CVS commit: pkgsrc/devel/py-h5py

["Adam Ciarcinski" <adam%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   adam
Date:           Thu Aug 31 11:58:40 UTC 2023

Modified Files:
        pkgsrc/devel/py-h5py: Makefile PLIST distinfo
Removed Files:
        pkgsrc/devel/py-h5py/patches: patch-setup.py

Log Message:
py-h5py: updated to 3.9.0

What's new in h5py 3.9
======================

This version of h5py requires Python 3.8 or above.

New features
------------

* New ``out`` argument to :meth:`~h5py.h5d.DatasetID.read_direct_chunk` to allow passing
  the output buffer (:pr:`2232`).
* The objects from :meth:`.Dataset.asstr` and :meth:`.Dataset.astype` now
  implement the ``__array__()`` method (:pr:`2269`).
  This speeds up access for functions that support it, such as ``np.asarray()``.
* Validate key types when creating groups and attributes, giving better error
  messages when invalid types are used (:pr:`2266`).

Deprecations & removals
-----------------------

* Using :meth:`.Dataset.astype` as a context manager has been removed, after
  being deprecated in h5py 3.6. Read data by slicing the returned object instead:
  ``dset.astype('f4')[:]``.

Exposing HDF5 functions
-----------------------

* ``H5Pget_elink_acc_flags`` & ``H5Pset_elink_acc_flags`` as
  :meth:`h5py.h5p.PropLAID.get_elink_acc_flags` & :meth:`h5py.h5p.PropLAID.set_elink_acc_flags`:
  access the external link file access traversal flags in a link access property
  list (:pr:`2244`).
* ``H5Zregister`` as :func:`h5py.h5z.register_filter`: register an HDF5 filter
  (:pr:`2229`).

Bug fixes
---------

* ``Group.__contains__`` and ``Group.get`` now use the default link access
  property list systematically (:pr:`2244`).
* Removed various calls to the deprecated ``numpy.product`` function (:pr:`2242`
  & :pr:`2273`).
* Fix the IPython tab-completion integration in IPython 8.12 (:pr:2256`).
* Replacing attributes with :meth:`.AttributeManager.create` now deletes the old
  attributes before creating the new one, rather than using a temporary name
  and renaming the new attribute (:pr:`2274`). This should avoid some confusing
  bugs affecting attributes. However, failures creating an attribute are less
  likely to leave an existing attribute of the same name in place. To change an
  attribute value without changing its shape or dtype, use
  :meth:`~.AttributeManager.modify` instead.

Building h5py
-------------

* When building with :ref:`parallel` support, the version of mpi4py used on
  various Python versions is increased to 3.1.1, fixing building with a newer
  setuptools (:pr:`2225`).
* Some fixes towards compatibility with the upcoming Cython 3 (:pr:`2247`).


To generate a diff of this commit:
cvs rdiff -u -r1.16 -r1.17 pkgsrc/devel/py-h5py/Makefile
cvs rdiff -u -r1.7 -r1.8 pkgsrc/devel/py-h5py/PLIST
cvs rdiff -u -r1.10 -r1.11 pkgsrc/devel/py-h5py/distinfo
cvs rdiff -u -r1.1 -r0 pkgsrc/devel/py-h5py/patches/patch-setup.py

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/devel/py-h5py/Makefile
diff -u pkgsrc/devel/py-h5py/Makefile:1.16 pkgsrc/devel/py-h5py/Makefile:1.17
--- pkgsrc/devel/py-h5py/Makefile:1.16  Tue Aug  1 23:20:40 2023
+++ pkgsrc/devel/py-h5py/Makefile       Thu Aug 31 11:58:40 2023
@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.16 2023/08/01 23:20:40 wiz Exp $
+# $NetBSD: Makefile,v 1.17 2023/08/31 11:58:40 adam Exp $
 
-DISTNAME=      h5py-3.2.1
+DISTNAME=      h5py-3.9.0
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
-PKGREVISION=   1
 CATEGORIES=    devel python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=h/h5py/}
 
@@ -11,9 +10,6 @@ HOMEPAGE=     https://www.h5py.org/
 COMMENT=       Python interface to the HDF5 library
 LICENSE=       modified-bsd
 
-TOOL_DEPENDS+= ${PYPKGPREFIX}-pkgconfig-[0-9]*:../../devel/py-pkgconfig
-DEPENDS+=      ${PYPKGPREFIX}-six-[0-9]*:../../lang/py-six
-
 MAKE_ENV=      HDF5_DIR=${PREFIX}
 
