CVS commit: pkgsrc/math/py-pymc3

To: pkgsrc-changes%NetBSD.org@localhost
Subject: CVS commit: pkgsrc/math/py-pymc3
From: "Adam Ciarcinski" <adam%netbsd.org@localhost>
Date: Mon, 5 Aug 2024 19:36:24 +0000

Module Name:    pkgsrc
Committed By:   adam
Date:           Mon Aug  5 19:36:24 UTC 2024

Modified Files:
        pkgsrc/math/py-pymc3: Makefile PLIST distinfo

Log Message:
py-pymc3: updated to 3.11.6

PyMC 3.11.5 (14 March 2022)
Backports
+ The `pm.logp(rv, x)` syntax is now available and recommended to make your model code `v4`-ready. Note that this backport is just an alias and much less capable than what's available with `pymc >=4`
+ The `pm.Distribution(testval=...)` kwarg was deprecated and will be replaced by `pm.Distribution(initval=...)`in `pymc >=4`
+ The `pm.sample(start=...)` kwarg was deprecated and will be replaced by `pm.sample(initvals=...)`in `pymc >=4`
+ `pm.Lognormal` is now available as an alias for `pm.Lognormal`

Bugfixes
+ The upper limit for the SciPy version is `<1.8.0` and will most probably remain for all future `3.x.x` releases. For compatibility with newer SciPy versions please update to `pymc>=4.0.0`.
+ A hotfix is applied on import to remain compatible with NumPy 1.22

PyMC3 3.11.4 (20 August 2021)

New Features
+ Generalized BART, bounded distributions like Binomial and Poisson can now be used as likelihoods
+ `plot_gp_dist` is now available at the package level: `pm.plot_gp_dist`
+ The experimental JAX sampling was removed. It will be included in the upcoming `v4` release
+ `pm.intX` no longer downcasts integers unnecessarily

Maintenance
+ A deprecation warning from the `semver` package we use for checking backend compatibility was dealt with
+ `theano.printing.pydotprint` is now hotfixed upon import
+ Fix bug in the computation of the log pseudolikelihood values (SMC-ABC).
+ Fix `LKJCorr.random` method to work with `pm.sample_prior_predictive`.
+ Enable documentation generation via ReadTheDocs for upcoming v3 releases.
+ Remove `float128` dtype support
+ Use `to_tuple` function in `pm.fast_sample_posterior_predictive` to pass shape assertions


To generate a diff of this commit:
cvs rdiff -u -r1.9 -r1.10 pkgsrc/math/py-pymc3/Makefile
cvs rdiff -u -r1.3 -r1.4 pkgsrc/math/py-pymc3/PLIST
cvs rdiff -u -r1.5 -r1.6 pkgsrc/math/py-pymc3/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/py-pymc3/Makefile
diff -u pkgsrc/math/py-pymc3/Makefile:1.9 pkgsrc/math/py-pymc3/Makefile:1.10
--- pkgsrc/math/py-pymc3/Makefile:1.9   Tue Aug  1 23:20:48 2023
+++ pkgsrc/math/py-pymc3/Makefile       Mon Aug  5 19:36:24 2024
@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.9 2023/08/01 23:20:48 wiz Exp $
+# $NetBSD: Makefile,v 1.10 2024/08/05 19:36:24 adam Exp $
 
-DISTNAME=      pymc3-3.7
+DISTNAME=      pymc3-3.11.6
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
-PKGREVISION=   1
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=p/pymc3/}
 
@@ -11,16 +10,22 @@ HOMEPAGE=   https://github.com/pymc-devs/p
 COMMENT=       Bayesian modeling and probabilistic machine learning
 LICENSE=       apache-2.0
 
