CVS commit: [pkgsrc-2017Q3] pkgsrc/math/py-numpy

["S.P.Zeidler" <spz%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   spz
Date:           Mon Oct  9 12:23:08 UTC 2017

Modified Files:
        pkgsrc/math/py-numpy [pkgsrc-2017Q3]: Makefile distinfo
        pkgsrc/math/py-numpy/patches [pkgsrc-2017Q3]:
            patch-numpy_distutils_fcompiler_gnu.py

Log Message:
Pullup ticket #5564 - requested by sevan
math/py-numpy: security update

Revisions pulled up:
- math/py-numpy/Makefile                                        1.44
- math/py-numpy/distinfo                                        1.25
- math/py-numpy/patches/patch-numpy_distutils_fcompiler_gnu.py  1.13

-------------------------------------------------------------------
   Module Name:    pkgsrc
   Committed By:   adam
   Date:           Thu Oct  5 08:21:27 UTC 2017

   Modified Files:
           pkgsrc/math/py-numpy: Makefile distinfo
           pkgsrc/math/py-numpy/patches: patch-numpy_distutils_fcompiler_gnu.py

   Log Message:
   py-numpy: update to 1.13.3

   NumPy 1.13.3:
   This is a bugfix release for some problems found since 1.13.1. The most
   important fixes are for CVE-2017-12852 and temporary elision. Users of
   earlier
   versions of 1.13 should upgrade.

   To generate a diff of this commit:
   cvs rdiff -u -r1.43 -r1.44 pkgsrc/math/py-numpy/Makefile
   cvs rdiff -u -r1.24 -r1.25 pkgsrc/math/py-numpy/distinfo
   cvs rdiff -u -r1.12 -r1.13 \
       pkgsrc/math/py-numpy/patches/patch-numpy_distutils_fcompiler_gnu.py


To generate a diff of this commit:
cvs rdiff -u -r1.43 -r1.43.4.1 pkgsrc/math/py-numpy/Makefile
cvs rdiff -u -r1.24 -r1.24.4.1 pkgsrc/math/py-numpy/distinfo
cvs rdiff -u -r1.12 -r1.12.6.1 \
    pkgsrc/math/py-numpy/patches/patch-numpy_distutils_fcompiler_gnu.py

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/py-numpy/Makefile
diff -u pkgsrc/math/py-numpy/Makefile:1.43 pkgsrc/math/py-numpy/Makefile:1.43.4.1
--- pkgsrc/math/py-numpy/Makefile:1.43  Fri Jul  7 04:21:10 2017
+++ pkgsrc/math/py-numpy/Makefile       Mon Oct  9 12:23:07 2017
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.43 2017/07/07 04:21:10 adam Exp $
+# $NetBSD: Makefile,v 1.43.4.1 2017/10/09 12:23:07 spz Exp $
 
-DISTNAME=      numpy-1.13.1
+DISTNAME=      numpy-1.13.3
 GITHUB_PROJECT=        numpy
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    math python

Index: pkgsrc/math/py-numpy/distinfo
diff -u pkgsrc/math/py-numpy/distinfo:1.24 pkgsrc/math/py-numpy/distinfo:1.24.4.1
--- pkgsrc/math/py-numpy/distinfo:1.24  Fri Jul  7 04:21:10 2017
+++ pkgsrc/math/py-numpy/distinfo       Mon Oct  9 12:23:07 2017
@@ -1,10 +1,10 @@
-$NetBSD: distinfo,v 1.24 2017/07/07 04:21:10 adam Exp $
+$NetBSD: distinfo,v 1.24.4.1 2017/10/09 12:23:07 spz Exp $
 
-SHA1 (numpy-1.13.1.tar.gz) = 81a3af2d9b958a8ae40946855fc197901026746e
-RMD160 (numpy-1.13.1.tar.gz) = 96792157187fc7b682a9dae8a40432ab188a77c1
-SHA512 (numpy-1.13.1.tar.gz) = 98102998cd5abafb8c89c98c37cc1ec1228c02f8e6295c4945cb0ecc6a04e32289ed0853b3bac4f7319d3aa7b9bc854e7ad0c1de36435b1d676bad79a74a1ec6
-Size (numpy-1.13.1.tar.gz) = 4336552 bytes
+SHA1 (numpy-1.13.3.tar.gz) = 3638927fd264fd8e90b3894175cb3f15e4d7e3a3
+RMD160 (numpy-1.13.3.tar.gz) = 1fdf1e5137b3c79863834737ff2ecb845590cbe0
+SHA512 (numpy-1.13.3.tar.gz) = 1ff454514528edf9666a7b9e4fd990f3cf10410d3c8d9e395cbd5ba7765d55939406bf15a036de5fe6df833013a29f4db13d2df2081349bd9bd743052fbf2f11
+Size (numpy-1.13.3.tar.gz) = 4339878 bytes
 SHA1 (patch-aa) = c964fa13fb120b1b0f9d0bf5bc713507cd60b945
 SHA1 (patch-ab) = b421455fdbb666c8075d8bffbeb59533434d23e6
 SHA1 (patch-numpy_distutils_fcompiler_g95.py) = be73b64a3e551df998b6a904d6db762bf28a98ed
-SHA1 (patch-numpy_distutils_fcompiler_gnu.py) = 5df9710db0f1cf1265ed57d86521a1627c461daf
+SHA1 (patch-numpy_distutils_fcompiler_gnu.py) = 4b0833d09560ebb954dd53ebc5cdcce339705bac

