CVS commit: pkgsrc/math/R-robustbase

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Mon Sep 20 00:10:53 UTC 2021

Modified Files:
        pkgsrc/math/R-robustbase: Makefile distinfo

Log Message:
(math/R-robustbase) Updated 0.93.5 to 0.93.8

(R CMD Rdconv -t txt math/R-robustbase/work/robustbase/inst/NEWS.Rd)
CHANGES in robustbase VERSION 0.93-8 (2021-06-01, svn r879):

  NEW FEATURES:

         * 'scaleTau2()' gets new optional 'iter = 1' and 'tol.iter'
           arguments; mostly experimentally to see if or when iteration
           makes sense.

         * 'Qn(x, *)' gets new optional 'k = .' to indicate the
           "quantile" i.e., order statistic to be computed (with
           default as previously hard-coded).
           Experimentally to try for cases where more than n/2
           observations coincide (with the median), i.e., 'x[i] == x0
           == median(x[])', and hence 'Qn(x)' and 'mad(x)' are zero.

         * 'adjOutlyingness()' gets new option 'IQRtype = 7'.

  Tweaks:

         * For tests: *again* differences found in the non-sensical
           'adjOutlyingness()' example (with large p/n, hence many
           "random" values in the order of 1e15).  Disable the test for
           now (and record the result in *.Rout).

  BUG FIXES:

         * The 'test()' utility in 'tests/lmrob-ex12.R' no longer calls
           'matrix(x, n,4)' where the length of x does not match '4n'.
           Similar change in 'tests/mc-strict.R'

CHANGES in robustbase VERSION 0.93-7 (2021-01-03, svn r865):

  NEW FEATURES:

         * Use '\CRANpkg{.}' in most places, providing web links to the
           respective CRAN package page.

         * 'adjOutlyingness()' now gains optional parameters to be
           passed to 'mc()'.

  BUG FIXES:

         * update the internal man page, so new 'checkRdContents()' is
           happy.

         * fix several '\url{.}''s that now are diagnosed as 'moved'.

         * 'adjOutlyingness()' finally works with 'p.samp > p'.

         * 'scaleTau2()' now works with 'Inf' and very large values,
           and obeys new 'na.rm = FALSE' argument.

         * add 'check.environment=FALSE' to some of the 'all.equal()'
           calls (for 'R-devel', i.e., future R 4.1.x).

         * 'wgt.himedian(numeric())' now returns 'NA' instead of
           occasionally seg.faulting or inf.looping.  Ditto for a case
           when called from 'Qn()'.

CHANGES in robustbase VERSION 0.93-6 (2020-03-20, svn r854):

  NEW FEATURES:

         * 'splitFrame()' now treats 'character' columns also as
           categorical (the same as 'factor's).

  Tweaks:

         * Small updates, also in checks for newer compiler settings,
           e.g., 'FCLEN' macro; also F77_*() etc, in order to fix 'LTO'
           issues.

         * More careful or _less_ calling 'intpr()': correct "Rank" of
           array (for gfortran/gcc 10, when '-fallow-argument-mismatch'
           is not set).


To generate a diff of this commit:
cvs rdiff -u -r1.1 -r1.2 pkgsrc/math/R-robustbase/Makefile \
    pkgsrc/math/R-robustbase/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-robustbase/Makefile
diff -u pkgsrc/math/R-robustbase/Makefile:1.1 pkgsrc/math/R-robustbase/Makefile:1.2
--- pkgsrc/math/R-robustbase/Makefile:1.1       Fri Aug  9 15:48:20 2019
+++ pkgsrc/math/R-robustbase/Makefile   Mon Sep 20 00:10:53 2021
@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.1 2019/08/09 15:48:20 brook Exp $
+# $NetBSD: Makefile,v 1.2 2021/09/20 00:10:53 mef Exp $
 
 R_PKGNAME=     robustbase
-R_PKGVER=      0.93-5
-CATEGORIES=    math
+R_PKGVER=      0.93-8
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
 COMMENT=       Basic robust statistics
@@ -10,8 +9,17 @@ LICENSE=      gnu-gpl-v2 OR gnu-gpl-v3
 
 DEPENDS+=      R-DEoptimR>=1.0.8:../../math/R-DEoptimR
 
+# Packages suggested but not available:
+#   'robust', 'fit.models', 'MPV', 'GGally',
+#   'RColorBrewer', 'reshape2', 'sfsmisc', 'catdata', 'doParallel',
+#   'foreach', 'skewt'
+TEST_DEPENDS+= R-ggplot2-[0-9]*:../../graphics/R-ggplot2
+TEST_DEPENDS+= R-xtable-[0-9]*:../../math/R-xtable
+
+# Packages which this enhances but not available for checking:
+#   'robustX', 'rrcov', 'matrixStats', 'quantreg', 'Hmisc'
+
 USE_LANGUAGES= c fortran
 
 .include "../../math/R/Makefile.extension"
 .include "../../mk/bsd.pkg.mk"
-
Index: pkgsrc/math/R-robustbase/distinfo
diff -u pkgsrc/math/R-robustbase/distinfo:1.1 pkgsrc/math/R-robustbase/distinfo:1.2
--- pkgsrc/math/R-robustbase/distinfo:1.1       Fri Aug  9 15:48:20 2019
+++ pkgsrc/math/R-robustbase/distinfo   Mon Sep 20 00:10:53 2021
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.1 2019/08/09 15:48:20 brook Exp $
+$NetBSD: distinfo,v 1.2 2021/09/20 00:10:53 mef Exp $
 
-SHA1 (R/robustbase_0.93-5.tar.gz) = 62d3ce4e616c3a3692312ba2f2d4ecfd8b519baf
-RMD160 (R/robustbase_0.93-5.tar.gz) = ab243bdd7d93ea803d6e275309009008241a7457
-SHA512 (R/robustbase_0.93-5.tar.gz) = 81ae41c0f0009c77ab26d2f0b82414ae2f730acece2eb79da18ac676c1b506d078586fc0502579f092698fba858cf44578293583d7b074e07131952b333ea7aa
-Size (R/robustbase_0.93-5.tar.gz) = 2957246 bytes
+SHA1 (R/robustbase_0.93-8.tar.gz) = b3bc3960fd5d3d80042660fb9cdd9031f4234328
+RMD160 (R/robustbase_0.93-8.tar.gz) = df7a77c04bd21636b5015eff7f4a1cb649529f7e
+SHA512 (R/robustbase_0.93-8.tar.gz) = 1e6d2f7dd90bd9b095953f80bd59a008b410f13c05641e67ea43ee85ebfd5dc4d6c7908e0a3426cd6cee7e8f13ab1ed71443abe153988dac08de927369818181
+Size (R/robustbase_0.93-8.tar.gz) = 2334489 bytes