-DEPENDS+=      ${PYPKGPREFIX}-Theano>=1.0.0:../../math/py-Theano
-DEPENDS+=      ${PYPKGPREFIX}-h5py>=2.7.0:../../devel/py-h5py
-DEPENDS+=      ${PYPKGPREFIX}-matplotlib>=1.5.0:../../graphics/py-matplotlib
-DEPENDS+=      ${PYPKGPREFIX}-numpy>=1.13.0:../../math/py-numpy
-DEPENDS+=      ${PYPKGPREFIX}-pandas>=0.18.0:../../math/py-pandas
-DEPENDS+=      ${PYPKGPREFIX}-patsy>=0.4.0:../../math/py-patsy
-DEPENDS+=      ${PYPKGPREFIX}-scipy>=0.18.1:../../math/py-scipy
-DEPENDS+=      ${PYPKGPREFIX}-tqdm>=4.8.4:../../misc/py-tqdm
+TOOL_DEPENDS+= ${PYPKGPREFIX}-setuptools-[0-9]*:../../devel/py-setuptools
+TOOL_DEPENDS+= ${PYPKGPREFIX}-wheel-[0-9]*:../../devel/py-wheel
+DEPENDS+=      ${PYPKGPREFIX}-arviz>=0.11.0:../../math/py-arviz
+DEPENDS+=      ${PYPKGPREFIX}-cachetools>=4.2.1:../../devel/py-cachetools
+DEPENDS+=      ${PYPKGPREFIX}-deprecat>0:../../devel/py-deprecat
+DEPENDS+=      ${PYPKGPREFIX}-dill>0:../../textproc/py-dill
+DEPENDS+=      ${PYPKGPREFIX}-fastprogress>=0.2.0:../../misc/py-fastprogress
+DEPENDS+=      ${PYPKGPREFIX}-numpy>=1.15.0:../../math/py-numpy
+DEPENDS+=      ${PYPKGPREFIX}-pandas>=0.24.0:../../math/py-pandas
+DEPENDS+=      ${PYPKGPREFIX}-patsy>=0.5.1:../../math/py-patsy
+DEPENDS+=      ${PYPKGPREFIX}-scipy>=1.7.3:../../math/py-scipy
+DEPENDS+=      ${PYPKGPREFIX}-semver>=2.13.0:../../devel/py-semver
+DEPENDS+=      ${PYPKGPREFIX}-theano-pymc>=1.1.2:../../math/py-theano-pymc
+DEPENDS+=      ${PYPKGPREFIX}-typing-extensions>=3.7.4:../../devel/py-typing-extensions
 
-PYTHON_VERSIONS_INCOMPATIBLE=  27 38
+PYTHON_VERSIONS_INCOMPATIBLE=  27 38 39
 
-.include "../../lang/python/egg.mk"
+.include "../../lang/python/wheel.mk"
 .include "../../mk/bsd.pkg.mk"

