CVS commit: pkgsrc/math/R-car

["Makoto Fujiwara" <mef%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   mef
Date:           Wed Oct 30 22:12:08 UTC 2024

Modified Files:
        pkgsrc/math/R-car: Makefile distinfo

Log Message:
(math/R-car) Updated 3.1.2 to 3.1.3

Changes to Version 3.1-3

  o Clarify docs to explain that ... argument is not passed to .vcov
  when it's a function in calls to Anova(), confidence Elliipse(),
  Confint(), deltaMethod(), linearHypothesis(), and S() (suggestion of
  Joe Ritter).

  o make dataEllipse() generic and add default and formula methods
  (with help of Michael Friendly).

  o linearHypothesis() no longer issues a warning when a hypothesis
  matrix is supplied for coefficients whose names include arithmetic
  operators (following report by Robert Baer about unnecessary
  warnings printed by Anova(), which calls linearHypothesis()).

  o deltaMethod() now allows models with aliased coefficients when
  argument singular.ok=TRUE.

  o Anova() method for "coxph" objects no longer computes incorrect LR
  tests for models using the tt argument; in this case, Wald tests are
  substituted (following bug report by Ken Beath).

  o crPlot(), crPlots(), crPlot3d(), and avPlot3d() now invisibly
  return coordinates rather than NULL, as avPlot() and avPlots()
  already did (following query by Jeff Reichman).

  o poTest() supports "polr" models with weights (suggestion of Ken
  Beath).

  o Anova() now supports "clm" and "clmm" objects created by functions
  in the ordinal package (after report by Karl Ove Hufthammer that the
  default method doesn't work).

  o Anova.default() does more checking for potential problems (after
  report by Karl Ove Hufthammer).

  o Anova.lme() correctly handles models with contrasts different from
  the default contr.treatment (fixing a bug reported by Ben Bolker).

  o Small changes to docs.


To generate a diff of this commit:
cvs rdiff -u -r1.13 -r1.14 pkgsrc/math/R-car/Makefile
cvs rdiff -u -r1.14 -r1.15 pkgsrc/math/R-car/distinfo

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/R-car/Makefile
diff -u pkgsrc/math/R-car/Makefile:1.13 pkgsrc/math/R-car/Makefile:1.14
--- pkgsrc/math/R-car/Makefile:1.13     Tue Jun 13 14:13:53 2023
+++ pkgsrc/math/R-car/Makefile  Wed Oct 30 22:12:08 2024
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.13 2023/06/13 14:13:53 mef Exp $
+# $NetBSD: Makefile,v 1.14 2024/10/30 22:12:08 mef Exp $
 
 R_PKGNAME=     car
-R_PKGVER=      3.1-2
+R_PKGVER=      3.1-3
 
 MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
 COMMENT=       Companion to 'Applied Regression'
@@ -10,15 +10,18 @@ LICENSE=    gnu-gpl-v2 OR gnu-gpl-v3
 DEPENDS+=      R-maptools>=0.9.5:../../geography/R-maptools
 DEPENDS+=      R-abind>=1.4.5:../../math/R-abind
 DEPENDS+=      R-carData>=3.0.0:../../math/R-carData
+DEPENDS+=      R-Formula-[0-9]*:../../math/R-Formula
 DEPENDS+=      R-lme4>=1.1.21:../../math/R-lme4
 DEPENDS+=      R-pbkrtest>=0.4.4:../../math/R-pbkrtest
 DEPENDS+=      R-quantreg>=5.42.1:../../math/R-quantreg
 
 # Packages suggested but not available:
-#   'alr4', 'coxme', 'leaps'
+#  'alr4', 'coxme', 'leaps', 'ordinal', 'plotrix'
+
 TEST_DEPENDS+= R-lmtest-[0-9]*:../../math/R-lmtest
 TEST_DEPENDS+= R-effects-[0-9]*:../../graphics/R-effects
 TEST_DEPENDS+= R-knitr-[0-9]*:../../print/R-knitr
+TEST_DEPENDS+= R-mvtnorm-[0-9]*:../../math/R-mvtnorm
 TEST_DEPENDS+= R-rgl-[0-9]*:../../graphics/R-rgl
 TEST_DEPENDS+= R-rio>=0.5.16:../../devel/R-rio
 TEST_DEPENDS+= R-sandwich-[0-9]*:../../math/R-sandwich

Index: pkgsrc/math/R-car/distinfo
diff -u pkgsrc/math/R-car/distinfo:1.14 pkgsrc/math/R-car/distinfo:1.15
--- pkgsrc/math/R-car/distinfo:1.14     Tue Jun 13 14:13:53 2023
+++ pkgsrc/math/R-car/distinfo  Wed Oct 30 22:12:08 2024
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.14 2023/06/13 14:13:53 mef Exp $
+$NetBSD: distinfo,v 1.15 2024/10/30 22:12:08 mef Exp $
 
-BLAKE2s (R/car_3.1-2.tar.gz) = d3f24b072868a371c1b5a4786e70803ef9db9934790128b7d75341daa3202145
-SHA512 (R/car_3.1-2.tar.gz) = 1a080006b931f4700825bb907be0496a774046a4245b5da49aaf7818c7502945c56e90f83c9cd492c8647e8139e6476117fc25e41413375e5983419f20962e23
-Size (R/car_3.1-2.tar.gz) = 579829 bytes
+BLAKE2s (R/car_3.1-3.tar.gz) = 913c7b970657e17d577666b8e2e9ba7012fa0ba47f719dc599f3947e42c07689
+SHA512 (R/car_3.1-3.tar.gz) = 069e025f827037f0657e9b7db5a943f015040962099c5bb64b8ee3a1a395f812b6cb75008e22db93908dc80f45576a3d6dcae5939a7e7e3c22aa4af6973b5df3
+Size (R/car_3.1-3.tar.gz) = 384407 bytes