CVS commit: pkgsrc/math/py-scipy

["Havard Eidnes" <he%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   he
Date:           Sat Jul 30 16:13:48 UTC 2022

Modified Files:
        pkgsrc/math/py-scipy: Makefile distinfo
Added Files:
        pkgsrc/math/py-scipy/patches: patch-scipy_stats__unuran_setup.py

Log Message:
math/py-scipy: fix build on NetBSD/powerpc (at least!)

In the unuran part, omit defining _ISOC99_SOURCE.  I am told that
the ieeefp.h header should not be used with _ISOC99_SOURCE.  (Its
use comes from pyport.h.)  Lately I've seen this package fail to
build also for aarch64, have not verified that this fixes it, though
it's not entirely impossible.

Fixes what triggered PR#56892.

Bump PKGREVISION.


To generate a diff of this commit:
cvs rdiff -u -r1.59 -r1.60 pkgsrc/math/py-scipy/Makefile
cvs rdiff -u -r1.36 -r1.37 pkgsrc/math/py-scipy/distinfo
cvs rdiff -u -r0 -r1.1 \
    pkgsrc/math/py-scipy/patches/patch-scipy_stats__unuran_setup.py

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/py-scipy/Makefile
diff -u pkgsrc/math/py-scipy/Makefile:1.59 pkgsrc/math/py-scipy/Makefile:1.60
--- pkgsrc/math/py-scipy/Makefile:1.59  Tue Jun 28 11:34:45 2022
+++ pkgsrc/math/py-scipy/Makefile       Sat Jul 30 16:13:47 2022
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.59 2022/06/28 11:34:45 wiz Exp $
+# $NetBSD: Makefile,v 1.60 2022/07/30 16:13:47 he Exp $
 
 DISTNAME=      scipy-1.8.1
-PKGREVISION=   2
+PKGREVISION=   3
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=s/scipy/}

Index: pkgsrc/math/py-scipy/distinfo
diff -u pkgsrc/math/py-scipy/distinfo:1.36 pkgsrc/math/py-scipy/distinfo:1.37
--- pkgsrc/math/py-scipy/distinfo:1.36  Fri May 27 16:59:50 2022
+++ pkgsrc/math/py-scipy/distinfo       Sat Jul 30 16:13:47 2022
@@ -1,4 +1,4 @@
-$NetBSD: distinfo,v 1.36 2022/05/27 16:59:50 tnn Exp $
+$NetBSD: distinfo,v 1.37 2022/07/30 16:13:47 he Exp $
 
 BLAKE2s (scipy-1.8.1.tar.gz) = 364d6645a49d897429094a406e6073e124c1ebca01f4be63ebe401b660d8df38
 SHA512 (scipy-1.8.1.tar.gz) = f6fc71c209991fe82baa4b10d8ade0deb1057f6f5942a91dfb7ae45f3eb78a4535efa2861badf5e2d37239fa99dbd99de760aa7e4854b95991ade0263004e7ea
@@ -6,3 +6,4 @@ Size (scipy-1.8.1.tar.gz) = 38196215 byt
 SHA1 (patch-scipy_spatial_ckdtree_src_ckdtree__decl.h) = ad0e4a79af2a3b0667e61f205f5b8453ea440498
 SHA1 (patch-scipy_special___logit.h) = c729c2b73de00cad4c9ad834a79b80dea7b05af3
 SHA1 (patch-scipy_special___round.h) = bc05a935e6423ce8395450ad3b30e88826939422
+SHA1 (patch-scipy_stats__unuran_setup.py) = 9839f589fdfe7f1f74e84f32526a2ce96a28d04a

Added files:

Index: pkgsrc/math/py-scipy/patches/patch-scipy_stats__unuran_setup.py
diff -u /dev/null pkgsrc/math/py-scipy/patches/patch-scipy_stats__unuran_setup.py:1.1
--- /dev/null   Sat Jul 30 16:13:48 2022
+++ pkgsrc/math/py-scipy/patches/patch-scipy_stats__unuran_setup.py     Sat Jul 30 16:13:48 2022
@@ -0,0 +1,16 @@
+$NetBSD: patch-scipy_stats__unuran_setup.py,v 1.1 2022/07/30 16:13:48 he Exp $
+
+On NetBSD/powerpc, you can't build with _ISOC99_SOURCE defined,
+the include of <ieeefp.h> deep down in the python headers will fail
+with undefined types.
+
+--- ./scipy/stats/_unuran/setup.py.orig        2022-05-16 12:36:53.864307900 +0000
++++ ./scipy/stats/_unuran/setup.py
+@@ -95,7 +95,6 @@ def configuration(parent_package="", top
+         ("UNUR_ENABLE_INFO", "1"),
+         ("VERSION", '"%s"' % UNURAN_VERSION),
+         ("HAVE_CONFIG_H", "1"),
+-        ("_ISOC99_SOURCE", "1"),
+     ]
+ 
+     UNURAN_DIRS = [