Index: pkgsrc/math/py-pymc3/PLIST
diff -u pkgsrc/math/py-pymc3/PLIST:1.3 pkgsrc/math/py-pymc3/PLIST:1.4
--- pkgsrc/math/py-pymc3/PLIST:1.3      Sun Jun 16 19:17:23 2019
+++ pkgsrc/math/py-pymc3/PLIST  Mon Aug  5 19:36:24 2024
@@ -1,9 +1,9 @@
-@comment $NetBSD: PLIST,v 1.3 2019/06/16 19:17:23 adam Exp $
-${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
-${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
-${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
-${PYSITELIB}/${EGG_INFODIR}/requires.txt
-${PYSITELIB}/${EGG_INFODIR}/top_level.txt
+@comment $NetBSD: PLIST,v 1.4 2024/08/05 19:36:24 adam Exp $
+${PYSITELIB}/${WHEEL_INFODIR}/LICENSE
+${PYSITELIB}/${WHEEL_INFODIR}/METADATA
+${PYSITELIB}/${WHEEL_INFODIR}/RECORD
+${PYSITELIB}/${WHEEL_INFODIR}/WHEEL
+${PYSITELIB}/${WHEEL_INFODIR}/top_level.txt
 ${PYSITELIB}/pymc3/__init__.py
 ${PYSITELIB}/pymc3/__init__.pyc
 ${PYSITELIB}/pymc3/__init__.pyo
@@ -13,36 +13,30 @@ ${PYSITELIB}/pymc3/backends/__init__.pyo
 ${PYSITELIB}/pymc3/backends/base.py
 ${PYSITELIB}/pymc3/backends/base.pyc
 ${PYSITELIB}/pymc3/backends/base.pyo
-${PYSITELIB}/pymc3/backends/hdf5.py
-${PYSITELIB}/pymc3/backends/hdf5.pyc
-${PYSITELIB}/pymc3/backends/hdf5.pyo
 ${PYSITELIB}/pymc3/backends/ndarray.py
 ${PYSITELIB}/pymc3/backends/ndarray.pyc
 ${PYSITELIB}/pymc3/backends/ndarray.pyo
 ${PYSITELIB}/pymc3/backends/report.py
 ${PYSITELIB}/pymc3/backends/report.pyc
 ${PYSITELIB}/pymc3/backends/report.pyo
-${PYSITELIB}/pymc3/backends/sqlite.py
-${PYSITELIB}/pymc3/backends/sqlite.pyc
-${PYSITELIB}/pymc3/backends/sqlite.pyo
-${PYSITELIB}/pymc3/backends/text.py
-${PYSITELIB}/pymc3/backends/text.pyc
-${PYSITELIB}/pymc3/backends/text.pyo
 ${PYSITELIB}/pymc3/backends/tracetab.py
 ${PYSITELIB}/pymc3/backends/tracetab.pyc
 ${PYSITELIB}/pymc3/backends/tracetab.pyo
+${PYSITELIB}/pymc3/backports.py
+${PYSITELIB}/pymc3/backports.pyc
+${PYSITELIB}/pymc3/backports.pyo
 ${PYSITELIB}/pymc3/blocking.py
 ${PYSITELIB}/pymc3/blocking.pyc
 ${PYSITELIB}/pymc3/blocking.pyo
 ${PYSITELIB}/pymc3/data.py
 ${PYSITELIB}/pymc3/data.pyc
 ${PYSITELIB}/pymc3/data.pyo
-${PYSITELIB}/pymc3/diagnostics.py
-${PYSITELIB}/pymc3/diagnostics.pyc
-${PYSITELIB}/pymc3/diagnostics.pyo
 ${PYSITELIB}/pymc3/distributions/__init__.py
 ${PYSITELIB}/pymc3/distributions/__init__.pyc
 ${PYSITELIB}/pymc3/distributions/__init__.pyo
+${PYSITELIB}/pymc3/distributions/bart.py
+${PYSITELIB}/pymc3/distributions/bart.pyc
+${PYSITELIB}/pymc3/distributions/bart.pyo
 ${PYSITELIB}/pymc3/distributions/bound.py
 ${PYSITELIB}/pymc3/distributions/bound.pyc
 ${PYSITELIB}/pymc3/distributions/bound.pyo
@@ -64,9 +58,15 @@ ${PYSITELIB}/pymc3/distributions/mixture
 ${PYSITELIB}/pymc3/distributions/multivariate.py
 ${PYSITELIB}/pymc3/distributions/multivariate.pyc
 ${PYSITELIB}/pymc3/distributions/multivariate.pyo
+${PYSITELIB}/pymc3/distributions/posterior_predictive.py
+${PYSITELIB}/pymc3/distributions/posterior_predictive.pyc
+${PYSITELIB}/pymc3/distributions/posterior_predictive.pyo