Index: pkgsrc/math/py-numpy/patches/patch-numpy_distutils_fcompiler_gnu.py
diff -u pkgsrc/math/py-numpy/patches/patch-numpy_distutils_fcompiler_gnu.py:1.12 pkgsrc/math/py-numpy/patches/patch-numpy_distutils_fcompiler_gnu.py:1.12.6.1
--- pkgsrc/math/py-numpy/patches/patch-numpy_distutils_fcompiler_gnu.py:1.12    Thu Jun 15 07:02:53 2017
+++ pkgsrc/math/py-numpy/patches/patch-numpy_distutils_fcompiler_gnu.py Mon Oct  9 12:23:07 2017
@@ -1,4 +1,4 @@
-$NetBSD: patch-numpy_distutils_fcompiler_gnu.py,v 1.12 2017/06/15 07:02:53 adam Exp $
+$NetBSD: patch-numpy_distutils_fcompiler_gnu.py,v 1.12.6.1 2017/10/09 12:23:07 spz Exp $
 
 Linker needs -shared explictly (at least with GCC 4.7 on SunOS), plus
 any ABI flags as appropriate.
@@ -6,7 +6,7 @@ On OS X, do not use '-bundle' and 'dynam
 Do not use -funroll-loops compiler flag.
 Do not run a shell command when it is "None".
 
---- numpy/distutils/fcompiler/gnu.py.orig      2017-06-07 15:26:35.000000000 +0000
+--- numpy/distutils/fcompiler/gnu.py.orig      2017-09-29 20:10:10.000000000 +0000
 +++ numpy/distutils/fcompiler/gnu.py
 @@ -57,8 +57,10 @@ class GnuFCompiler(FCompiler):
                      return ('gfortran', m.group(1))
@@ -18,9 +18,9 @@ Do not run a shell command when it is "N
 +                if m.group(1).split(".") < ["4", "2"]:
 +                    self.g2c = "f95"
                  return ('gfortran', m.group(1))
-             m = re.search(r'GNU Fortran.*?\-?([0-9-.]+)', version_string)
-             if m:
-@@ -87,7 +89,7 @@ class GnuFCompiler(FCompiler):
+             m = re.search(
+                 r'GNU Fortran.*?\-?([0-9-.]+\.[0-9-.]+)', version_string)
+@@ -88,7 +90,7 @@ class GnuFCompiler(FCompiler):
          'compiler_f77' : [None, "-g", "-Wall", "-fno-second-underscore"],
          'compiler_f90' : None,  # Use --fcompiler=gnu95 for f90 codes
          'compiler_fix' : None,
@@ -29,7 +29,7 @@ Do not run a shell command when it is "N
          'archiver'     : ["ar", "-cr"],
          'ranlib'       : ["ranlib"],
          'linker_exe'   : [None, "-g", "-Wall"]
-@@ -139,7 +141,7 @@ class GnuFCompiler(FCompiler):
+@@ -140,7 +142,7 @@ class GnuFCompiler(FCompiler):
                      s = 'Env. variable MACOSX_DEPLOYMENT_TARGET set to 10.3'
                      warnings.warn(s, stacklevel=2)
  
@@ -38,7 +38,7 @@ Do not run a shell command when it is "N
          else:
              opt.append("-shared")
          if sys.platform.startswith('sunos'):
-@@ -215,7 +217,6 @@ class GnuFCompiler(FCompiler):
+@@ -216,7 +218,6 @@ class GnuFCompiler(FCompiler):
              opt = ['-O2']
          else:
              opt = ['-O3']
@@ -46,7 +46,7 @@ Do not run a shell command when it is "N
          return opt
  
      def _c_arch_flags(self):
-@@ -270,7 +271,7 @@ class Gnu95FCompiler(GnuFCompiler):
+@@ -271,7 +272,7 @@ class Gnu95FCompiler(GnuFCompiler):
                            "-fno-second-underscore"] + _EXTRAFLAGS,
          'compiler_fix' : [None, "-Wall",  "-g","-ffixed-form",
                            "-fno-second-underscore"] + _EXTRAFLAGS,
@@ -55,7 +55,7 @@ Do not run a shell command when it is "N
          'archiver'     : ["ar", "-cr"],
          'ranlib'       : ["ranlib"],
          'linker_exe'   : [None, "-Wall"]
-@@ -283,7 +284,7 @@ class Gnu95FCompiler(GnuFCompiler):
+@@ -284,7 +285,7 @@ class Gnu95FCompiler(GnuFCompiler):
  
      def _universal_flags(self, cmd):
          """Return a list of -arch flags for every supported architecture."""