CVS commit: pkgsrc/math/R-RNetCDF

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Tue Jan 23 23:50:03 UTC 2024

Modified Files:
        pkgsrc/math/R-RNetCDF: Makefile distinfo
Removed Files:
        pkgsrc/math/R-RNetCDF/patches: patch-configure

Log Message:
(math/R-RNetCDF) Updated 2.6.2 5o 2.9.1, make test does not pass

Version 2.9-1, 2023-12-30
  * Fix support for parallel I/O with MPICH (and related MPI variants)
  * Fix error handlers to remove potentially insecure format strings

Version 2.8-1, 2023-10-21
  * Fix builds on platforms where share directory is not under $R_HOME
  * Fix UBSAN warning when converting empty NC_CHAR to R string
  * Fix type conversions with oneAPI compiler

Version 2.7-1, 2023-10-02
  * Fix crash when calling nc_free_vlen on vlen with zero-length
  * Support packing and unpacking of vlen
  * Support fill value conversions in non-numeric data types:
    NC_CHAR, NC_STRING, enum, compound, and vlen
  * Improve support for NetCDF parallel I/O in configure script:
    - Specify MPI compiler via argument --with-mpicc
    - Enable MPI tests in R CMD check via argument --with-mpiexec
    - Give warnings if MPI and/or NetCDF parallel I/O not detected
  * Add configure option --with-nc-config-static to allow selection of
    static libraries from nc-config
  * Build Windows package with NetCDF library from RTools4x
    - Adapt to newer RTools by using configure script on Windows
  * Add examples using hierarchical groups to help for grp.inq.nc


To generate a diff of this commit:
cvs rdiff -u -r1.24 -r1.25 pkgsrc/math/R-RNetCDF/Makefile
cvs rdiff -u -r1.7 -r1.8 pkgsrc/math/R-RNetCDF/distinfo
cvs rdiff -u -r1.3 -r0 pkgsrc/math/R-RNetCDF/patches/patch-configure

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-RNetCDF/Makefile
diff -u pkgsrc/math/R-RNetCDF/Makefile:1.24 pkgsrc/math/R-RNetCDF/Makefile:1.25
--- pkgsrc/math/R-RNetCDF/Makefile:1.24 Wed Nov  8 13:20:00 2023
+++ pkgsrc/math/R-RNetCDF/Makefile      Tue Jan 23 23:50:03 2024
@@ -1,15 +1,20 @@
-# $NetBSD: Makefile,v 1.24 2023/11/08 13:20:00 wiz Exp $
+# $NetBSD: Makefile,v 1.25 2024/01/23 23:50:03 mef Exp $
 
 R_PKGNAME=     RNetCDF
-R_PKGVER=      2.6-2
+R_PKGVER=      2.9-1
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
 COMMENT=       Interface to NetCDF datasets
-PKGREVISION=   2
 LICENSE=       gnu-gpl-v2 OR gnu-gpl-v3        # OR file LICENSE
 
 TEST_DEPENDS+= R-bit64-[0-9]*:../../devel/R-bit64
 
+TEST_DEPENDS+= tex-ec-[0-9]*:../../fonts/tex-ec
+TEST_DEPENDS+= tex-inconsolata-[0-9]*:../../fonts/tex-inconsolata
+TEST_DEPENDS+= tex-latex-bin-[0-9]*:../../print/tex-latex-bin
+TEST_DEPENDS+= tex-xkeyval-[0-9]*:../../print/tex-xkeyval
+TEST_DEPENDS+= tex-url-[0-9]*:../../print/tex-url
+
 .include "../../math/R/Makefile.extension"
 .include "../../devel/netcdf/buildlink3.mk"
 .include "../../math/udunits/buildlink3.mk"

Index: pkgsrc/math/R-RNetCDF/distinfo
diff -u pkgsrc/math/R-RNetCDF/distinfo:1.7 pkgsrc/math/R-RNetCDF/distinfo:1.8
--- pkgsrc/math/R-RNetCDF/distinfo:1.7  Sat Jun 17 10:52:59 2023
+++ pkgsrc/math/R-RNetCDF/distinfo      Tue Jan 23 23:50:03 2024
@@ -1,6 +1,5 @@
-$NetBSD: distinfo,v 1.7 2023/06/17 10:52:59 mef Exp $
+$NetBSD: distinfo,v 1.8 2024/01/23 23:50:03 mef Exp $
 
-BLAKE2s (R/RNetCDF_2.6-2.tar.gz) = 37fd0282885e3884caaa11d42a0860bcd2d1aaa10ddbc20b7be2a9bd05bf8243
-SHA512 (R/RNetCDF_2.6-2.tar.gz) = ce79c1ff9948ffca3e8c3b61801a6705377c000b3a0017ae83e29bb87050cc9c73546d06eb310f1d98cf9f32b10509fbfa3d1af3b8ebf2da1820720b32d5109e
-Size (R/RNetCDF_2.6-2.tar.gz) = 144105 bytes
-SHA1 (patch-configure) = b8309c6e26be3039e8d86482979f031887abd123
+BLAKE2s (R/RNetCDF_2.9-1.tar.gz) = e213b0d0911f85acc398a1e1f23c43257d394e08adafda3fbd57643b22b2b2e1
+SHA512 (R/RNetCDF_2.9-1.tar.gz) = b651c5912fbddfe19feff76be1969ebd721f6e768158c1baf13d62e5036963dfb28682db631d8f77314073256b6dd64a9b84f9a3f7e648d8b182a64cd0276286
+Size (R/RNetCDF_2.9-1.tar.gz) = 160520 bytes