 ${PYSITELIB}/pymc3/distributions/shape_utils.py
 ${PYSITELIB}/pymc3/distributions/shape_utils.pyc
 ${PYSITELIB}/pymc3/distributions/shape_utils.pyo
+${PYSITELIB}/pymc3/distributions/simulator.py
+${PYSITELIB}/pymc3/distributions/simulator.pyc
+${PYSITELIB}/pymc3/distributions/simulator.pyo
 ${PYSITELIB}/pymc3/distributions/special.py
 ${PYSITELIB}/pymc3/distributions/special.pyc
 ${PYSITELIB}/pymc3/distributions/special.pyo
@@ -76,81 +76,9 @@ ${PYSITELIB}/pymc3/distributions/timeser
 ${PYSITELIB}/pymc3/distributions/transforms.py
 ${PYSITELIB}/pymc3/distributions/transforms.pyc
 ${PYSITELIB}/pymc3/distributions/transforms.pyo
-${PYSITELIB}/pymc3/examples/GHME_2013.py
-${PYSITELIB}/pymc3/examples/GHME_2013.pyc
-${PYSITELIB}/pymc3/examples/GHME_2013.pyo
-${PYSITELIB}/pymc3/examples/LKJ_correlation.py
-${PYSITELIB}/pymc3/examples/LKJ_correlation.pyc
-${PYSITELIB}/pymc3/examples/LKJ_correlation.pyo
-${PYSITELIB}/pymc3/examples/__init__.py
-${PYSITELIB}/pymc3/examples/__init__.pyc
-${PYSITELIB}/pymc3/examples/__init__.pyo
-${PYSITELIB}/pymc3/examples/arbitrary_stochastic.py
-${PYSITELIB}/pymc3/examples/arbitrary_stochastic.pyc
-${PYSITELIB}/pymc3/examples/arbitrary_stochastic.pyo
-${PYSITELIB}/pymc3/examples/arma_example.py
-${PYSITELIB}/pymc3/examples/arma_example.pyc
-${PYSITELIB}/pymc3/examples/arma_example.pyo
-${PYSITELIB}/pymc3/examples/baseball.py
-${PYSITELIB}/pymc3/examples/baseball.pyc
-${PYSITELIB}/pymc3/examples/baseball.pyo
-${PYSITELIB}/pymc3/examples/custom_dists.py
-${PYSITELIB}/pymc3/examples/custom_dists.pyc
-${PYSITELIB}/pymc3/examples/custom_dists.pyo
-${PYSITELIB}/pymc3/examples/data/Guber1999data.txt
-${PYSITELIB}/pymc3/examples/data/HtWt.csv
-${PYSITELIB}/pymc3/examples/data/SP500.csv
-${PYSITELIB}/pymc3/examples/data/babies.csv
-${PYSITELIB}/pymc3/examples/data/cty.dat
-${PYSITELIB}/pymc3/examples/data/efron-morris-75-data.tsv
-${PYSITELIB}/pymc3/examples/data/extrahard_MC_500_5_4.npz.npy
-${PYSITELIB}/pymc3/examples/data/extrahard_MC_500_5_4_reference_classes.npy
-${PYSITELIB}/pymc3/examples/data/mastectomy.csv
-${PYSITELIB}/pymc3/examples/data/merged_ice_core_yearly.csv
-${PYSITELIB}/pymc3/examples/data/milk.csv
-${PYSITELIB}/pymc3/examples/data/monthly_in_situ_co2_mlo.csv
-${PYSITELIB}/pymc3/examples/data/old_faithful.csv
-${PYSITELIB}/pymc3/examples/data/pancreatitis.csv
-${PYSITELIB}/pymc3/examples/data/radon.csv
-${PYSITELIB}/pymc3/examples/data/rugby.csv
-${PYSITELIB}/pymc3/examples/data/srrs2.dat
-${PYSITELIB}/pymc3/examples/data/stock_prices.csv
-${PYSITELIB}/pymc3/examples/data/sunspot.csv
-${PYSITELIB}/pymc3/examples/data/test_scores.csv
-${PYSITELIB}/pymc3/examples/data/wells.dat
-${PYSITELIB}/pymc3/examples/disaster_model.py
-${PYSITELIB}/pymc3/examples/disaster_model.pyc
-${PYSITELIB}/pymc3/examples/disaster_model.pyo
-${PYSITELIB}/pymc3/examples/disaster_model_theano_op.py
-${PYSITELIB}/pymc3/examples/disaster_model_theano_op.pyc
-${PYSITELIB}/pymc3/examples/disaster_model_theano_op.pyo
-${PYSITELIB}/pymc3/examples/factor_potential.py
