CVS commit: pkgsrc/biology/plinkseq

["Thomas Klausner" <wiz%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   wiz
Date:           Thu Nov 23 09:04:24 UTC 2023

Modified Files:
        pkgsrc/biology/plinkseq: distinfo
        pkgsrc/biology/plinkseq/patches: patch-browser_main.c
            patch-lib_annot.cpp patch-lib_annot.h patch-lib_token.cpp

Log Message:
plinkseq: fix some pkglint


To generate a diff of this commit:
cvs rdiff -u -r1.7 -r1.8 pkgsrc/biology/plinkseq/distinfo
cvs rdiff -u -r1.1 -r1.2 pkgsrc/biology/plinkseq/patches/patch-browser_main.c \
    pkgsrc/biology/plinkseq/patches/patch-lib_annot.cpp \
    pkgsrc/biology/plinkseq/patches/patch-lib_annot.h \
    pkgsrc/biology/plinkseq/patches/patch-lib_token.cpp

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/plinkseq/distinfo
diff -u pkgsrc/biology/plinkseq/distinfo:1.7 pkgsrc/biology/plinkseq/distinfo:1.8
--- pkgsrc/biology/plinkseq/distinfo:1.7        Tue Oct 26 10:03:42 2021
+++ pkgsrc/biology/plinkseq/distinfo    Thu Nov 23 09:04:24 2023
@@ -1,10 +1,10 @@
-$NetBSD: distinfo,v 1.7 2021/10/26 10:03:42 nia Exp $
+$NetBSD: distinfo,v 1.8 2023/11/23 09:04:24 wiz Exp $
 
 BLAKE2s (plinkseq-0.08.tar.gz) = 4ea19b9ed7945d1ba1fc9485e147ee86bbf1a5537e2a5d41c8f160a963100f21
 SHA512 (plinkseq-0.08.tar.gz) = c82db774df26988f9af377d5493cf579bbf1a219b43987f74381f795ade2340dd486c8d7d629612fd6068a023ea605540f2c972bf7fb71d665730262ef94cb80
 Size (plinkseq-0.08.tar.gz) = 2991871 bytes
-SHA1 (patch-browser_main.c) = 2bbeed764180b0a0e30f134b40c650cfa20bdcec
+SHA1 (patch-browser_main.c) = 14df91271b4705ed06321b6acecd73f026963d01
 SHA1 (patch-browser_mongoose.c) = 02716eb71171edd37ae483d98a045c261e65defe
-SHA1 (patch-lib_annot.cpp) = b405bca26186ea08241ad5936c2a1b43212d8dec
-SHA1 (patch-lib_annot.h) = 5efccddf878b4628ae7186d59a726a157d356196
-SHA1 (patch-lib_token.cpp) = 848e7b790db6a4784697482ea330b4d474731368
+SHA1 (patch-lib_annot.cpp) = 408756e64603e01c19d57fe0431e6b4629a7687c
+SHA1 (patch-lib_annot.h) = 518bab5356a662cdc685050ee5e6c9d73bcff50c
+SHA1 (patch-lib_token.cpp) = d30b25f867dd79ef0c0c6e8b089fcc437f5ef777

Index: pkgsrc/biology/plinkseq/patches/patch-browser_main.c
diff -u pkgsrc/biology/plinkseq/patches/patch-browser_main.c:1.1 pkgsrc/biology/plinkseq/patches/patch-browser_main.c:1.2
--- pkgsrc/biology/plinkseq/patches/patch-browser_main.c:1.1    Sat Feb  8 12:27:14 2014
+++ pkgsrc/biology/plinkseq/patches/patch-browser_main.c        Thu Nov 23 09:04:24 2023
@@ -1,6 +1,7 @@
-$NetBSD: patch-browser_main.c,v 1.1 2014/02/08 12:27:14 wiedi Exp $
+$NetBSD: patch-browser_main.c,v 1.2 2023/11/23 09:04:24 wiz Exp $
 
 not needed on sunos
+
 --- browser/main.c.orig        2011-11-17 17:17:36.000000000 +0000
 +++ browser/main.c
 @@ -21,8 +21,10 @@
Index: pkgsrc/biology/plinkseq/patches/patch-lib_annot.cpp
diff -u pkgsrc/biology/plinkseq/patches/patch-lib_annot.cpp:1.1 pkgsrc/biology/plinkseq/patches/patch-lib_annot.cpp:1.2
--- pkgsrc/biology/plinkseq/patches/patch-lib_annot.cpp:1.1     Sat Feb  8 12:27:14 2014
+++ pkgsrc/biology/plinkseq/patches/patch-lib_annot.cpp Thu Nov 23 09:04:24 2023
@@ -1,6 +1,7 @@
-$NetBSD: patch-lib_annot.cpp,v 1.1 2014/02/08 12:27:14 wiedi Exp $
+$NetBSD: patch-lib_annot.cpp,v 1.2 2023/11/23 09:04:24 wiz Exp $
 
 rename to avoid collision on sunos
+
 --- lib/annot.cpp.orig 2012-03-19 20:00:45.000000000 +0000
 +++ lib/annot.cpp
 @@ -34,7 +34,7 @@ std::map<seq_annot_t,std::string> popula
Index: pkgsrc/biology/plinkseq/patches/patch-lib_annot.h
diff -u pkgsrc/biology/plinkseq/patches/patch-lib_annot.h:1.1 pkgsrc/biology/plinkseq/patches/patch-lib_annot.h:1.2
--- pkgsrc/biology/plinkseq/patches/patch-lib_annot.h:1.1       Sat Feb  8 12:27:14 2014
+++ pkgsrc/biology/plinkseq/patches/patch-lib_annot.h   Thu Nov 23 09:04:24 2023
@@ -1,6 +1,7 @@
-$NetBSD: patch-lib_annot.h,v 1.1 2014/02/08 12:27:14 wiedi Exp $
+$NetBSD: patch-lib_annot.h,v 1.2 2023/11/23 09:04:24 wiz Exp $
 
 rename to avoid collision on sunos
+
 --- lib/annot.h.orig   2012-03-19 11:35:59.000000000 +0000
 +++ lib/annot.h
 @@ -35,7 +35,7 @@ enum seq_annot_t { UNDEF   =  0 ,     //
Index: pkgsrc/biology/plinkseq/patches/patch-lib_token.cpp
diff -u pkgsrc/biology/plinkseq/patches/patch-lib_token.cpp:1.1 pkgsrc/biology/plinkseq/patches/patch-lib_token.cpp:1.2
--- pkgsrc/biology/plinkseq/patches/patch-lib_token.cpp:1.1     Sat Feb  8 12:27:14 2014
+++ pkgsrc/biology/plinkseq/patches/patch-lib_token.cpp Thu Nov 23 09:04:24 2023
@@ -1,6 +1,7 @@
-$NetBSD: patch-lib_token.cpp,v 1.1 2014/02/08 12:27:14 wiedi Exp $
+$NetBSD: patch-lib_token.cpp,v 1.2 2023/11/23 09:04:24 wiz Exp $
 
 fix math ambiguity on sunos
+
 --- lib/token.cpp.orig 2012-03-17 17:06:01.000000000 +0000
 +++ lib/token.cpp
 @@ -1232,7 +1232,7 @@ Token Token::operator^(const Token & rhs