CVS commit: pkgsrc/biology/fasda

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Sat Oct 28 20:33:41 UTC 2023

Modified Files:
        pkgsrc/biology/fasda: Makefile PLIST distinfo

Log Message:
biology/fasda: Update to 0.1.5

abundance:
    Update stringtie command to also produce gene-level abundances
    Output 0 for effective length for now to clearly indicate that it's invalid
normalize: Add --debug option
    Updates for latest libxtend API
Test -> Yeast-test
Add Mouse-test suite with multiple mouse data options
Streamline test scripts

Changes: https://github.com/auerlab/fasda/releases


To generate a diff of this commit:
cvs rdiff -u -r1.5 -r1.6 pkgsrc/biology/fasda/Makefile
cvs rdiff -u -r1.4 -r1.5 pkgsrc/biology/fasda/PLIST \
    pkgsrc/biology/fasda/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/fasda/Makefile
diff -u pkgsrc/biology/fasda/Makefile:1.5 pkgsrc/biology/fasda/Makefile:1.6
--- pkgsrc/biology/fasda/Makefile:1.5   Sat Aug 12 15:02:00 2023
+++ pkgsrc/biology/fasda/Makefile       Sat Oct 28 20:33:41 2023
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.5 2023/08/12 15:02:00 bacon Exp $
+# $NetBSD: Makefile,v 1.6 2023/10/28 20:33:41 bacon Exp $
 
-DISTNAME=      fasda-0.1.4
+DISTNAME=      fasda-0.1.5
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
 

Index: pkgsrc/biology/fasda/PLIST
diff -u pkgsrc/biology/fasda/PLIST:1.4 pkgsrc/biology/fasda/PLIST:1.5
--- pkgsrc/biology/fasda/PLIST:1.4      Sat Aug 12 15:02:00 2023
+++ pkgsrc/biology/fasda/PLIST  Sat Oct 28 20:33:41 2023
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.4 2023/08/12 15:02:00 bacon Exp $
+@comment $NetBSD: PLIST,v 1.5 2023/10/28 20:33:41 bacon Exp $
 bin/fasda
 libexec/fasda/abundance
 libexec/fasda/fold-change
Index: pkgsrc/biology/fasda/distinfo
diff -u pkgsrc/biology/fasda/distinfo:1.4 pkgsrc/biology/fasda/distinfo:1.5
--- pkgsrc/biology/fasda/distinfo:1.4   Sat Aug 12 15:02:00 2023
+++ pkgsrc/biology/fasda/distinfo       Sat Oct 28 20:33:41 2023
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.4 2023/08/12 15:02:00 bacon Exp $
+$NetBSD: distinfo,v 1.5 2023/10/28 20:33:41 bacon Exp $
 
-BLAKE2s (fasda-0.1.4.tar.gz) = ad32eaef6ed1c5f74812f7af62d5cbb0d665013b1a0221a8bf7236f73a80c0c6
-SHA512 (fasda-0.1.4.tar.gz) = 96837c99035692dc67d23eda814363cd8bdd38bc8924ebec7b63a4b0d30333d77ff822d365ee27c92f598242a73c3ee019948c18eb4a16aee627c2f666a5d467
-Size (fasda-0.1.4.tar.gz) = 65254 bytes
+BLAKE2s (fasda-0.1.5.tar.gz) = 4af2c1483c64245407af469be24f2ec08148bfca155bb45df3647daae7076275
+SHA512 (fasda-0.1.5.tar.gz) = e11df85077ef5c7fadc74d7aada55304eb590a1b2e8ee22cb75c507012a1a88d18e2529da7a7241a7b45134ea7d0054c0f2bb5e9be3ad6012155a0b088f4cd93
+Size (fasda-0.1.5.tar.gz) = 77908 bytes