CVS commit: pkgsrc/math/R-tibble

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Sat Jun  5 08:30:24 UTC 2021

Modified Files:
        pkgsrc/math/R-tibble: Makefile distinfo

Log Message:
(math/R-tibble)  Updated 2.1.3 to 3.1.2

# tibble 3.1.2

- Bump required versions of ellipsis and vctrs to avoid warning during package load.

# tibble 3.1.1

- `num()` and `char()` are reexported from pillar (#880).
- `tribble()` and `frame_matrix()` give an error if values are named (#871, @lorenzwalthert).
- Document `cli.num_colors` option (#410).
- Fix `new_tibble()` examples for compatibility with pillar 1.6.0.

# tibble 3.1.0

## Bug fixes

- `has_rownames()` now works correctly for data frames with a `"row.names"` attribute malformed due to a problem in `structure()` (#852).

- `tbl[FALSE, "column"] <- x` adds new column again (#846).

## Features

- Importing pillar 1.5.0, cli and crayon are now suggested packages (#475).

- `size_sum()` is now reexported from pillar (#850, @topepo).

- `as_tibble()` hints more often to use the `.name_repair` argument if column names are invalid (#855).

- `as_tibble.table()` mentions `.name_repair` argument in the error message (#839).

## Internal

- Remove compatibility code for pillar < 1.5.0 (#861).

- Moved most functions to the "stable" lifecycle (#860).

# tibble 3.0.6

- `vec_ptype_abbr.tbl_df()` and `type_sum.tbl_df()` now uses the name of the topmost class for subclasses of `"tbl_df"` (#843).
- Ignore errors in `formats.Rmd` vignette.
- Avoid tidy evaluation in pillar compatibility code.

# tibble 3.0.5

- Use testthat edition 3, compatible with testthat 3.0.1 (#827, #832).

# tibble 3.0.4

## Compatibility

- Establish compatibility with upcoming pillar 1.5.0 (#818).

- `tbl_sum()` shows "data frame" instead of "tibble" for objects inheriting from `"tbl"` but not `"tbl_df"` (#818).

- Register `format.tbl()` and `print.tbl()` methods only if pillar doesn't (#816).

- Use `vctrs::num_as_location()` internally for subset assignment of rows and columns for better error messages (#746).

- Adapt tests to the development version of testthat.

## Bug fixes

- Fix documentation link to `base::Extract`.

- `add_row(df)` adds an empty row again (#809, @DavisVaughan).

# tibble 3.0.3

- Fix test compatibility with rlang 0.4.7.

- Fix warning about `needs_dots` arguments with pillar >= 1.4.5 (#798).

# tibble 3.0.2

## Bug fixes

- `[[` works with classed indexes again, e.g. created with `glue::glue()` (#778).

- `add_column()` works without warning for 0-column data frames (#786).

- `tribble()` now better handles named inputs (#775) and objects of non-vtrs classes like `lubridate::Period` (#784) and `formattable::formattable` (#785).

## Performance

- Subsetting and subassignment are faster (#780, #790, #794).

- `is.null()` is preferred over `is_null()` for speed.

- Implement continuous benchmarking (#793).

## Compatibility

- `is_vector_s3()` is no longer reexported from pillar (#789).

# tibble 3.0.1

## Compatibility fixes

- `[<-.tbl_df()` coerces matrices to data frames (#762).

- Use delayed import for cli to work around unload problems in downstream packages (#754).

## Bug fixes

- More soft-deprecation warnings are actually visible.

- If `.name_repair` is a function, no repair messages are shown (#763).

- Remove superseded signal for `as_tibble.list()`, because `as_tibble_row()` only works for size 1.

## Enhancements

- `as_tibble(validate = )` now always triggers a deprecation warning.

- Subsetting and subassignment of rows with one-column matrices work again, with a deprecation warning (#760).

- Attempts to update a tibble row with an atomic vector give a clearer error message. Recycling message for subassignment appears only if target size is != 1.

- Tweak title of "Invariants" vignette.

# tibble 3.0.0

## Major breaking changes

- Subset assignment ("subassignment") and also subsetting has become stricter. Symptoms:

    - Error: No common type for ...

    - Error: Assigned data `...` must be compatible with ...

    - `i` must have one dimension, not 2

    - Error: Lossy cast from ... to ...

