CVS commit: pkgsrc/math/R-broom

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Wed Oct 30 21:07:24 UTC 2024

Modified Files:
        pkgsrc/math/R-broom: Makefile distinfo

Log Message:
(math/R-broom) Updated 1.0.5 to 1.0.7

# broom 1.0.7

* Corrected `nobs` entries in `glance.coxph()` output: the package used to
  return `length(object$linear.predictors)` (equal to `n` rather than `nevent`)
  and now uses survival's method (#1224).

* Corrected confidence interval values in `tidy.boot()` and addressed errors
  when bootstrapping confidence intervals for multiple terms (#1212).

* Reverted deprecation of tidiers for objects from the margins package
  now that the package is back on CRAN (#1220).

* Addressed failure in `tidy.anova()` ahead of upcoming car
  release (#1215).

* Clarified documentation for a number of cases where dots were
  documented as unused but actually passed to internal functions
  (#1214).

* Addressed error in `augment.betareg()` and `augment.betamfx()`
  with `data = NULL` and non-null `newdata` (#1216, #1218).

* `glance.lm()` now returns non-`NA` values for `statistic`, `p.value`, and `df`
  for models fitted with a single predictor and no intercept (@jrob95, #1209).

# broom 1.0.6

## New Features

* Added support for `conf.level` in `augment.lm()` (#1191 by `@zietzm`).

* Added support for columns `adj.r.squared` and `npar` in `glance()`
  method for objects outputted from `mgcv::gam()` (#1172).

## Deprecations

* Soft-deprecated tidiers for margins objects, as the package was
  archived from CRAN in April 2024. In the case that the package is
  back on CRAN before the next package release, broom will once again
  Suggest and test support for the package (#1200).

* Moved forward with deprecation of tidiers for objects from the sp
  package. See resources linked in
  [tidymodels/broom#1142](https://github.com/tidymodels/broom/issues/1142)
  for more information on migration from retiring spatial packages.

## Bug Fixes

* While this broom release contains no changes to the `tidy.survfit()`
  method for objects from the survival package, the package has bumped
  the minimum required version for survival. Before survival 3.6-4,
  `tidy.survfit()` propagated "inconsistent" `n.censor` values from
  survival for multi-state models (#1195).

* Corrected confidence interval values for precision components in
  `tidy.betareg()` output (#1169).

* Fixed bug in tidier for `car::linearHypothesis()` output with long
  formulas (#1171).

* Corrected coefficient values in `tidy.varest()` output (#1174).


To generate a diff of this commit:
cvs rdiff -u -r1.4 -r1.5 pkgsrc/math/R-broom/Makefile
cvs rdiff -u -r1.6 -r1.7 pkgsrc/math/R-broom/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-broom/Makefile
diff -u pkgsrc/math/R-broom/Makefile:1.4 pkgsrc/math/R-broom/Makefile:1.5
--- pkgsrc/math/R-broom/Makefile:1.4    Tue Jun 13 14:03:02 2023
+++ pkgsrc/math/R-broom/Makefile        Wed Oct 30 21:07:24 2024
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.4 2023/06/13 14:03:02 mef Exp $
+# $NetBSD: Makefile,v 1.5 2024/10/30 21:07:24 mef Exp $
 
 R_PKGNAME=     broom
-R_PKGVER=      1.0.5
+R_PKGVER=      1.0.7
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
 COMMENT=       Convert Statistical Objects into Tidy Tibbles
@@ -19,6 +19,16 @@ DEPENDS+=    R-tidyr>=1.1.3:../../math/R-ti
 DEPENDS+=      R-stringr>=1.4.0:../../textproc/R-stringr
 DEPENDS+=      R-ggplot2-[0-9]*:../../graphics/R-ggplot2
 
+# Packages suggested but not available:
+#   'AER', 'AUC', 'betareg', 'biglm', 'binGroup', 'btergm', 'caret',
+#   'cmprsk', 'drc', 'emmeans', 'epiR', 'ergm', 'fixest', 'gam', 'gee',
+#   'geepack', 'glmnet', 'glmnetUtils', 'gmm', 'irlba', 'joineRML',
+#   'Kendall', 'ks', 'Lahman', 'lavaan', 'leaps', 'lfe', 'lm.beta',
+#   'lmodel2', 'lsmeans', 'maps', 'margins', 'mclust', 'mediation',
+#   'metafor', 'mfx', 'mlogit', 'modeldata', 'modeltests', 'muhaz',
+#   'multcomp', 'network', 'orcutt', 'ordinal', 'plm', 'poLCA', 'robust',
+#   'rsample', 'spdep', 'spatialreg', 'speedglm', 'systemfit', 'vars'
+
 #EST_DEPENDS+= R-AER-[0-9]*:
 TEST_DEPENDS+= R-akima-[0-9]*:../../math/R-akima
 #EST_DEPENDS+= R-AUC-[0-9]*:

Index: pkgsrc/math/R-broom/distinfo
diff -u pkgsrc/math/R-broom/distinfo:1.6 pkgsrc/math/R-broom/distinfo:1.7
--- pkgsrc/math/R-broom/distinfo:1.6    Tue Jun 13 14:03:02 2023
+++ pkgsrc/math/R-broom/distinfo        Wed Oct 30 21:07:24 2024
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.6 2023/06/13 14:03:02 mef Exp $
+$NetBSD: distinfo,v 1.7 2024/10/30 21:07:24 mef Exp $
 
-BLAKE2s (R/broom_1.0.5.tar.gz) = 62cf3eb0d036db6bd4d9e62fd8c1338b0ac942c51fea5df4b701fad12f550eaf
-SHA512 (R/broom_1.0.5.tar.gz) = cbff4cbb207647b4411a675118eae60d5c1c95c5c97dbfd7f3fd8b5957c2c71d912cdc262a21df908bbe2e3283884b029dbe200ba402045186d90caff5fb498c
-Size (R/broom_1.0.5.tar.gz) = 641849 bytes
+BLAKE2s (R/broom_1.0.7.tar.gz) = 8b2e2fd52904e32a19912534b5c4e82e3c713482920817b8ace148cc4ad3737d
+SHA512 (R/broom_1.0.7.tar.gz) = 2587813660142fb36d8855188da4a248fe33e1d1b0f7ea67e9ebbef5ff4bfb6007e7ee8a2ca151ffe1fec4354d5340ecfd19c181ad9ea63571ba6b68b97a7bdf
+Size (R/broom_1.0.7.tar.gz) = 644384 bytes