CVS commit: pkgsrc/graphics/R-effects

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Sat May 21 15:33:52 UTC 2022

Modified Files:
        pkgsrc/graphics/R-effects: Makefile distinfo

Log Message:
(graphics/R-effects) Updated 4.1.1 to 4.2.1

Version 4.2-1

 o Allow the vcov. argument in the call to one of the effect methods
 to be a matrix or a function.  Previously only a function was
 permitted.

 o Fixed bug in plot.eff() for multiline plots in which the x.var
 argument is set explicitly (reported by Gerrit Eichner).

 o Small improvements to docs.

Version 4.2-0

 o Adding the use of the insight package to get formulas.

 o Added Effect.glmmPQL() for fitting generalized linear mixed models
 using the glmmPQL() function in the MASS package for penalized
 quasi-likelihood estimation.

 o Don't ignore lines lty sub-argument to plot.effpoly() (fixing a bug
 reported by Laura Adamovicz).

 o One-column matrix predictors trigger a warning and correction
 (following problem reported by Carla Hendricks).

 o Added regression tests for classes of model objects
 supported. Tests must be enabled in the effects sources at
 tests/regression-tests.R.

 o Rewrite of defining effect method vignette.

 o Minor changes to predictor effects gallery vignette.

Version 4.1-4

 o Change class(x) == "y" to inherits(x, "y") in code.

Version 4.1-3

 o Handle xlevels=n argument correctly in Effect() (fixing bug
 reported by Gerrit Eichner).

 o Add col argument to effectsTheme(), mostly to accommodate
 colorblind-friendly palette (suggestion of Sercan Kahveci).

Version 4.1-2

 o Effect methods for clm, clm2, and clmm models were not correctly
 passing the estimated theshholds to polr for computing effects (error
 reported by Stefan Th. Gries).

 o Updated "Defining Effects Methods ..." vignette to reflect
 revisions to Effect.clm, Effect.clm2 and Effect.clmm.

 o Make sure that Effect() and plot() methods work correctly with
 character and logical predictors (following bug report by Julian
 Gaviria Lopez).


To generate a diff of this commit:
cvs rdiff -u -r1.2 -r1.3 pkgsrc/graphics/R-effects/Makefile
cvs rdiff -u -r1.3 -r1.4 pkgsrc/graphics/R-effects/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/graphics/R-effects/Makefile
diff -u pkgsrc/graphics/R-effects/Makefile:1.2 pkgsrc/graphics/R-effects/Makefile:1.3
--- pkgsrc/graphics/R-effects/Makefile:1.2      Thu Aug  8 19:53:42 2019
+++ pkgsrc/graphics/R-effects/Makefile  Sat May 21 15:33:51 2022
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.2 2019/08/08 19:53:42 brook Exp $
+# $NetBSD: Makefile,v 1.3 2022/05/21 15:33:51 mef Exp $
 
 R_PKGNAME=     effects
-R_PKGVER=      4.1-1
+R_PKGVER=      4.2-1
 CATEGORIES=    graphics
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
@@ -11,9 +11,14 @@ LICENSE=     gnu-gpl-v2 OR gnu-gpl-v3
 DEPENDS+=      R-colorspace>=1.4.1:../../graphics/R-colorspace
 DEPENDS+=      R-carData>=3.0.2:../../math/R-carData
 DEPENDS+=      R-estimability>=1.3:../../math/R-estimability
+DEPENDS+=      R-insight-[0-9]*:../../math/R-insight
 DEPENDS+=      R-lme4>=1.1.21:../../math/R-lme4
 DEPENDS+=      R-survey>=3.36:../../math/R-survey
 
+# Packages suggested but not available:
+#   'pbkrtest', 'poLCA', 'heplots', 'ordinal', 'car', 'knitr', 'betareg',
+#   'alr4', 'robustlmm'
+
 USE_LANGUAGES= # none
 
 .include "../../math/R/Makefile.extension"

Index: pkgsrc/graphics/R-effects/distinfo
diff -u pkgsrc/graphics/R-effects/distinfo:1.3 pkgsrc/graphics/R-effects/distinfo:1.4
--- pkgsrc/graphics/R-effects/distinfo:1.3      Tue Oct 26 10:45:55 2021
+++ pkgsrc/graphics/R-effects/distinfo  Sat May 21 15:33:51 2022
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.3 2021/10/26 10:45:55 nia Exp $
+$NetBSD: distinfo,v 1.4 2022/05/21 15:33:51 mef Exp $
 
-BLAKE2s (R/effects_4.1-1.tar.gz) = 3e45bb64a17bd7a7caa164850bbea81db7943d5f015641faa341ef8a043050d9
-SHA512 (R/effects_4.1-1.tar.gz) = 7720315eb1afa8f5f3a19e69a62f22ea7241be1ee9ce843eaf37750e80939acc32e3301759b47b8abbb2ece08fd8da9cc9b5f9a217dde3200122ee86ad4b1014
-Size (R/effects_4.1-1.tar.gz) = 2606577 bytes
+BLAKE2s (R/effects_4.2-1.tar.gz) = aa0591fced2bf740987a2bdc3fd466c73bf9e3215a94ae128be570e5e1a5017d
+SHA512 (R/effects_4.2-1.tar.gz) = 2c8aabc684aeb17ef927e13aa5a0f5e4aaf5568d18f10edd820a7674bf7358fc5eb5ab03071852c95d1bfac7e48056662cd1887879f14c17e36bdd2b817c1c09
+Size (R/effects_4.2-1.tar.gz) = 2350440 bytes