CVS commit: pkgsrc/biology/ad2vcf

["Jason Bacon" <bacon%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   bacon
Date:           Sun May 19 12:56:54 UTC 2024

Modified Files:
        pkgsrc/biology/ad2vcf: DESCR Makefile PLIST distinfo

Log Message:
biology/ad2vcf: Update to 0.1.6.19

Use xt_fopen() to support all common compression tools
A few other minor improvements


To generate a diff of this commit:
cvs rdiff -u -r1.2 -r1.3 pkgsrc/biology/ad2vcf/DESCR
cvs rdiff -u -r1.7 -r1.8 pkgsrc/biology/ad2vcf/Makefile
cvs rdiff -u -r1.6 -r1.7 pkgsrc/biology/ad2vcf/PLIST
cvs rdiff -u -r1.8 -r1.9 pkgsrc/biology/ad2vcf/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/ad2vcf/DESCR
diff -u pkgsrc/biology/ad2vcf/DESCR:1.2 pkgsrc/biology/ad2vcf/DESCR:1.3
--- pkgsrc/biology/ad2vcf/DESCR:1.2     Thu Jun 22 11:26:26 2023
+++ pkgsrc/biology/ad2vcf/DESCR Sun May 19 12:56:54 2024
@@ -1,2 +1,2 @@
-ad2vcf extracts allelic depth info from a SAM stream and adds it to a
+ad2vdf extracts allelic depth info from a SAM stream and adds it to a
 corresponding single-sample VCF file.

Index: pkgsrc/biology/ad2vcf/Makefile
diff -u pkgsrc/biology/ad2vcf/Makefile:1.7 pkgsrc/biology/ad2vcf/Makefile:1.8
--- pkgsrc/biology/ad2vcf/Makefile:1.7  Wed Dec 28 15:27:15 2022
+++ pkgsrc/biology/ad2vcf/Makefile      Sun May 19 12:56:54 2024
@@ -1,8 +1,9 @@
-# $NetBSD: Makefile,v 1.7 2022/12/28 15:27:15 bacon Exp $
+# $NetBSD: Makefile,v 1.8 2024/05/19 12:56:54 bacon Exp $
 
-DISTNAME=      ad2vcf-0.1.6
+DISTNAME=      ad2vcf-0.1.6.19
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
+GITHUB_TAG=    f42ae919986d35de2ed6868c22712519d1d0f067
 
 OWNER=         bacon%NetBSD.org@localhost
 HOMEPAGE=      https://github.com/auerlab/ad2vcf

Index: pkgsrc/biology/ad2vcf/PLIST
diff -u pkgsrc/biology/ad2vcf/PLIST:1.6 pkgsrc/biology/ad2vcf/PLIST:1.7
--- pkgsrc/biology/ad2vcf/PLIST:1.6     Sat Jun 11 19:48:32 2022
+++ pkgsrc/biology/ad2vcf/PLIST Sun May 19 12:56:54 2024
@@ -1,3 +1,3 @@
-@comment $NetBSD: PLIST,v 1.6 2022/06/11 19:48:32 bacon Exp $
+@comment $NetBSD: PLIST,v 1.7 2024/05/19 12:56:54 bacon Exp $
 bin/ad2vcf
 man/man1/ad2vcf.1

Index: pkgsrc/biology/ad2vcf/distinfo
diff -u pkgsrc/biology/ad2vcf/distinfo:1.8 pkgsrc/biology/ad2vcf/distinfo:1.9
--- pkgsrc/biology/ad2vcf/distinfo:1.8  Sat Jun 11 19:48:32 2022
+++ pkgsrc/biology/ad2vcf/distinfo      Sun May 19 12:56:54 2024
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.8 2022/06/11 19:48:32 bacon Exp $
+$NetBSD: distinfo,v 1.9 2024/05/19 12:56:54 bacon Exp $
 
-BLAKE2s (ad2vcf-0.1.6.tar.gz) = ffe5aff4c7c67c02c4f73d7ea292369d5e8b84796c9b6c8d7197f83a7fdfac08
-SHA512 (ad2vcf-0.1.6.tar.gz) = 367b0af0c6c890f52c643d97fe72f3f91e37964fa9d58b29ad0a7a80caaaa8962c382e8fa0385a003b2003cbbd9d500aa01c59bce582a2732fcc705f943db1a9
-Size (ad2vcf-0.1.6.tar.gz) = 16293 bytes
+BLAKE2s (ad2vcf-0.1.6.19-f42ae919986d35de2ed6868c22712519d1d0f067.tar.gz) = 289fc86cf8b0b516fd82e3becab08919b48c218e41ed7f2065263f5846864cdd
+SHA512 (ad2vcf-0.1.6.19-f42ae919986d35de2ed6868c22712519d1d0f067.tar.gz) = 
0732ce69ffee689088bd7f3f7ca0bd7c909393021d37a81e69bf3884b1c3ab197d96eaf9aadebb59cc8a93bf6d9376a32c5e023fd06fd9867be0b3fa3248ef67
+Size (ad2vcf-0.1.6.19-f42ae919986d35de2ed6868c22712519d1d0f067.tar.gz) = 16179 bytes