CVS commit: pkgsrc/biology/biolibc-tools

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Tue Mar 15 21:10:59 UTC 2022

Modified Files:
        pkgsrc/biology/biolibc-tools: Makefile PLIST distinfo

Log Message:
biology/biolibc-tools: Update to 0.1.2

New fastx-stats and ensembl2gene subcommands
Minor updates for biolibc 0.2.2 API changes
Minor bug fixes and ennancements


To generate a diff of this commit:
cvs rdiff -u -r1.2 -r1.3 pkgsrc/biology/biolibc-tools/Makefile \
    pkgsrc/biology/biolibc-tools/PLIST
cvs rdiff -u -r1.4 -r1.5 pkgsrc/biology/biolibc-tools/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/biolibc-tools/Makefile
diff -u pkgsrc/biology/biolibc-tools/Makefile:1.2 pkgsrc/biology/biolibc-tools/Makefile:1.3
--- pkgsrc/biology/biolibc-tools/Makefile:1.2   Tue Dec 14 19:05:39 2021
+++ pkgsrc/biology/biolibc-tools/Makefile       Tue Mar 15 21:10:59 2022
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.2 2021/12/14 19:05:39 bacon Exp $
+# $NetBSD: Makefile,v 1.3 2022/03/15 21:10:59 bacon Exp $
 
-DISTNAME=      biolibc-tools-0.1.1
+DISTNAME=      biolibc-tools-0.1.2
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
 
Index: pkgsrc/biology/biolibc-tools/PLIST
diff -u pkgsrc/biology/biolibc-tools/PLIST:1.2 pkgsrc/biology/biolibc-tools/PLIST:1.3
--- pkgsrc/biology/biolibc-tools/PLIST:1.2      Tue Dec 14 19:05:39 2021
+++ pkgsrc/biology/biolibc-tools/PLIST  Tue Mar 15 21:10:59 2022
@@ -1,20 +1,24 @@
-@comment $NetBSD: PLIST,v 1.2 2021/12/14 19:05:39 bacon Exp $
+@comment $NetBSD: PLIST,v 1.3 2022/03/15 21:10:59 bacon Exp $
 bin/blt
 libexec/biolibc-tools/chrom-lens
+libexec/biolibc-tools/ensemblid2gene
 libexec/biolibc-tools/extract-seq
 libexec/biolibc-tools/fasta2seq
 libexec/biolibc-tools/fastq-derep.sh
 libexec/biolibc-tools/fastx-derep
+libexec/biolibc-tools/fastx-stats
 libexec/biolibc-tools/fastx2tsv
 libexec/biolibc-tools/find-orfs
 libexec/biolibc-tools/gff2bed
 libexec/biolibc-tools/uniq-seqs.awk
 libexec/biolibc-tools/vcf-search
 man/man1/blt-chrom-lens.1
+man/man1/blt-ensemblid2gene.1
 man/man1/blt-extract-seq.1
 man/man1/blt-fasta2seq.1
 man/man1/blt-fastq-derep.sh.1
 man/man1/blt-fastx-derep.1
+man/man1/blt-fastx-stats.1
 man/man1/blt-fastx2tsv.1
 man/man1/blt-find-orfs.1
 man/man1/blt-gff2bed.1

Index: pkgsrc/biology/biolibc-tools/distinfo
diff -u pkgsrc/biology/biolibc-tools/distinfo:1.4 pkgsrc/biology/biolibc-tools/distinfo:1.5
--- pkgsrc/biology/biolibc-tools/distinfo:1.4   Tue Dec 14 19:05:39 2021
+++ pkgsrc/biology/biolibc-tools/distinfo       Tue Mar 15 21:10:59 2022
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.4 2021/12/14 19:05:39 bacon Exp $
+$NetBSD: distinfo,v 1.5 2022/03/15 21:10:59 bacon Exp $
 
-BLAKE2s (biolibc-tools-0.1.1.tar.gz) = 9b8d4999c641b0b5aaaef88102d59b4972b5f1a6b6782546e274128c57f19c98
-SHA512 (biolibc-tools-0.1.1.tar.gz) = cfd2e7bacef0093a87c28dd4fbab8ee7007e874ee638816c75f6df92dd436d13a1fb6d5faa8e97491711bece19b8bf7d3f5ed0301c732d6c86f4255872884ff6
-Size (biolibc-tools-0.1.1.tar.gz) = 21700 bytes
+BLAKE2s (biolibc-tools-0.1.2.tar.gz) = a97bd90a51e11c136d78a403d34be4588a2364844c8ae1f2d8daa68db175d116
+SHA512 (biolibc-tools-0.1.2.tar.gz) = c6d0686e6a2be32f35c84d97bf489cd2a7a08416caa11b1defdb818a9aaed4e6c6db0482206bb31cfa1edf7d99f972d4990369aed38833515efde9bf89bbbd27
+Size (biolibc-tools-0.1.2.tar.gz) = 24610 bytes