CVS commit: pkgsrc/biology/biolibc-tools

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Sat Aug 12 14:51:02 UTC 2023

Modified Files:
        pkgsrc/biology/biolibc-tools: Makefile PLIST distinfo

Log Message:
biology/biolibc-tools: Update to 0.1.4.9

Updates for biolibc GFF3 API changes


To generate a diff of this commit:
cvs rdiff -u -r1.9 -r1.10 pkgsrc/biology/biolibc-tools/Makefile
cvs rdiff -u -r1.8 -r1.9 pkgsrc/biology/biolibc-tools/PLIST
cvs rdiff -u -r1.10 -r1.11 pkgsrc/biology/biolibc-tools/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/biolibc-tools/Makefile
diff -u pkgsrc/biology/biolibc-tools/Makefile:1.9 pkgsrc/biology/biolibc-tools/Makefile:1.10
--- pkgsrc/biology/biolibc-tools/Makefile:1.9   Wed Jun 14 18:43:33 2023
+++ pkgsrc/biology/biolibc-tools/Makefile       Sat Aug 12 14:51:02 2023
@@ -1,9 +1,9 @@
-# $NetBSD: Makefile,v 1.9 2023/06/14 18:43:33 bacon Exp $
+# $NetBSD: Makefile,v 1.10 2023/08/12 14:51:02 bacon Exp $
 
-DISTNAME=      biolibc-tools-0.1.4.6
+DISTNAME=      biolibc-tools-0.1.4.9
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=    b221258195460922eb461cfee58e7f329fdb4fe7
+GITHUB_TAG=    6d9604303fa43418a423840c916407af2b069184
 
 OWNER=         bacon%NetBSD.org@localhost
 HOMEPAGE=      https://github.com/auerlab/biolibc-tools

Index: pkgsrc/biology/biolibc-tools/PLIST
diff -u pkgsrc/biology/biolibc-tools/PLIST:1.8 pkgsrc/biology/biolibc-tools/PLIST:1.9
--- pkgsrc/biology/biolibc-tools/PLIST:1.8      Wed Jun 14 18:43:33 2023
+++ pkgsrc/biology/biolibc-tools/PLIST  Sat Aug 12 14:51:02 2023
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.8 2023/06/14 18:43:33 bacon Exp $
+@comment $NetBSD: PLIST,v 1.9 2023/08/12 14:51:02 bacon Exp $
 bin/blt
 libexec/biolibc-tools/chrom-lens
 libexec/biolibc-tools/deromanize
@@ -10,7 +10,7 @@ libexec/biolibc-tools/fastx-derep
 libexec/biolibc-tools/fastx-stats
 libexec/biolibc-tools/fastx2tsv
 libexec/biolibc-tools/find-orfs
-libexec/biolibc-tools/gff2bed
+libexec/biolibc-tools/gff3-to-bed
 libexec/biolibc-tools/uniq-seqs.awk
 libexec/biolibc-tools/vcf-downsample
 libexec/biolibc-tools/vcf-search
@@ -24,7 +24,7 @@ man/man1/blt-fastx-derep.1
 man/man1/blt-fastx-stats.1
 man/man1/blt-fastx2tsv.1
 man/man1/blt-find-orfs.1
-man/man1/blt-gff2bed.1
+man/man1/blt-gff3-to-bed.1
 man/man1/blt-vcf-downsample.1
 man/man1/blt-vcf-search.1
 man/man1/blt.1

Index: pkgsrc/biology/biolibc-tools/distinfo
diff -u pkgsrc/biology/biolibc-tools/distinfo:1.10 pkgsrc/biology/biolibc-tools/distinfo:1.11
--- pkgsrc/biology/biolibc-tools/distinfo:1.10  Wed Jun 14 18:43:33 2023
+++ pkgsrc/biology/biolibc-tools/distinfo       Sat Aug 12 14:51:02 2023
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.10 2023/06/14 18:43:33 bacon Exp $
+$NetBSD: distinfo,v 1.11 2023/08/12 14:51:02 bacon Exp $
 
-BLAKE2s (biolibc-tools-0.1.4.6-b221258195460922eb461cfee58e7f329fdb4fe7.tar.gz) = 8924f4b3f6855d832ddd5fe84f5b6f3cfcc26911edb5cac8f833f020010fb30c
-SHA512 (biolibc-tools-0.1.4.6-b221258195460922eb461cfee58e7f329fdb4fe7.tar.gz) = 
def4bf157321c27885b2c93ae78d3bb97d836f7ae8ca6dee3eebb400e89149717948b9241119a4cf5e0290608c3689445fd12c87ce6f38970ae432b6ec701ac1
-Size (biolibc-tools-0.1.4.6-b221258195460922eb461cfee58e7f329fdb4fe7.tar.gz) = 29336 bytes
+BLAKE2s (biolibc-tools-0.1.4.9-6d9604303fa43418a423840c916407af2b069184.tar.gz) = d8bc31f97acf3957cb32a117be7a26ca4ef7c8548b7fa3d4424f0cce8e87a2a8
+SHA512 (biolibc-tools-0.1.4.9-6d9604303fa43418a423840c916407af2b069184.tar.gz) = 
63fec7604fdab6f698776c8c7c306b2f45681c569f8f40ebed5fbe3c6e16b5cb636ad5d70d2f15ab10e68fdc27ffa0c7d27d5e612588b3647684050e47c5f463
+Size (biolibc-tools-0.1.4.9-6d9604303fa43418a423840c916407af2b069184.tar.gz) = 29365 bytes