Re: QA error in python package

[Jason Bacon <outpaddling%yahoo.com@localhost>]

On 11/5/18 2:31 PM, Jason Bacon wrote:
> Does this sort of error look familiar to anyone?
>
> The package is wip/py-pysam.  There's a "log" file containing full 
> output from the build.
>
> I'll keep looking, but thought I'd post for posterity since I couldn't 
> find anything on the web.
>
> Thanks,
>
>     Jason
>
> ERROR: lib/python2.7/site-packages/pysam/libcutils.so: missing 
> library: libcbcftools.so
> ERROR: lib/python2.7/site-packages/pysam/libcutils.so: missing 
> library: libcsamtools.so
> ERROR: lib/python2.7/site-packages/pysam/libcutils.so: missing 
> library: libchtslib.so
> ERROR: lib/python2.7/site-packages/pysam/libcvcf.so: missing library: 
> libcutils.so
> ERROR: lib/python2.7/site-packages/pysam/libcvcf.so: missing library: 
> libchtslib.so
> *** Error code 1
>
> Stop.
> bmake.bin[1]: stopped in /usr/pkgsrc/wip/py-pysam
> *** Error code 1
>
> Stop.
> bmake.bin: stopped in /usr/pkgsrc/wip/py-pysam

Well, I worked around it for now with the following hack:

# FIXME: Why is this necessary?
LDFLAGS+=    -L${DESTDIR}${PREFIX}/${PYSITELIB}/pysam
LDFLAGS+=    ${COMPILER_RPATH_FLAG}${PREFIX}/${PYSITELIB}/pysam

Still hoping to clean it up at some point...