-${PYSITELIB}/pymc3/examples/factor_potential.pyc
-${PYSITELIB}/pymc3/examples/factor_potential.pyo
-${PYSITELIB}/pymc3/examples/garch_example.py
-${PYSITELIB}/pymc3/examples/garch_example.pyc
-${PYSITELIB}/pymc3/examples/garch_example.pyo
-${PYSITELIB}/pymc3/examples/gelman_bioassay.py
-${PYSITELIB}/pymc3/examples/gelman_bioassay.pyc
-${PYSITELIB}/pymc3/examples/gelman_bioassay.pyo
-${PYSITELIB}/pymc3/examples/gelman_schools.py
-${PYSITELIB}/pymc3/examples/gelman_schools.pyc
-${PYSITELIB}/pymc3/examples/gelman_schools.pyo
-${PYSITELIB}/pymc3/examples/lasso_missing.py
-${PYSITELIB}/pymc3/examples/lasso_missing.pyc
-${PYSITELIB}/pymc3/examples/lasso_missing.pyo
-${PYSITELIB}/pymc3/examples/lightspeed_example.py
-${PYSITELIB}/pymc3/examples/lightspeed_example.pyc
-${PYSITELIB}/pymc3/examples/lightspeed_example.pyo
-${PYSITELIB}/pymc3/examples/rankdata_ordered.py
-${PYSITELIB}/pymc3/examples/rankdata_ordered.pyc
-${PYSITELIB}/pymc3/examples/rankdata_ordered.pyo
-${PYSITELIB}/pymc3/examples/samplers_mvnormal.py
-${PYSITELIB}/pymc3/examples/samplers_mvnormal.pyc
-${PYSITELIB}/pymc3/examples/samplers_mvnormal.pyo
-${PYSITELIB}/pymc3/examples/simpletest.py
-${PYSITELIB}/pymc3/examples/simpletest.pyc
-${PYSITELIB}/pymc3/examples/simpletest.pyo
+${PYSITELIB}/pymc3/distributions/tree.py
+${PYSITELIB}/pymc3/distributions/tree.pyc
+${PYSITELIB}/pymc3/distributions/tree.pyo
 ${PYSITELIB}/pymc3/exceptions.py
 ${PYSITELIB}/pymc3/exceptions.pyc
 ${PYSITELIB}/pymc3/exceptions.pyo
@@ -184,15 +112,21 @@ ${PYSITELIB}/pymc3/gp/util.pyo
 ${PYSITELIB}/pymc3/math.py
 ${PYSITELIB}/pymc3/math.pyc
 ${PYSITELIB}/pymc3/math.pyo
-${PYSITELIB}/pymc3/memoize.py
-${PYSITELIB}/pymc3/memoize.pyc
-${PYSITELIB}/pymc3/memoize.pyo
 ${PYSITELIB}/pymc3/model.py
 ${PYSITELIB}/pymc3/model.pyc
 ${PYSITELIB}/pymc3/model.pyo
 ${PYSITELIB}/pymc3/model_graph.py
 ${PYSITELIB}/pymc3/model_graph.pyc
 ${PYSITELIB}/pymc3/model_graph.pyo
+${PYSITELIB}/pymc3/ode/__init__.py
+${PYSITELIB}/pymc3/ode/__init__.pyc
+${PYSITELIB}/pymc3/ode/__init__.pyo
+${PYSITELIB}/pymc3/ode/ode.py
+${PYSITELIB}/pymc3/ode/ode.pyc
+${PYSITELIB}/pymc3/ode/ode.pyo
+${PYSITELIB}/pymc3/ode/utils.py
+${PYSITELIB}/pymc3/ode/utils.pyc
+${PYSITELIB}/pymc3/ode/utils.pyo
 ${PYSITELIB}/pymc3/parallel_sampling.py
 ${PYSITELIB}/pymc3/parallel_sampling.pyc
 ${PYSITELIB}/pymc3/parallel_sampling.pyo
@@ -205,9 +139,18 @@ ${PYSITELIB}/pymc3/plots/posteriorplot.p
 ${PYSITELIB}/pymc3/sampling.py
 ${PYSITELIB}/pymc3/sampling.pyc
 ${PYSITELIB}/pymc3/sampling.pyo
-${PYSITELIB}/pymc3/stats.py
-${PYSITELIB}/pymc3/stats.pyc
-${PYSITELIB}/pymc3/stats.pyo
+${PYSITELIB}/pymc3/smc/__init__.py
+${PYSITELIB}/pymc3/smc/__init__.pyc
+${PYSITELIB}/pymc3/smc/__init__.pyo
+${PYSITELIB}/pymc3/smc/sample_smc.py
+${PYSITELIB}/pymc3/smc/sample_smc.pyc
+${PYSITELIB}/pymc3/smc/sample_smc.pyo
+${PYSITELIB}/pymc3/smc/smc.py
+${PYSITELIB}/pymc3/smc/smc.pyc
+${PYSITELIB}/pymc3/smc/smc.pyo
+${PYSITELIB}/pymc3/stats/__init__.py
+${PYSITELIB}/pymc3/stats/__init__.pyc