    The "invariants" article at https://tibble.tidyverse.org/dev/articles/invariants.html describes the invariants that the operations follow in tibble, and the most important differences to data 
frames. We tried to make subsetting and subassignment as safe as possible, so that errors are caught early on, while introducing as little friction as possible.

- List classes are no longer automatically treated as vectors. Symptoms:

    - Error: All columns in a tibble must be vectors

    - Error: Expected a vector, not a `...` object

    If you implement a class that wraps a list as S3 vector, you need to include `"list"` in the class:

    ```r
    structure(x, class = c("your_s3_class", "list"))
    ```

    Alternatively, implement a `vec_proxy()` method as described in https://vctrs.r-lib.org/reference/vec_data.html, or construct your class with `list_of()`.

- Added experimental support for inner names for all columns, of the form `tibble(a = c(b = 1))`. Inner names are no longer stripped when creating a tibble. They are maintained for slicing operations 
but not yet updated when assigning with a row subscript. This is a change that may break existing comparison tests that don't expect names in columns (#630). Symptoms:

    - "names for target but not for current" when comparing

## Breaking changes

- `tibble()` now splices anonymous data frames, `tibble(tibble(a = 1), b = a)` is equivalent to `tibble(a = 1, b = a)`. This means that `tibble(iris)` now has five columns, use `tibble(iris = iris)` 
if the intention is to create a packed data frame (#581).

- The `name-repair` help topic is gone, refer to `?vctrs::vec_as_names` instead.

- `expression()` columns are converted to lists as a workaround for lacking support in vctrs (#657).

- `tribble()` is now stricter when combining values. All values in a column must be compatible, otherwise an error occurs (#204). The criteria for wrapping in a list column are now based on vctrs 
principles: non-vectors or vectors with `vctrs::vec_size()` unequal 1 are wrapped in lists.

- `$` warns unconditionally if column not found, `[[` doesn't warn.

- `add_row()` now uses `vctrs::vec_rbind()` under the hood, this means that all columns are combined with `vctrs::vec_c()`. In particular, factor columns will be converted to character if one of the 
columns is a character column.

## Soft deprecations

- Soft-deprecate `subclass` argument to `new_tibble()`.

- Soft-deprecate `as_tibble()` without arguments (#683).

- Preparing to move `glimpse()` and `tbl_sum()` to the pillar package. If your package implements these methods, please import the generics from pillar as soon as they become available there.

## Features

- Internals now make heavy use of the vctrs package, following most of the invariants defined there. Name repair is the responsibility of vctrs now (#464).

- All errors emitted directly by the package inherit from the `"tibble_error"` and `"rlang_error"` classes. In some cases, `"vctrs_error"` errors may be passed through. The exact subclass is subject 
to change.

    Example: `tibble(a = quote(b))` raises an error that inherits from `"tibble_error_column_must_be_vector"`, `"tibble_error"` and `"rlang_error"`, and from `"error"` and `"condition"` like all 
errors. Do not rely on the wording of `"tibble_error_column_must_be_vector"`, this is likely to change.

    Use the following pattern to catch errors emitted by tibble:

    ```r
    tryCatch(
      your_code(),
      tibble_error = function(cnd) {
      }
    )
    ```

- New `tibble_row()` constructs tibbles that have exactly one row, or fails. Non-vector objects are automatically wrapped in a list, vectors (including lists) must have length one (#205).

- New `as_tibble_row()` and `as_tibble_col()` convert a bare vector to a one-row or one-column tibble, respectively. `as_tibble_col()` also works for non-bare vectors. Using `as_tibble()` for bare 
vectors is superseded (#447).

- `as_tibble.data.frame()` uses implicit row names if asked to create a column from row names. This allows lossless direct conversion of matrices with row names to tibbles (#567, @stufield).

- Implement `str.tbl_df()` (#480).

- `tribble()` now returns columns with `"unspecified"` type for 0-row tibbles.

- `add_row()` and `add_column()` now restore attributes to avoid errors when appending to sf objects or other tibble subclasses (#662).

- `add_column()` gains `.name_repair` argument. If not given, `.data` must have unique columns, with a deprecation message.

- Allow `POSIXlt` columns, they are now better supported by dplyr and other tools thanks to vctrs (#626).

- `tibble()` ignores NULL arguments, named or unnamed (#580).