 PYTHON_VERSIONS_INCOMPATIBLE=  27 38

Index: pkgsrc/devel/py-h5py/PLIST
diff -u pkgsrc/devel/py-h5py/PLIST:1.7 pkgsrc/devel/py-h5py/PLIST:1.8
--- pkgsrc/devel/py-h5py/PLIST:1.7      Mon Jun  7 11:57:50 2021
+++ pkgsrc/devel/py-h5py/PLIST  Thu Aug 31 11:58:40 2023
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.7 2021/06/07 11:57:50 adam Exp $
+@comment $NetBSD: PLIST,v 1.8 2023/08/31 11:58:40 adam Exp $
 ${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
 ${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
 ${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
@@ -138,6 +138,9 @@ ${PYSITELIB}/h5py/tests/test_file.pyo
 ${PYSITELIB}/h5py/tests/test_file2.py
 ${PYSITELIB}/h5py/tests/test_file2.pyc
 ${PYSITELIB}/h5py/tests/test_file2.pyo
+${PYSITELIB}/h5py/tests/test_file_alignment.py
+${PYSITELIB}/h5py/tests/test_file_alignment.pyc
+${PYSITELIB}/h5py/tests/test_file_alignment.pyo
 ${PYSITELIB}/h5py/tests/test_file_image.py
 ${PYSITELIB}/h5py/tests/test_file_image.pyc
 ${PYSITELIB}/h5py/tests/test_file_image.pyo
@@ -168,9 +171,15 @@ ${PYSITELIB}/h5py/tests/test_h5pl.pyo
 ${PYSITELIB}/h5py/tests/test_h5t.py
 ${PYSITELIB}/h5py/tests/test_h5t.pyc
 ${PYSITELIB}/h5py/tests/test_h5t.pyo
+${PYSITELIB}/h5py/tests/test_h5z.py
+${PYSITELIB}/h5py/tests/test_h5z.pyc
+${PYSITELIB}/h5py/tests/test_h5z.pyo
 ${PYSITELIB}/h5py/tests/test_objects.py
 ${PYSITELIB}/h5py/tests/test_objects.pyc
 ${PYSITELIB}/h5py/tests/test_objects.pyo
+${PYSITELIB}/h5py/tests/test_ros3.py
+${PYSITELIB}/h5py/tests/test_ros3.pyc
+${PYSITELIB}/h5py/tests/test_ros3.pyo
 ${PYSITELIB}/h5py/tests/test_selections.py
 ${PYSITELIB}/h5py/tests/test_selections.pyc
 ${PYSITELIB}/h5py/tests/test_selections.pyo

Index: pkgsrc/devel/py-h5py/distinfo
diff -u pkgsrc/devel/py-h5py/distinfo:1.10 pkgsrc/devel/py-h5py/distinfo:1.11
--- pkgsrc/devel/py-h5py/distinfo:1.10  Tue Oct 26 10:18:32 2021
+++ pkgsrc/devel/py-h5py/distinfo       Thu Aug 31 11:58:40 2023
@@ -1,6 +1,5 @@
-$NetBSD: distinfo,v 1.10 2021/10/26 10:18:32 nia Exp $
+$NetBSD: distinfo,v 1.11 2023/08/31 11:58:40 adam Exp $
 
-BLAKE2s (h5py-3.2.1.tar.gz) = 288eb4507abc49edc179e806b3f960cccf87adc576644e314f1e50bda0e32d5d
-SHA512 (h5py-3.2.1.tar.gz) = c98f935f800f340239fdd5132534a3b79995dc952250521f0bd6972a60c34c21bb56d7ca3f1c655ad9d1e47fc5792f434f88a0919ae75bc9102e659bf4f1c284
-Size (h5py-3.2.1.tar.gz) = 368170 bytes
-SHA1 (patch-setup.py) = a1a2643b899224500368ec403d86089822ee6cda
+BLAKE2s (h5py-3.9.0.tar.gz) = 32e67c2ac8c5c4d97abb295d8d1e8653d4f1cfbfd7e08d79af44a455124c8a3c
+SHA512 (h5py-3.9.0.tar.gz) = f87cb36ba874e86b179776031c3345ad83bc7b5eff2f3ee54acb6b0997cc7925c17dc478957103ab6bb07d8aaa8593af1d51c3547021a205e9d01c0e36d833a9
+Size (h5py-3.9.0.tar.gz) = 402856 bytes