+${PYSITELIB}/pymc3/stats/__init__.pyo
 ${PYSITELIB}/pymc3/step_methods/__init__.py
 ${PYSITELIB}/pymc3/step_methods/__init__.pyc
 ${PYSITELIB}/pymc3/step_methods/__init__.pyo
@@ -241,24 +184,21 @@ ${PYSITELIB}/pymc3/step_methods/hmc/nuts
 ${PYSITELIB}/pymc3/step_methods/hmc/quadpotential.py
 ${PYSITELIB}/pymc3/step_methods/hmc/quadpotential.pyc
 ${PYSITELIB}/pymc3/step_methods/hmc/quadpotential.pyo
-${PYSITELIB}/pymc3/step_methods/hmc/trajectory.py
-${PYSITELIB}/pymc3/step_methods/hmc/trajectory.pyc
-${PYSITELIB}/pymc3/step_methods/hmc/trajectory.pyo
 ${PYSITELIB}/pymc3/step_methods/metropolis.py
 ${PYSITELIB}/pymc3/step_methods/metropolis.pyc
 ${PYSITELIB}/pymc3/step_methods/metropolis.pyo
+${PYSITELIB}/pymc3/step_methods/mlda.py
+${PYSITELIB}/pymc3/step_methods/mlda.pyc
+${PYSITELIB}/pymc3/step_methods/mlda.pyo
+${PYSITELIB}/pymc3/step_methods/pgbart.py
+${PYSITELIB}/pymc3/step_methods/pgbart.pyc
+${PYSITELIB}/pymc3/step_methods/pgbart.pyo
 ${PYSITELIB}/pymc3/step_methods/sgmcmc.py
 ${PYSITELIB}/pymc3/step_methods/sgmcmc.pyc
 ${PYSITELIB}/pymc3/step_methods/sgmcmc.pyo
 ${PYSITELIB}/pymc3/step_methods/slicer.py
 ${PYSITELIB}/pymc3/step_methods/slicer.pyc
 ${PYSITELIB}/pymc3/step_methods/slicer.pyo
-${PYSITELIB}/pymc3/step_methods/smc.py
-${PYSITELIB}/pymc3/step_methods/smc.pyc
-${PYSITELIB}/pymc3/step_methods/smc.pyo
-${PYSITELIB}/pymc3/step_methods/smc_utils.py
-${PYSITELIB}/pymc3/step_methods/smc_utils.pyc
-${PYSITELIB}/pymc3/step_methods/smc_utils.pyo
 ${PYSITELIB}/pymc3/step_methods/step_sizes.py
 ${PYSITELIB}/pymc3/step_methods/step_sizes.pyc
 ${PYSITELIB}/pymc3/step_methods/step_sizes.pyo
@@ -274,6 +214,9 @@ ${PYSITELIB}/pymc3/tests/checks.pyo
 ${PYSITELIB}/pymc3/tests/conftest.py
 ${PYSITELIB}/pymc3/tests/conftest.pyc
 ${PYSITELIB}/pymc3/tests/conftest.pyo
+${PYSITELIB}/pymc3/tests/data/cty.dat
+${PYSITELIB}/pymc3/tests/data/srrs2.dat
+${PYSITELIB}/pymc3/tests/data/wells.dat
 ${PYSITELIB}/pymc3/tests/helpers.py
 ${PYSITELIB}/pymc3/tests/helpers.pyc
 ${PYSITELIB}/pymc3/tests/helpers.pyo
@@ -283,12 +226,18 @@ ${PYSITELIB}/pymc3/tests/models.pyo
 ${PYSITELIB}/pymc3/tests/sampler_fixtures.py
 ${PYSITELIB}/pymc3/tests/sampler_fixtures.pyc
 ${PYSITELIB}/pymc3/tests/sampler_fixtures.pyo
+${PYSITELIB}/pymc3/tests/test_backports.py
+${PYSITELIB}/pymc3/tests/test_backports.pyc
+${PYSITELIB}/pymc3/tests/test_backports.pyo
+${PYSITELIB}/pymc3/tests/test_bart.py
+${PYSITELIB}/pymc3/tests/test_bart.pyc
+${PYSITELIB}/pymc3/tests/test_bart.pyo
+${PYSITELIB}/pymc3/tests/test_coords.py
+${PYSITELIB}/pymc3/tests/test_coords.pyc
+${PYSITELIB}/pymc3/tests/test_coords.pyo
 ${PYSITELIB}/pymc3/tests/test_data_container.py
 ${PYSITELIB}/pymc3/tests/test_data_container.pyc
 ${PYSITELIB}/pymc3/tests/test_data_container.pyo
-${PYSITELIB}/pymc3/tests/test_diagnostics.py
-${PYSITELIB}/pymc3/tests/test_diagnostics.pyc
-${PYSITELIB}/pymc3/tests/test_diagnostics.pyo
 ${PYSITELIB}/pymc3/tests/test_dist_math.py
 ${PYSITELIB}/pymc3/tests/test_dist_math.pyc
 ${PYSITELIB}/pymc3/tests/test_dist_math.pyo
