CVS commit: pkgsrc/biology/py-bcbio-gff

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Sun Nov  5 17:51:31 UTC 2023

Added Files:
        pkgsrc/biology/py-bcbio-gff: DESCR Makefile PLIST distinfo

Log Message:
biology/py-bcbio-gff: Read and write GFF files

Read and write Generic Feature Format (GFF) with Biopython
integration.  Meant to be integrated eventually into gffutils,
making this package obsolete.


To generate a diff of this commit:
cvs rdiff -u -r0 -r1.1 pkgsrc/biology/py-bcbio-gff/DESCR \
    pkgsrc/biology/py-bcbio-gff/Makefile pkgsrc/biology/py-bcbio-gff/PLIST \
    pkgsrc/biology/py-bcbio-gff/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Added files:

Index: pkgsrc/biology/py-bcbio-gff/DESCR
diff -u /dev/null pkgsrc/biology/py-bcbio-gff/DESCR:1.1
--- /dev/null   Sun Nov  5 17:51:31 2023
+++ pkgsrc/biology/py-bcbio-gff/DESCR   Sun Nov  5 17:51:31 2023
@@ -0,0 +1,3 @@
+Read and write Generic Feature Format (GFF) with Biopython
+integration.  Meant to be integrated eventually into gffutils,
+making this package obsolete.
Index: pkgsrc/biology/py-bcbio-gff/Makefile
diff -u /dev/null pkgsrc/biology/py-bcbio-gff/Makefile:1.1
--- /dev/null   Sun Nov  5 17:51:31 2023
+++ pkgsrc/biology/py-bcbio-gff/Makefile        Sun Nov  5 17:51:31 2023
@@ -0,0 +1,14 @@
+# $NetBSD: Makefile,v 1.1 2023/11/05 17:51:31 bacon Exp $
+
+DISTNAME=      bcbio-gff-0.7.0
+PKGNAME=       ${PYPKGPREFIX}-bcbio-gff-0.7.0
+CATEGORIES=    biology
+MASTER_SITES=  ${MASTER_SITE_PYPI:=b/bcbio-gff/}
+
+MAINTAINER=    bacon%NetBSD.org@localhost
+HOMEPAGE=      https://pypi.python.org/project/bcbio-gff/
+COMMENT=       Read and write Generic Feature Format (GFF) with Biopython integration
+LICENSE=       modified-bsd
+
+.include "../../lang/python/egg.mk"
+.include "../../mk/bsd.pkg.mk"
Index: pkgsrc/biology/py-bcbio-gff/PLIST
diff -u /dev/null pkgsrc/biology/py-bcbio-gff/PLIST:1.1
--- /dev/null   Sun Nov  5 17:51:31 2023
+++ pkgsrc/biology/py-bcbio-gff/PLIST   Sun Nov  5 17:51:31 2023
@@ -0,0 +1,21 @@
+@comment $NetBSD: PLIST,v 1.1 2023/11/05 17:51:31 bacon Exp $
+${PYSITELIB}/BCBio/GFF/GFFOutput.py
+${PYSITELIB}/BCBio/GFF/GFFOutput.pyc
+${PYSITELIB}/BCBio/GFF/GFFOutput.pyo
+${PYSITELIB}/BCBio/GFF/GFFParser.py
+${PYSITELIB}/BCBio/GFF/GFFParser.pyc
+${PYSITELIB}/BCBio/GFF/GFFParser.pyo
+${PYSITELIB}/BCBio/GFF/__init__.py
+${PYSITELIB}/BCBio/GFF/__init__.pyc
+${PYSITELIB}/BCBio/GFF/__init__.pyo
+${PYSITELIB}/BCBio/GFF/_utils.py
+${PYSITELIB}/BCBio/GFF/_utils.pyc
+${PYSITELIB}/BCBio/GFF/_utils.pyo
+${PYSITELIB}/BCBio/__init__.py
+${PYSITELIB}/BCBio/__init__.pyc
+${PYSITELIB}/BCBio/__init__.pyo
+${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
+${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
+${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
+${PYSITELIB}/${EGG_INFODIR}/requires.txt
+${PYSITELIB}/${EGG_INFODIR}/top_level.txt
Index: pkgsrc/biology/py-bcbio-gff/distinfo
diff -u /dev/null pkgsrc/biology/py-bcbio-gff/distinfo:1.1
--- /dev/null   Sun Nov  5 17:51:31 2023
+++ pkgsrc/biology/py-bcbio-gff/distinfo        Sun Nov  5 17:51:31 2023
@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.1 2023/11/05 17:51:31 bacon Exp $
+
+BLAKE2s (bcbio-gff-0.7.0.tar.gz) = cd9552901386757d625b2bcef204c6aba12f9219727aff4e866e9c0cb10904fb
+SHA512 (bcbio-gff-0.7.0.tar.gz) = 3251c31e714633e0ea97c2114392563051e4076ded1754c3064c2f79fcc108fffe80f76a49a711032c6871829f87548b4fc8b328a0ea272ec51fe41c6f85a356
+Size (bcbio-gff-0.7.0.tar.gz) = 20041 bytes