On 06/28/17 16:10, Brook Milligan wrote:
Hi Jason,On Jun 28, 2017, at 1:15 PM, Jason Bacon <bacon4000%gmail.com@localhost> wrote: Not a high priority, but math/R is failing on FreeBSD: configure:25497: clang -o conftest -O2 -pthread -I/home/bacon/Pkgsrc/pkg/include -I/home/bacon/Pkgsrc/pkg/include/ncurses -I/home/bacon/Pkgsrc/pkg/include/libdr m -I/home/bacon/Pkgsrc/pkg/include/freetype2 -I/usr/include -D_THREAD_SAFE -I/ho me/bacon/Pkgsrc/pkg/include -I/home/bacon/Pkgsrc/pkg/include/ncurses -I/home/bac on/Pkgsrc/pkg/include/libdrm -I/home/bacon/Pkgsrc/pkg/include/freetype2 -I/usr/i nclude -D_THREAD_SAFE -L/home/bacon/Pkgsrc/pkg/lib -Wl,-R/home/bacon/Pkgsrc/pkg/ lib -L/usr/lib -Wl,-R/usr/lib -pthread conftest.c -lm -lpthread -lrt -L/usr/hom e/bacon/Pkgsrc/pkg/gcc48/lib/gcc/x86_64-unknown-freebsd11/4.8.5 -L/usr/home/baco n/Pkgsrc/pkg/gcc48/lib/gcc -L/usr/home/bacon/Pkgsrc/pkg/gcc48/lib -Wl,-R/home/ba con/Pkgsrc/pkg/gcc48/x86_64-unknown-freebsd11/lib/. -Wl,-R/home/bacon/Pkgsrc/pkg /gcc48/lib/. -lgfortran -lm -lquadmath -lpthread >&5 /usr/bin/ld: cannot find -lgfortran clang: error: linker command failed with exit code 1 (use -v to see invocation)Is libgfortran.* in the R/work/.buildlink directory? I believe that is what really counts. Is the right buildlink magic being used? Cheers, Brook
The libs are there:FreeBSD unixdev.ceas bacon ~/Pkgsrc/pkgsrc/math/R 412: ls -l work/.buildlink/gcc48/lib/libgfortran.* lrwxr-xr-x 1 bacon bacon 46 Jun 28 14:02 work/.buildlink/gcc48/lib/libgfortran.a@ -> /home/bacon/Pkgsrc/pkg/gcc48/lib/libgfortran.a -rw-r--r-- 1 bacon bacon 1059 Jun 28 14:02 work/.buildlink/gcc48/lib/libgfortran.la lrwxr-xr-x 1 bacon bacon 47 Jun 28 14:02 work/.buildlink/gcc48/lib/libgfortran.so@ -> /home/bacon/Pkgsrc/pkg/gcc48/lib/libgfortran.so lrwxr-xr-x 1 bacon bacon 49 Jun 28 14:02 work/.buildlink/gcc48/lib/libgfortran.so.3@ -> /home/bacon/Pkgsrc/pkg/gcc48/lib/libgfortran.so.3 lrwxr-xr-x 1 bacon bacon 49 Jun 28 14:02 work/.buildlink/gcc48/lib/libgfortran.spec@ -> /home/bacon/Pkgsrc/pkg/gcc48/lib/libgfortran.spec
I'm not sure what you mean about the buildlink magic, but the GCC dep comes from USE_LANGUAGES=fortran.
I noticed that R did not build in my pbulk runs on Darwin 15 or 16 either. They use clang as a base compiler, like FreeBSD.
Has anyone successfully built R on El Capitan or Sierra?
Thanks,
JB
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