@@ -313,18 +262,12 @@ ${PYSITELIB}/pymc3/tests/test_glm.pyo
 ${PYSITELIB}/pymc3/tests/test_gp.py
 ${PYSITELIB}/pymc3/tests/test_gp.pyc
 ${PYSITELIB}/pymc3/tests/test_gp.pyo
-${PYSITELIB}/pymc3/tests/test_hdf5_backend.py
-${PYSITELIB}/pymc3/tests/test_hdf5_backend.pyc
-${PYSITELIB}/pymc3/tests/test_hdf5_backend.pyo
 ${PYSITELIB}/pymc3/tests/test_hmc.py
 ${PYSITELIB}/pymc3/tests/test_hmc.pyc
 ${PYSITELIB}/pymc3/tests/test_hmc.pyo
 ${PYSITELIB}/pymc3/tests/test_math.py
 ${PYSITELIB}/pymc3/tests/test_math.pyc
 ${PYSITELIB}/pymc3/tests/test_math.pyo
-${PYSITELIB}/pymc3/tests/test_memo.py
-${PYSITELIB}/pymc3/tests/test_memo.pyc
-${PYSITELIB}/pymc3/tests/test_memo.pyo
 ${PYSITELIB}/pymc3/tests/test_minibatches.py
 ${PYSITELIB}/pymc3/tests/test_minibatches.pyc
 ${PYSITELIB}/pymc3/tests/test_minibatches.pyo
@@ -358,15 +301,24 @@ ${PYSITELIB}/pymc3/tests/test_models_uti
 ${PYSITELIB}/pymc3/tests/test_ndarray_backend.py
 ${PYSITELIB}/pymc3/tests/test_ndarray_backend.pyc
 ${PYSITELIB}/pymc3/tests/test_ndarray_backend.pyo
+${PYSITELIB}/pymc3/tests/test_ode.py
+${PYSITELIB}/pymc3/tests/test_ode.pyc
+${PYSITELIB}/pymc3/tests/test_ode.pyo
 ${PYSITELIB}/pymc3/tests/test_parallel_sampling.py
 ${PYSITELIB}/pymc3/tests/test_parallel_sampling.pyc
 ${PYSITELIB}/pymc3/tests/test_parallel_sampling.pyo
 ${PYSITELIB}/pymc3/tests/test_pickling.py
 ${PYSITELIB}/pymc3/tests/test_pickling.pyc
 ${PYSITELIB}/pymc3/tests/test_pickling.pyo
+${PYSITELIB}/pymc3/tests/test_plots.py
+${PYSITELIB}/pymc3/tests/test_plots.pyc
+${PYSITELIB}/pymc3/tests/test_plots.pyo
 ${PYSITELIB}/pymc3/tests/test_posdef_sym.py
 ${PYSITELIB}/pymc3/tests/test_posdef_sym.pyc
 ${PYSITELIB}/pymc3/tests/test_posdef_sym.pyo
+${PYSITELIB}/pymc3/tests/test_posterior_predictive.py
+${PYSITELIB}/pymc3/tests/test_posterior_predictive.pyc
+${PYSITELIB}/pymc3/tests/test_posterior_predictive.pyo
 ${PYSITELIB}/pymc3/tests/test_posteriors.py
 ${PYSITELIB}/pymc3/tests/test_posteriors.pyc
 ${PYSITELIB}/pymc3/tests/test_posteriors.pyo
@@ -394,21 +346,12 @@ ${PYSITELIB}/pymc3/tests/test_smc.pyo
 ${PYSITELIB}/pymc3/tests/test_special_functions.py
 ${PYSITELIB}/pymc3/tests/test_special_functions.pyc
 ${PYSITELIB}/pymc3/tests/test_special_functions.pyo
-${PYSITELIB}/pymc3/tests/test_sqlite_backend.py
-${PYSITELIB}/pymc3/tests/test_sqlite_backend.pyc
-${PYSITELIB}/pymc3/tests/test_sqlite_backend.pyo
 ${PYSITELIB}/pymc3/tests/test_starting.py
 ${PYSITELIB}/pymc3/tests/test_starting.pyc
 ${PYSITELIB}/pymc3/tests/test_starting.pyo
-${PYSITELIB}/pymc3/tests/test_stats.py
-${PYSITELIB}/pymc3/tests/test_stats.pyc
-${PYSITELIB}/pymc3/tests/test_stats.pyo
 ${PYSITELIB}/pymc3/tests/test_step.py
 ${PYSITELIB}/pymc3/tests/test_step.pyc
 ${PYSITELIB}/pymc3/tests/test_step.pyo
-${PYSITELIB}/pymc3/tests/test_text_backend.py
-${PYSITELIB}/pymc3/tests/test_text_backend.pyc
-${PYSITELIB}/pymc3/tests/test_text_backend.pyo
 ${PYSITELIB}/pymc3/tests/test_theanof.py
 ${PYSITELIB}/pymc3/tests/test_theanof.pyc
 ${PYSITELIB}/pymc3/tests/test_theanof.pyo

