CVS commit: pkgsrc/biology/biolibc-tools

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Sat Jun 11 19:44:46 UTC 2022

Modified Files:
        pkgsrc/biology/biolibc-tools: Makefile PLIST distinfo

Log Message:
biology/biolibc-tools: Update to 0.1.3

Add vcf-downsample subcommand
Improvements to build system
extract-seq: Recurse to output subfeatures
Numerous other minor enhancements and fixes
Changes: https://github.com/auerlab/biolibc-tools/releases


To generate a diff of this commit:
cvs rdiff -u -r1.3 -r1.4 pkgsrc/biology/biolibc-tools/Makefile \
    pkgsrc/biology/biolibc-tools/PLIST
cvs rdiff -u -r1.5 -r1.6 pkgsrc/biology/biolibc-tools/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/biolibc-tools/Makefile
diff -u pkgsrc/biology/biolibc-tools/Makefile:1.3 pkgsrc/biology/biolibc-tools/Makefile:1.4
--- pkgsrc/biology/biolibc-tools/Makefile:1.3   Tue Mar 15 21:10:59 2022
+++ pkgsrc/biology/biolibc-tools/Makefile       Sat Jun 11 19:44:45 2022
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.3 2022/03/15 21:10:59 bacon Exp $
+# $NetBSD: Makefile,v 1.4 2022/06/11 19:44:45 bacon Exp $
 
-DISTNAME=      biolibc-tools-0.1.2
+DISTNAME=      biolibc-tools-0.1.3
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
 
Index: pkgsrc/biology/biolibc-tools/PLIST
diff -u pkgsrc/biology/biolibc-tools/PLIST:1.3 pkgsrc/biology/biolibc-tools/PLIST:1.4
--- pkgsrc/biology/biolibc-tools/PLIST:1.3      Tue Mar 15 21:10:59 2022
+++ pkgsrc/biology/biolibc-tools/PLIST  Sat Jun 11 19:44:45 2022
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.3 2022/03/15 21:10:59 bacon Exp $
+@comment $NetBSD: PLIST,v 1.4 2022/06/11 19:44:45 bacon Exp $
 bin/blt
 libexec/biolibc-tools/chrom-lens
 libexec/biolibc-tools/ensemblid2gene
@@ -11,6 +11,7 @@ libexec/biolibc-tools/fastx2tsv
 libexec/biolibc-tools/find-orfs
 libexec/biolibc-tools/gff2bed
 libexec/biolibc-tools/uniq-seqs.awk
+libexec/biolibc-tools/vcf-downsample
 libexec/biolibc-tools/vcf-search
 man/man1/blt-chrom-lens.1
 man/man1/blt-ensemblid2gene.1
@@ -22,5 +23,6 @@ man/man1/blt-fastx-stats.1
 man/man1/blt-fastx2tsv.1
 man/man1/blt-find-orfs.1
 man/man1/blt-gff2bed.1
+man/man1/blt-vcf-downsample.1
 man/man1/blt-vcf-search.1
 man/man1/blt.1

Index: pkgsrc/biology/biolibc-tools/distinfo
diff -u pkgsrc/biology/biolibc-tools/distinfo:1.5 pkgsrc/biology/biolibc-tools/distinfo:1.6
--- pkgsrc/biology/biolibc-tools/distinfo:1.5   Tue Mar 15 21:10:59 2022
+++ pkgsrc/biology/biolibc-tools/distinfo       Sat Jun 11 19:44:45 2022
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.5 2022/03/15 21:10:59 bacon Exp $
+$NetBSD: distinfo,v 1.6 2022/06/11 19:44:45 bacon Exp $
 
-BLAKE2s (biolibc-tools-0.1.2.tar.gz) = a97bd90a51e11c136d78a403d34be4588a2364844c8ae1f2d8daa68db175d116
-SHA512 (biolibc-tools-0.1.2.tar.gz) = c6d0686e6a2be32f35c84d97bf489cd2a7a08416caa11b1defdb818a9aaed4e6c6db0482206bb31cfa1edf7d99f972d4990369aed38833515efde9bf89bbbd27
-Size (biolibc-tools-0.1.2.tar.gz) = 24610 bytes
+BLAKE2s (biolibc-tools-0.1.3.tar.gz) = 923b3f7794526c2f79decb1cb1dcadb6c742cc6bae77ff0c8543726ec42d2c64
+SHA512 (biolibc-tools-0.1.3.tar.gz) = 7bf2570c1635b4a363c58a1a7b7c1b9dccd4ac135be06dd6207c0e7c555a15847d3de95ea8fc94541cdabc1625e0d9a665a1473bc80709df7756fc2f8345da9e
+Size (biolibc-tools-0.1.3.tar.gz) = 27735 bytes