CVS commit: pkgsrc/biology/atac-seq

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Sat Dec 23 16:23:22 UTC 2023

Modified Files:
        pkgsrc/biology/atac-seq: Makefile

Log Message:
biology/atac-seq: Adjust python versions to match py-macs2

Add sra-tools and a few commonly used archivers to metapkg


To generate a diff of this commit:
cvs rdiff -u -r1.7 -r1.8 pkgsrc/biology/atac-seq/Makefile

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/atac-seq/Makefile
diff -u pkgsrc/biology/atac-seq/Makefile:1.7 pkgsrc/biology/atac-seq/Makefile:1.8
--- pkgsrc/biology/atac-seq/Makefile:1.7        Sun Nov  5 23:48:31 2023
+++ pkgsrc/biology/atac-seq/Makefile    Sat Dec 23 16:23:22 2023
@@ -1,13 +1,16 @@
-# $NetBSD: Makefile,v 1.7 2023/11/05 23:48:31 wiz Exp $
+# $NetBSD: Makefile,v 1.8 2023/12/23 16:23:22 bacon Exp $
+#
 
-DISTNAME=      atac-seq-1.2.1
-PKGREVISION=   1
+# Update minor version when adding or removing dependencies
+# Update revision for all other changes
+DISTNAME=      atac-seq-1.3
 CATEGORIES=    biology meta-pkgs
 MASTER_SITES=  # empty
 
 OWNER=         bacon%NetBSD.org@localhost
 COMMENT=       Core tools needed for ATAC-Seq analysis
 
+DEPENDS+=      sra-tools>0:../../biology/sra-tools
 DEPENDS+=      fastq-trim>0:../../biology/fastq-trim
 DEPENDS+=      fastqc>0:../../biology/fastqc
 DEPENDS+=      biolibc-tools>0:../../biology/biolibc-tools
@@ -22,11 +25,14 @@ DEPENDS+=   peak-classifier>0:../../biolog
 DEPENDS+=      ${PYPKGPREFIX}-multiqc-[0-9]*:../../biology/py-multiqc
 DEPENDS+=      webbrowser>0:../../www/webbrowser
 DEPENDS+=      curl>0:../../www/curl
+DEPENDS+=      lz4>0:../../archivers/lz4
+DEPENDS+=      xz>0:../../archivers/xz
+DEPENDS+=      zstd>0:../../archivers/zstd
 
 META_PACKAGE=  yes
 
 # Inherited from py-macs2 dep
-PYTHON_VERSIONS_INCOMPATIBLE=  27 38 312
+PYTHON_VERSIONS_INCOMPATIBLE=  27 38
 
 .include "../../lang/python/application.mk"
 .include "../../mk/bsd.pkg.mk"