CVS commit: pkgsrc/biology/peak-classifier

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Sat Oct 28 20:37:17 UTC 2023

Modified Files:
        pkgsrc/biology/peak-classifier: DESCR Makefile PLIST distinfo

Log Message:
biology/peak-classifier: Update to 0.1.4.13

Updates for new libxtend API


To generate a diff of this commit:
cvs rdiff -u -r1.1 -r1.2 pkgsrc/biology/peak-classifier/DESCR
cvs rdiff -u -r1.12 -r1.13 pkgsrc/biology/peak-classifier/Makefile
cvs rdiff -u -r1.9 -r1.10 pkgsrc/biology/peak-classifier/PLIST
cvs rdiff -u -r1.11 -r1.12 pkgsrc/biology/peak-classifier/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/peak-classifier/DESCR
diff -u pkgsrc/biology/peak-classifier/DESCR:1.1 pkgsrc/biology/peak-classifier/DESCR:1.2
--- pkgsrc/biology/peak-classifier/DESCR:1.1    Tue Jun 15 13:54:14 2021
+++ pkgsrc/biology/peak-classifier/DESCR        Sat Oct 28 20:37:17 2023
@@ -1,5 +1,6 @@
 Classify ChIP/ATAC-Seq peaks based on features provided in a GFF
-Peaks are provided in a BED file sorted by chromosome and position. The GFF
-must be sorted by chromosome and position, with gene-level features separated
-by ### tags and each gene organized into subfeatures such as transcripts and
-exons.  This is the default for common data sources.
+Peaks are provided in a BED file sorted by chromosome and position.
+The GFF must be sorted by chromosome and position, with gene-level
+features separated by ### tags and each gene organized into
+subfeatures such as transcripts and exons.  This is the default
+for common data sources.

Index: pkgsrc/biology/peak-classifier/Makefile
diff -u pkgsrc/biology/peak-classifier/Makefile:1.12 pkgsrc/biology/peak-classifier/Makefile:1.13
--- pkgsrc/biology/peak-classifier/Makefile:1.12        Mon Aug 14 05:23:52 2023
+++ pkgsrc/biology/peak-classifier/Makefile     Sat Oct 28 20:37:17 2023
@@ -1,10 +1,9 @@
-# $NetBSD: Makefile,v 1.12 2023/08/14 05:23:52 wiz Exp $
+# $NetBSD: Makefile,v 1.13 2023/10/28 20:37:17 bacon Exp $
 
-DISTNAME=      peak-classifier-0.1.4.11
-PKGREVISION=   1
+DISTNAME=      peak-classifier-0.1.4.13
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG=    394f61cb00eadcd07b0d7d2df4631502c0aa46d4
+GITHUB_TAG=    fb89af3b2e976c2ccb42d861324aa40591f5cadb
 
 OWNER=         bacon%NetBSD.org@localhost
 HOMEPAGE=      https://github.com/auerlab/peak-classifier

Index: pkgsrc/biology/peak-classifier/PLIST
diff -u pkgsrc/biology/peak-classifier/PLIST:1.9 pkgsrc/biology/peak-classifier/PLIST:1.10
--- pkgsrc/biology/peak-classifier/PLIST:1.9    Sat Aug 12 14:52:46 2023
+++ pkgsrc/biology/peak-classifier/PLIST        Sat Oct 28 20:37:17 2023
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.9 2023/08/12 14:52:46 bacon Exp $
+@comment $NetBSD: PLIST,v 1.10 2023/10/28 20:37:17 bacon Exp $
 bin/extract-genes
 bin/feature-view
 bin/filter-overlaps

Index: pkgsrc/biology/peak-classifier/distinfo
diff -u pkgsrc/biology/peak-classifier/distinfo:1.11 pkgsrc/biology/peak-classifier/distinfo:1.12
--- pkgsrc/biology/peak-classifier/distinfo:1.11        Sat Aug 12 14:52:46 2023
+++ pkgsrc/biology/peak-classifier/distinfo     Sat Oct 28 20:37:17 2023
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.11 2023/08/12 14:52:46 bacon Exp $
+$NetBSD: distinfo,v 1.12 2023/10/28 20:37:17 bacon Exp $
 
-BLAKE2s (peak-classifier-0.1.4.11-394f61cb00eadcd07b0d7d2df4631502c0aa46d4.tar.gz) = 4e78ebc54cf7c3e5c940ce9dfa1ee5ebcf124ef4bda52f0173ff93fa1e13c851
-SHA512 (peak-classifier-0.1.4.11-394f61cb00eadcd07b0d7d2df4631502c0aa46d4.tar.gz) = 
94f6cc97d40b251f006aba1bbc0262051b9070ea7fd13284156a508f544e1e46f38e35c66502e3478d67de47c547478d11c22a36090237dcbea21621d11e2200
-Size (peak-classifier-0.1.4.11-394f61cb00eadcd07b0d7d2df4631502c0aa46d4.tar.gz) = 87358 bytes
+BLAKE2s (peak-classifier-0.1.4.13-fb89af3b2e976c2ccb42d861324aa40591f5cadb.tar.gz) = 6f7f1bd00518dc39ecfa8fa0ab0c34436174c1366bec6e15708e255627c0dede
+SHA512 (peak-classifier-0.1.4.13-fb89af3b2e976c2ccb42d861324aa40591f5cadb.tar.gz) = 
9463b291b402613bed6a1bf4bda7d0a5508c95093eb48a5c336e42161745f66684ee86d7486f9f55505ef99faf48c1de567396e7f1e8869a587d3a96770f12d7
+Size (peak-classifier-0.1.4.13-fb89af3b2e976c2ccb42d861324aa40591f5cadb.tar.gz) = 87434 bytes