Index: pkgsrc/math/py-pymc3/distinfo
diff -u pkgsrc/math/py-pymc3/distinfo:1.5 pkgsrc/math/py-pymc3/distinfo:1.6
--- pkgsrc/math/py-pymc3/distinfo:1.5   Tue Oct 26 10:56:04 2021
+++ pkgsrc/math/py-pymc3/distinfo       Mon Aug  5 19:36:24 2024
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.5 2021/10/26 10:56:04 nia Exp $
+$NetBSD: distinfo,v 1.6 2024/08/05 19:36:24 adam Exp $
 
-BLAKE2s (pymc3-3.7.tar.gz) = 84cee7a643956208dde241558e48c5e4f9ee97bdc39d050c55c7c63241bfa4d9
-SHA512 (pymc3-3.7.tar.gz) = 7efa3a86b7c9b34a9574faedb26396431168a63ba2c03e4680537ce5798105d6c3c273954f5c54de324015123fc0afa3b9ba8f88617a4e1f17924f66b5430a05
-Size (pymc3-3.7.tar.gz) = 30780326 bytes
+BLAKE2s (pymc3-3.11.6.tar.gz) = 320462a44b2519a747604f124bc940a0aa506cfa6b08e2f858cfcf8e83639ddf
+SHA512 (pymc3-3.11.6.tar.gz) = f601fa9995298ea2e22c79ebfba4aa1d1619b596a7af0b93b5743f4e4b6f3f57a1d5b8396004beaabd631347e648cb964e9293f1aeeca2e3a016ef7ff9aed27a
+Size (pymc3-3.11.6.tar.gz) = 804470 bytes

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