CVS commit: pkgsrc/math/py-scipy

["Adam Ciarcinski" <adam%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   adam
Date:           Tue Nov 30 17:00:44 UTC 2021

Modified Files:
        pkgsrc/math/py-scipy: Makefile PLIST distinfo

Log Message:
py-scipy: updated to 1.7.3

SciPy 1.7.3 is a bug-fix release that provides binary wheels
for MacOS arm64 with Python 3.8, 3.9, and 3.10. The MacOS arm64 wheels
are only available for MacOS version 12.0 and greater, as explained
in Issue 14688, linked below.

Issues closed for 1.7.3
-----------------------
* Segmentation fault on import of scipy.integrate on Apple M1 ARM...
* BUG: ARPACK's eigsh & OpenBLAS from Apple Silicon M1 (arm64)...
* four CI failures on pre-release job
* Remaining test failures for macOS arm64 wheel
* BUG: Segmentation fault caused by scipy.stats.qmc.qmc.update_discrepancy

Pull requests for 1.7.3
-----------------------
* BLD: update pyproject.toml for Python 3.10 changes
* BUG: out of bounds indexing in stats.qmc.update_discrepancy
* MAINT: skip a few failing tests in \`1.7.x\` for macOS arm64


To generate a diff of this commit:
cvs rdiff -u -r1.51 -r1.52 pkgsrc/math/py-scipy/Makefile
cvs rdiff -u -r1.20 -r1.21 pkgsrc/math/py-scipy/PLIST
cvs rdiff -u -r1.28 -r1.29 pkgsrc/math/py-scipy/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/py-scipy/Makefile
diff -u pkgsrc/math/py-scipy/Makefile:1.51 pkgsrc/math/py-scipy/Makefile:1.52
--- pkgsrc/math/py-scipy/Makefile:1.51  Sat Nov  6 11:53:13 2021
+++ pkgsrc/math/py-scipy/Makefile       Tue Nov 30 17:00:44 2021
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.51 2021/11/06 11:53:13 adam Exp $
+# $NetBSD: Makefile,v 1.52 2021/11/30 17:00:44 adam Exp $
 
-DISTNAME=      scipy-1.7.2
+DISTNAME=      scipy-1.7.3
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=s/scipy/}
@@ -62,6 +62,7 @@ do-test:
        cd ${WRKDIR} && \
        ${PYTHONBIN} -c "import scipy; scipy.test('full')"
 
+BUILDLINK_API_DEPENDS.boost-headers+=  boost-headers>=1.77.0nb1
 .include "../../devel/boost-headers/buildlink3.mk"
 .include "../../devel/py-cython/buildlink3.mk"
 .include "../../devel/py-pybind11/buildlink3.mk"

Index: pkgsrc/math/py-scipy/PLIST
diff -u pkgsrc/math/py-scipy/PLIST:1.20 pkgsrc/math/py-scipy/PLIST:1.21
--- pkgsrc/math/py-scipy/PLIST:1.20     Sat Nov  6 11:53:13 2021
+++ pkgsrc/math/py-scipy/PLIST  Tue Nov 30 17:00:44 2021
@@ -1,10 +1,10 @@
-@comment $NetBSD: PLIST,v 1.20 2021/11/06 11:53:13 adam Exp $
+@comment $NetBSD: PLIST,v 1.21 2021/11/30 17:00:44 adam Exp $
 ${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
 ${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
 ${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
+${PYSITELIB}/${EGG_INFODIR}/not-zip-safe
 ${PYSITELIB}/${EGG_INFODIR}/requires.txt
 ${PYSITELIB}/${EGG_INFODIR}/top_level.txt
-${PYSITELIB}/${EGG_INFODIR}/not-zip-safe
 ${PYSITELIB}/scipy/HACKING.rst.txt
 ${PYSITELIB}/scipy/INSTALL.rst.txt
 ${PYSITELIB}/scipy/LICENSE.txt
@@ -1733,6 +1733,15 @@ ${PYSITELIB}/scipy/stats/_binned_statist
 ${PYSITELIB}/scipy/stats/_binomtest.py
 ${PYSITELIB}/scipy/stats/_binomtest.pyc
 ${PYSITELIB}/scipy/stats/_binomtest.pyo
+${PYSITELIB}/scipy/stats/_boost/__init__.py
+${PYSITELIB}/scipy/stats/_boost/__init__.pyc
+${PYSITELIB}/scipy/stats/_boost/__init__.pyo
+${PYSITELIB}/scipy/stats/_boost/beta_ufunc.so
+${PYSITELIB}/scipy/stats/_boost/binom_ufunc.so
+${PYSITELIB}/scipy/stats/_boost/nbinom_ufunc.so
+${PYSITELIB}/scipy/stats/_boost/setup.py
+${PYSITELIB}/scipy/stats/_boost/setup.pyc
+${PYSITELIB}/scipy/stats/_boost/setup.pyo
 ${PYSITELIB}/scipy/stats/_bootstrap.py
 ${PYSITELIB}/scipy/stats/_bootstrap.pyc
 ${PYSITELIB}/scipy/stats/_bootstrap.pyo

Index: pkgsrc/math/py-scipy/distinfo
diff -u pkgsrc/math/py-scipy/distinfo:1.28 pkgsrc/math/py-scipy/distinfo:1.29
--- pkgsrc/math/py-scipy/distinfo:1.28  Sat Nov  6 11:53:13 2021
+++ pkgsrc/math/py-scipy/distinfo       Tue Nov 30 17:00:44 2021
@@ -1,7 +1,6 @@
-$NetBSD: distinfo,v 1.28 2021/11/06 11:53:13 adam Exp $
+$NetBSD: distinfo,v 1.29 2021/11/30 17:00:44 adam Exp $
 
-BLAKE2s (scipy-1.7.2.tar.gz) = 7cd72804f51104082d305e80d8c4e95b67708268cb50c28e0b09daefe6740829
-SHA512 (scipy-1.7.2.tar.gz) = 87596430571ff2a43f067eaaf3254c0841dac82b9152cb64040f1a4d9bc5429aebc31c619ce55d74727f2a79567dfef4acbc6252c24c46d3c8849f97e6e8cfef
-Size (scipy-1.7.2.tar.gz) = 36104529 bytes
+BLAKE2s (scipy-1.7.3.tar.gz) = e3c2e0d6d9543b14e965c6e545b163acd3f698a2adf9c7acc31fac8f866bed13
+SHA512 (scipy-1.7.3.tar.gz) = 83fe00cf708a13a08d28af7022ec645d8976c177f2fefb56e0a47bfcbec726330b973d1f44364e23c939ae708e239a05904346f515ea1a37e8b70ad160b81cee
+Size (scipy-1.7.3.tar.gz) = 36102562 bytes
 SHA1 (patch-scipy_special___round.h) = bc05a935e6423ce8395450ad3b30e88826939422
-SHA1 (patch-scipy_stats_setup.py) = 23ecc1c0f709051920c3761a78d9edb75092ac79