CVS commit: pkgsrc/math/py-hmmlearn

To: pkgsrc-changes%NetBSD.org@localhost
Subject: CVS commit: pkgsrc/math/py-hmmlearn
From: "Jason Bacon" <bacon%netbsd.org@localhost>
Date: Fri, 29 Dec 2023 16:43:41 +0000

Module Name:    pkgsrc
Committed By:   bacon
Date:           Fri Dec 29 16:43:41 UTC 2023

Added Files:
        pkgsrc/math/py-hmmlearn: DESCR Makefile PLIST distinfo

Log Message:
math/py-hmmlearn: Inference of Hidden Markov Models

Hmmlearn is a set of algorithms for unsupervised learning and
inference of Hidden Markov Models.  For supervised learning learning
of HMMs and similar models see seqlearn.


To generate a diff of this commit:
cvs rdiff -u -r0 -r1.1 pkgsrc/math/py-hmmlearn/DESCR \
    pkgsrc/math/py-hmmlearn/Makefile pkgsrc/math/py-hmmlearn/PLIST \
    pkgsrc/math/py-hmmlearn/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Added files:

Index: pkgsrc/math/py-hmmlearn/DESCR
diff -u /dev/null pkgsrc/math/py-hmmlearn/DESCR:1.1
--- /dev/null   Fri Dec 29 16:43:41 2023
+++ pkgsrc/math/py-hmmlearn/DESCR       Fri Dec 29 16:43:41 2023
@@ -0,0 +1,3 @@
+Hmmlearn is a set of algorithms for unsupervised learning and
+inference of Hidden Markov Models.  For supervised learning learning
+of HMMs and similar models see seqlearn.
Index: pkgsrc/math/py-hmmlearn/Makefile
diff -u /dev/null pkgsrc/math/py-hmmlearn/Makefile:1.1
--- /dev/null   Fri Dec 29 16:43:41 2023
+++ pkgsrc/math/py-hmmlearn/Makefile    Fri Dec 29 16:43:41 2023
@@ -0,0 +1,31 @@
+# $NetBSD: Makefile,v 1.1 2023/12/29 16:43:41 bacon Exp $
+
+DISTNAME=      hmmlearn-0.3.0
+PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
+CATEGORIES=    math python
+MASTER_SITES=  ${MASTER_SITE_PYPI:=h/hmmlearn/}
+
+MAINTAINER=    matthewd%fastmail.us@localhost
+HOMEPAGE=      https://github.com/hmmlearn/hmmlearn
+COMMENT=       Algorithms for inference of Hidden Markov Models
+LICENSE=       modified-bsd
+
+TOOL_DEPENDS+= ${PYPKGPREFIX}-setuptools_scm-[0-9]*:../../devel/py-setuptools_scm
+DEPENDS+=      ${PYPKGPREFIX}-scikit-learn>=0.16:../../math/py-scikit-learn
+DEPENDS+=      ${PYPKGPREFIX}-matplotlib>0:../../graphics/py-matplotlib
+DEPENDS+=      ${PYPKGPREFIX}-scipy>0.19:../../math/py-scipy
+TEST_DEPENDS+= ${PYPKGPREFIX}-test>=5.4.1:../../devel/py-test
+
+USE_LANGUAGES= c c++
+
+# 2023-12-29: Tests currently fail due to known upstream issues
+do-test:
+       # setup.py builds directly to prefix by default, so we need to build
+       # again within the project for pytest to work
+       cd ${WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHONBIN} setup.py develop
+       cd ${WRKSRC} && ${SETENV} ${TEST_ENV} pytest-${PYVERSSUFFIX} --capture=no
+
+.include "../../lang/python/wheel.mk"
+.include "../../devel/py-pybind11/buildlink3.mk"
+.include "../../math/py-numpy/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
Index: pkgsrc/math/py-hmmlearn/PLIST
diff -u /dev/null pkgsrc/math/py-hmmlearn/PLIST:1.1
--- /dev/null   Fri Dec 29 16:43:41 2023
+++ pkgsrc/math/py-hmmlearn/PLIST       Fri Dec 29 16:43:41 2023
@@ -0,0 +1,80 @@
+@comment $NetBSD: PLIST,v 1.1 2023/12/29 16:43:41 bacon Exp $
+${PYSITELIB}/${WHEEL_INFODIR}/AUTHORS.rst
+${PYSITELIB}/${WHEEL_INFODIR}/LICENSE.txt
+${PYSITELIB}/${WHEEL_INFODIR}/METADATA
+${PYSITELIB}/${WHEEL_INFODIR}/RECORD
+${PYSITELIB}/${WHEEL_INFODIR}/WHEEL
+${PYSITELIB}/${WHEEL_INFODIR}/top_level.txt
+${PYSITELIB}/hmmlearn/__init__.py
+${PYSITELIB}/hmmlearn/__init__.pyc
+${PYSITELIB}/hmmlearn/__init__.pyo
+${PYSITELIB}/hmmlearn/_emissions.py
+${PYSITELIB}/hmmlearn/_emissions.pyc
+${PYSITELIB}/hmmlearn/_emissions.pyo
+${PYSITELIB}/hmmlearn/_hmmc.so
+${PYSITELIB}/hmmlearn/_kl_divergence.py
+${PYSITELIB}/hmmlearn/_kl_divergence.pyc
