkgsrc/geography/py-obspy/Makefile:1.6
--- pkgsrc/geography/py-obspy/Makefile:1.5      Sat Jul 16 04:11:55 2016
+++ pkgsrc/geography/py-obspy/Makefile  Sun Aug  7 10:36:43 2016
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.5 2016/07/16 04:11:55 wen Exp $
+# $NetBSD: Makefile,v 1.6 2016/08/07 10:36:43 wen Exp $
 
-DISTNAME=      obspy-1.0.1
+DISTNAME=      obspy-1.0.2
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    geography python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=o/obspy/}

Index: pkgsrc/geography/py-obspy/PLIST
diff -u pkgsrc/geography/py-obspy/PLIST:1.2 pkgsrc/geography/py-obspy/PLIST:1.3
--- pkgsrc/geography/py-obspy/PLIST:1.2 Sat Jul 16 04:11:55 2016
+++ pkgsrc/geography/py-obspy/PLIST     Sun Aug  7 10:36:43 2016
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.2 2016/07/16 04:11:55 wen Exp $
+@comment $NetBSD: PLIST,v 1.3 2016/08/07 10:36:43 wen Exp $
 bin/obspy-dataless2resp
 bin/obspy-dataless2xseed
 bin/obspy-flinn-engdahl
@@ -18,7 +18,6 @@ ${PYSITELIB}/${EGG_FILE}/dependency_link
 ${PYSITELIB}/${EGG_FILE}/entry_points.txt
 ${PYSITELIB}/${EGG_FILE}/namespace_packages.txt
 ${PYSITELIB}/${EGG_FILE}/not-zip-safe
-${PYSITELIB}/${EGG_FILE}/pbr.json
 ${PYSITELIB}/${EGG_FILE}/requires.txt
 ${PYSITELIB}/${EGG_FILE}/top_level.txt
 ${PYSITELIB}/obspy/CONTRIBUTORS.txt
@@ -350,10 +349,12 @@ ${PYSITELIB}/obspy/core/tests/data/Modif
 ${PYSITELIB}/obspy/core/tests/data/TM.SKLT..BHZ_faulty_response.xml
 ${PYSITELIB}/obspy/core/tests/data/XM.05.seed
 ${PYSITELIB}/obspy/core/tests/data/XM.05.xml
+${PYSITELIB}/obspy/core/tests/data/events_longitude_wrap.zmap
 ${PYSITELIB}/obspy/core/tests/data/iris_events.xml
 ${PYSITELIB}/obspy/core/tests/data/neries_events.xml
 ${PYSITELIB}/obspy/core/tests/data/stationxml_BK.CMB.__.LKS.xml
 ${PYSITELIB}/obspy/core/tests/data/stationxml_IU.ANTO.30.LDO.xml
+${PYSITELIB}/obspy/core/tests/data/tarfile_impostor.mseed
 ${PYSITELIB}/obspy/core/tests/data/test.tar
 ${PYSITELIB}/obspy/core/tests/data/test.tar.bz2
 ${PYSITELIB}/obspy/core/tests/data/test.tar.gz
@@ -363,9 +364,11 @@ ${PYSITELIB}/obspy/core/tests/images/bas
 ${PYSITELIB}/obspy/core/tests/images/catalog-basemap1.png
 ${PYSITELIB}/obspy/core/tests/images/catalog-basemap2.png
 ${PYSITELIB}/obspy/core/tests/images/catalog-basemap3.png
+${PYSITELIB}/obspy/core/tests/images/catalog-basemap_long-wrap.png
 ${PYSITELIB}/obspy/core/tests/images/catalog-cartopy1.png
 ${PYSITELIB}/obspy/core/tests/images/catalog-cartopy2.png
 ${PYSITELIB}/obspy/core/tests/images/catalog-cartopy3.png
+${PYSITELIB}/obspy/core/tests/images/catalog-cartopy_long-wrap.png
 ${PYSITELIB}/obspy/core/tests/images/channel_response.png
 ${PYSITELIB}/obspy/core/tests/images/event.png
 ${PYSITELIB}/obspy/core/tests/images/image.png
@@ -618,6 +621,7 @@ ${PYSITELIB}/obspy/imaging/tests/images/
 ${PYSITELIB}/obspy/imaging/tests/images/plot_nomerge.png
 ${PYSITELIB}/obspy/imaging/tests/images/ppsd.png
 ${PYSITELIB}/obspy/imaging/tests/images/ppsd_cumulative.png
+${PYSITELIB}/obspy/imaging/tests/images/ppsd_freq.png
 ${PYSITELIB}/obspy/imaging/tests/images/scan.png
 ${PYSITELIB}/obspy/imaging/tests/images/scan_mult_sampl.png
 ${PYSITELIB}/obspy/imaging/tests/images/scan_times.png
@@ -747,6 +751,7 @@ ${PYSITELIB}/obspy/io/cmtsolution/tests/
 ${PYSITELIB}/obspy/io/cmtsolution/tests/__init__.pyo
 ${PYSITELIB}/obspy/io/cmtsolution/tests/data/CMTSOLUTION
 ${PYSITELIB}/obspy/io/cmtsolution/tests/data/CMTSOLUTION_EXPLOSION
+${PYSITELIB}/obspy/io/cmtsolution/tests/data/CMTSOLUTION_NEW
 ${PYSITELIB}/obspy/io/cmtsolution/tests/data/MULTIPLE_EVENTS
 ${PYSITELIB}/obspy/io/cmtsolution/tests/test_core.py
 ${PYSITELIB}/obspy/io/cmtsolution/tests/test_core.pyc
@@ -843,6 +848,7 @@ ${PYSITELIB}/obspy/io/gse2/tests/data/GR
 ${PYSITELIB}/obspy/io/gse2/tests/data/STA2.testlines
 ${PYSITELIB}/obspy/io/gse2/tests/data/STA2.testlines_out
 ${PYSITELIB}/obspy/io/gse2/tests/data/acc.gse
+${PYSITELIB}/obspy/io/gse2/tests/data/boa___00_07a.gse
 ${PYSITELIB}/obspy/io/gse2/tests/data/broken_head.gse2
 ${PYSITELIB}/obspy/io/gse2/tests/data/loc_RJOB20050831023349.z
 ${PYSITELIB}/obspy/io/gse2/tests/data/loc_RJOB20050831023349.z.wrong_chksum
@@ -1066,8 +1072,11 @@ ${PYSITELIB}/obspy/io/nlloc/tests/data/n
 ${PYSITELIB}/obspy/io/nlloc/tests/data/nlloc.obs
 ${PYSITELIB}/obspy/io/nlloc/tests/data/nlloc.qml
 ${PYSITELIB}/obspy/io/nlloc/tests/data/nlloc.scat
+${PYSITELIB}/obspy/io/nlloc/tests/data/nlloc_custom.hyp
+${PYSITELIB}/obspy/io/nlloc/tests/data/nlloc_custom.qml
 ${PYSITELIB}/obspy/io/nlloc/tests/data/nlloc_scat.npy
 ${PYSITELIB}/obspy/io/nlloc/tests/data/nlloc_scat_converted.npy
+${PYSITELIB}/obspy/io/nlloc/tests/data/vanua.sum.grid0.loc.hyp
 ${PYSITELIB}/obspy/io/nlloc/tests/test_core.py
 ${PYSITELIB}/obspy/io/nlloc/tests/test_core.pyc
 ${PYSITELIB}/obspy/io/nlloc/tests/test_core.pyo
@@ -1167,6 +1176,7 @@ ${PYSITELIB}/obspy/io/sac/tests/data/dis
 ${PYSITELIB}/obspy/io/sac/tests/data/interpolation_test_interpolated_delta_0.003.sac
 ${PYSITELIB}/obspy/io/sac/tests/data/interpolation_test_interpolated_delta_0.077.sac
 ${PYSITELIB}/obspy/io/sac/tests/data/interpolation_test_random_waveform_delta_0.01_npts_50.sac
+${PYSITELIB}/obspy/io/sac/tests/data/non_ascii.sac
 ${PYSITELIB}/obspy/io/sac/tests/data/null_terminated.sac
 ${PYSITELIB}/obspy/io/sac/tests/data/seism-longer.sac
 ${PYSITELIB}/obspy/io/sac/tests/data/seism-shorter.sac

