CVS commit: pkgsrc/biology/bcftools

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Fri Dec 17 15:14:36 UTC 2021

Modified Files:
        pkgsrc/biology/bcftools: Makefile PLIST distinfo
        pkgsrc/biology/bcftools/patches: patch-Makefile

Log Message:
biology/bcftools: Update to 1.14

Numerous fixes and enhancments since 1.12

Changes: https://github.com/samtools/bcftools/tags


To generate a diff of this commit:
cvs rdiff -u -r1.11 -r1.12 pkgsrc/biology/bcftools/Makefile
cvs rdiff -u -r1.3 -r1.4 pkgsrc/biology/bcftools/PLIST
cvs rdiff -u -r1.5 -r1.6 pkgsrc/biology/bcftools/distinfo
cvs rdiff -u -r1.2 -r1.3 pkgsrc/biology/bcftools/patches/patch-Makefile

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/bcftools/Makefile
diff -u pkgsrc/biology/bcftools/Makefile:1.11 pkgsrc/biology/bcftools/Makefile:1.12
--- pkgsrc/biology/bcftools/Makefile:1.11       Mon May 24 19:49:10 2021
+++ pkgsrc/biology/bcftools/Makefile    Fri Dec 17 15:14:35 2021
@@ -1,7 +1,6 @@
-# $NetBSD: Makefile,v 1.11 2021/05/24 19:49:10 wiz Exp $
+# $NetBSD: Makefile,v 1.12 2021/12/17 15:14:35 bacon Exp $
 
-DISTNAME=      bcftools-1.12
-PKGREVISION=   1
+DISTNAME=      bcftools-1.14
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=samtools/}
 
@@ -49,7 +48,6 @@ post-install:
        ${MV} ${DESTDIR}${PREFIX}/bin/vcfutils.pl \
                ${DESTDIR}${PREFIX}/bin/vcfutils
 
-BUILDLINK_API_DEPENDS.htslib+= htslib>=1.10.2
 .include "../../biology/htslib/buildlink3.mk"
 .include "../../devel/zlib/buildlink3.mk"
 .include "../../lang/python/application.mk"

Index: pkgsrc/biology/bcftools/PLIST
diff -u pkgsrc/biology/bcftools/PLIST:1.3 pkgsrc/biology/bcftools/PLIST:1.4
--- pkgsrc/biology/bcftools/PLIST:1.3   Sat Mar 20 18:17:07 2021
+++ pkgsrc/biology/bcftools/PLIST       Fri Dec 17 15:14:35 2021
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.3 2021/03/20 18:17:07 bacon Exp $
+@comment $NetBSD: PLIST,v 1.4 2021/12/17 15:14:35 bacon Exp $
 bin/bcftools
 bin/color-chrs
 bin/gff2gff.py

Index: pkgsrc/biology/bcftools/distinfo
diff -u pkgsrc/biology/bcftools/distinfo:1.5 pkgsrc/biology/bcftools/distinfo:1.6
--- pkgsrc/biology/bcftools/distinfo:1.5        Tue Oct 26 10:03:36 2021
+++ pkgsrc/biology/bcftools/distinfo    Fri Dec 17 15:14:35 2021
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.5 2021/10/26 10:03:36 nia Exp $
+$NetBSD: distinfo,v 1.6 2021/12/17 15:14:35 bacon Exp $
 
-BLAKE2s (bcftools-1.12.tar.gz) = 72e0ab50861e7394723dece1e711f5a9ddd134096b8f7526b0007a31a8091329
-SHA512 (bcftools-1.12.tar.gz) = f43074989a01cf4ef32a968935f5e5f3eacf2c04b9aa558d739166e3d96d3a498965d27db6482b2992b5d60fed3d2945ef3fd61fcc79b5dbe062994d49df4ad2
-Size (bcftools-1.12.tar.gz) = 3048508 bytes
+BLAKE2s (bcftools-1.14.tar.gz) = e713f23cf7f125a1ebc5ba21014ddeeb1ae7df6fcd2f2a0c5f8b000861bbf0f9
+SHA512 (bcftools-1.14.tar.gz) = eef01bce76858a5c1a5f5988e23325175dbf30801a4a9cfab05b21c0b972849f9691c540a030e92eaa42b14ce9c487079e0391b1526ae4f7e9707d59a90d4644
+Size (bcftools-1.14.tar.gz) = 3326994 bytes
 SHA1 (patch-Makefile) = 9dfe7b5dcf77deac6d248d7612440780ec8a3731

Index: pkgsrc/biology/bcftools/patches/patch-Makefile
diff -u pkgsrc/biology/bcftools/patches/patch-Makefile:1.2 pkgsrc/biology/bcftools/patches/patch-Makefile:1.3
--- pkgsrc/biology/bcftools/patches/patch-Makefile:1.2  Sat Mar 20 18:17:07 2021
+++ pkgsrc/biology/bcftools/patches/patch-Makefile      Fri Dec 17 15:14:35 2021
@@ -1,4 +1,4 @@
-$NetBSD: patch-Makefile,v 1.2 2021/03/20 18:17:07 bacon Exp $
+$NetBSD: patch-Makefile,v 1.3 2021/12/17 15:14:35 bacon Exp $
 
 # Respect pkgsrc env