+${PYSITELIB}/hmmlearn/_kl_divergence.pyo
+${PYSITELIB}/hmmlearn/_utils.py
+${PYSITELIB}/hmmlearn/_utils.pyc
+${PYSITELIB}/hmmlearn/_utils.pyo
+${PYSITELIB}/hmmlearn/_version.py
+${PYSITELIB}/hmmlearn/_version.pyc
+${PYSITELIB}/hmmlearn/_version.pyo
+${PYSITELIB}/hmmlearn/base.py
+${PYSITELIB}/hmmlearn/base.pyc
+${PYSITELIB}/hmmlearn/base.pyo
+${PYSITELIB}/hmmlearn/hmm.py
+${PYSITELIB}/hmmlearn/hmm.pyc
+${PYSITELIB}/hmmlearn/hmm.pyo
+${PYSITELIB}/hmmlearn/stats.py
+${PYSITELIB}/hmmlearn/stats.pyc
+${PYSITELIB}/hmmlearn/stats.pyo
+${PYSITELIB}/hmmlearn/tests/__init__.py
+${PYSITELIB}/hmmlearn/tests/__init__.pyc
+${PYSITELIB}/hmmlearn/tests/__init__.pyo
+${PYSITELIB}/hmmlearn/tests/conftest.py
+${PYSITELIB}/hmmlearn/tests/conftest.pyc
+${PYSITELIB}/hmmlearn/tests/conftest.pyo
+${PYSITELIB}/hmmlearn/tests/test_base.py
+${PYSITELIB}/hmmlearn/tests/test_base.pyc
+${PYSITELIB}/hmmlearn/tests/test_base.pyo
+${PYSITELIB}/hmmlearn/tests/test_categorical_hmm.py
+${PYSITELIB}/hmmlearn/tests/test_categorical_hmm.pyc
+${PYSITELIB}/hmmlearn/tests/test_categorical_hmm.pyo
+${PYSITELIB}/hmmlearn/tests/test_gaussian_hmm.py
+${PYSITELIB}/hmmlearn/tests/test_gaussian_hmm.pyc
+${PYSITELIB}/hmmlearn/tests/test_gaussian_hmm.pyo
+${PYSITELIB}/hmmlearn/tests/test_gmm_hmm.py
+${PYSITELIB}/hmmlearn/tests/test_gmm_hmm.pyc
+${PYSITELIB}/hmmlearn/tests/test_gmm_hmm.pyo
+${PYSITELIB}/hmmlearn/tests/test_gmm_hmm_multisequence.py
+${PYSITELIB}/hmmlearn/tests/test_gmm_hmm_multisequence.pyc
+${PYSITELIB}/hmmlearn/tests/test_gmm_hmm_multisequence.pyo
+${PYSITELIB}/hmmlearn/tests/test_gmm_hmm_new.py
+${PYSITELIB}/hmmlearn/tests/test_gmm_hmm_new.pyc
+${PYSITELIB}/hmmlearn/tests/test_gmm_hmm_new.pyo
+${PYSITELIB}/hmmlearn/tests/test_kl_divergence.py
+${PYSITELIB}/hmmlearn/tests/test_kl_divergence.pyc
+${PYSITELIB}/hmmlearn/tests/test_kl_divergence.pyo
+${PYSITELIB}/hmmlearn/tests/test_multinomial_hmm.py
+${PYSITELIB}/hmmlearn/tests/test_multinomial_hmm.pyc
+${PYSITELIB}/hmmlearn/tests/test_multinomial_hmm.pyo
+${PYSITELIB}/hmmlearn/tests/test_poisson_hmm.py
+${PYSITELIB}/hmmlearn/tests/test_poisson_hmm.pyc
+${PYSITELIB}/hmmlearn/tests/test_poisson_hmm.pyo
+${PYSITELIB}/hmmlearn/tests/test_utils.py
+${PYSITELIB}/hmmlearn/tests/test_utils.pyc
+${PYSITELIB}/hmmlearn/tests/test_utils.pyo
+${PYSITELIB}/hmmlearn/tests/test_variational_categorical.py
+${PYSITELIB}/hmmlearn/tests/test_variational_categorical.pyc
+${PYSITELIB}/hmmlearn/tests/test_variational_categorical.pyo
+${PYSITELIB}/hmmlearn/tests/test_variational_gaussian.py
+${PYSITELIB}/hmmlearn/tests/test_variational_gaussian.pyc
+${PYSITELIB}/hmmlearn/tests/test_variational_gaussian.pyo
+${PYSITELIB}/hmmlearn/utils.py
+${PYSITELIB}/hmmlearn/utils.pyc
+${PYSITELIB}/hmmlearn/utils.pyo
+${PYSITELIB}/hmmlearn/vhmm.py
+${PYSITELIB}/hmmlearn/vhmm.pyc
+${PYSITELIB}/hmmlearn/vhmm.pyo
Index: pkgsrc/math/py-hmmlearn/distinfo
diff -u /dev/null pkgsrc/math/py-hmmlearn/distinfo:1.1
--- /dev/null   Fri Dec 29 16:43:41 2023
+++ pkgsrc/math/py-hmmlearn/distinfo    Fri Dec 29 16:43:41 2023
@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.1 2023/12/29 16:43:41 bacon Exp $
+
+BLAKE2s (hmmlearn-0.3.0.tar.gz) = 4cafc68ee2731c6e8a2646afda5dcc49a80c4b3eaa6f5d310d7c5c15b849032f
+SHA512 (hmmlearn-0.3.0.tar.gz) = 2229fad0e1c0c18aae157884b05e4744f661f716d4181eebb15487fa766f21cb6da5553eacce121a5c81b276388b5603ee0781e6503e41c55f9b77829ec4e0ae
+Size (hmmlearn-0.3.0.tar.gz) = 77889 bytes

Prev by Date: CVS commit: pkgsrc/devel/libstash
Next by Date: CVS commit: pkgsrc/doc
Previous by Thread: CVS commit: pkgsrc/devel/libstash
Next by Thread: CVS commit: pkgsrc/doc
Indexes:

Home | Main Index | Thread Index | Old Index