Index: pkgsrc/geography/py-obspy/distinfo
diff -u pkgsrc/geography/py-obspy/distinfo:1.3 pkgsrc/geography/py-obspy/distinfo:1.4
--- pkgsrc/geography/py-obspy/distinfo:1.3      Sat Jul 16 04:11:55 2016
+++ pkgsrc/geography/py-obspy/distinfo  Sun Aug  7 10:36:43 2016
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.3 2016/07/16 04:11:55 wen Exp $
+$NetBSD: distinfo,v 1.4 2016/08/07 10:36:43 wen Exp $
 
-SHA1 (obspy-1.0.1.zip) = 7f27dadc9725f01a10f4f3f4e447f92f61aac0d5
-RMD160 (obspy-1.0.1.zip) = 84d961c24a6445d0438200f3c3bbf8b9614eefbc
-SHA512 (obspy-1.0.1.zip) = 0c530fb33b293aa7647d4adbfc1f3139afbc7d7d761062b077b8ff038bb1cefcad1c668c2d4385f8455feb641b518fa2ad7f54d95066d6e4c412abc7359401d2
-Size (obspy-1.0.1.zip) = 20118442 bytes
+SHA1 (obspy-1.0.2.zip) = 7c43a884c80b90e987d6bd7786fc9092e34272f3
+RMD160 (obspy-1.0.2.zip) = be379d314d9a0fcf05c40c7c99212ee57e646b5a
+SHA512 (obspy-1.0.2.zip) = 372d0a694fa200055efcb99b69f9451a778ee236bd2423d126772e0bf8fd91dc924167c4116f7711a47d687117e4790f89552ec365bc2fd49db75fc54701ef22
+Size (obspy-1.0.2.zip) = 22774079 bytes

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