- `view()` works for remote data sources by applying the same strategy as `print()` and `glimpse()`. The maximum number of rows in this case can be specified using the new `n` argument, by default it 
is taken from the new `"tibble.view_max"` option (#695).

## Output

- Formatting dimensions never uses scientific notation.

- `glimpse()` uses "Rows" and "Columns" instead of "Variables" and "Observations", because we're not sure if the data is tidy here (#614).

- `view()` now uses the created (or passed) title argument (#610, @xvrdm).

## Performance

- Construction and subsetting of large data frames is faster now (#717, @romainfrancois).

## Internal

- Import lifecycle package (#669).

- `new_tibble()` removes redundant subclasses from the `"class"` attribute.

- Using classed conditions. All classes start with `"tibble_error_"` and also contain `"tibble_error"` (#659).

- The magrittr pipe `%>%` is reexported.


To generate a diff of this commit:
cvs rdiff -u -r1.4 -r1.5 pkgsrc/math/R-tibble/Makefile
cvs rdiff -u -r1.2 -r1.3 pkgsrc/math/R-tibble/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-tibble/Makefile
diff -u pkgsrc/math/R-tibble/Makefile:1.4 pkgsrc/math/R-tibble/Makefile:1.5
--- pkgsrc/math/R-tibble/Makefile:1.4   Thu Aug  8 19:53:54 2019
+++ pkgsrc/math/R-tibble/Makefile       Sat Jun  5 08:30:23 2021
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.4 2019/08/08 19:53:54 brook Exp $
+# $NetBSD: Makefile,v 1.5 2021/06/05 08:30:23 mef Exp $
 
 R_PKGNAME=     tibble
-R_PKGVER=      2.1.3
-CATEGORIES=    math
+R_PKGVER=      3.1.2
+#ATEGORIES=    math
 
 MAINTAINER=    minskim%NetBSD.org@localhost
 COMMENT=       Simple data frames
@@ -15,6 +15,11 @@ DEPENDS+=    R-pkgconfig>=2.0.2:../../devel
 DEPENDS+=      R-rlang>=0.3.0:../../devel/R-rlang
 DEPENDS+=      R-pillar>=1.3.1:../../misc/R-pillar
 
+#Packages suggested but not available:
+#  'bench', 'bit64', 'blob', 'DiagrammeR', 'dplyr', 'formattable',
+#  'ggplot2', 'hms', 'lubridate', 'mockr', 'nycflights13', 'purrr',
+#  'testthat', 'tidyr'
+
 USE_LANGUAGES= c
 
 .include "../../math/R/Makefile.extension"

Index: pkgsrc/math/R-tibble/distinfo
diff -u pkgsrc/math/R-tibble/distinfo:1.2 pkgsrc/math/R-tibble/distinfo:1.3
--- pkgsrc/math/R-tibble/distinfo:1.2   Wed Jul 31 20:35:18 2019
+++ pkgsrc/math/R-tibble/distinfo       Sat Jun  5 08:30:23 2021
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.2 2019/07/31 20:35:18 brook Exp $
+$NetBSD: distinfo,v 1.3 2021/06/05 08:30:23 mef Exp $
 
-SHA1 (R/tibble_2.1.3.tar.gz) = 0435e40c7d0eb91574023ff272b43d7685304a32
-RMD160 (R/tibble_2.1.3.tar.gz) = a9457f470c90290c2975d12653a5ed9ca4f82386
-SHA512 (R/tibble_2.1.3.tar.gz) = 1401712ca97a6988c53d8c4f0f5f47d3392404e1538cb0782822789c7f3bc7965444b3cd161c9eb64ece0732b81e9164b076de2089ea6548c63467ca159ecd75
-Size (R/tibble_2.1.3.tar.gz) = 310774 bytes
+SHA1 (R/tibble_3.1.2.tar.gz) = f075b899eedd96b4e27770eb37391c6350227bf3
+RMD160 (R/tibble_3.1.2.tar.gz) = 363bf58e1729dcdec8ba4a77de508f339bbcbcd5
+SHA512 (R/tibble_3.1.2.tar.gz) = e0c6bfd360b9b7fef77c6bf1f41c99dedff8a2cfb6e08c4084a4ecf5612e2144713070634d08f111c39ec3274fa692713444f673c0413a74128396dc074dda74
+Size (R/tibble_3.1.2.tar.gz) = 686145 bytes