pkg/47746: math/octave 3.6.4 and glpk 4.49

[davshao%gmail.com@localhost]

>Number:         47746
>Category:       pkg
>Synopsis:       math/octave 3.6.4 and glpk 4.49
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    pkg-manager
>State:          open
>Class:          sw-bug
>Submitter-Id:   net
>Arrival-Date:   Wed Apr 17 14:40:00 +0000 2013
>Originator:     David Shao
>Release:        NetBSD 6.99.19 (GENERIC) amd64
>Organization:
>Environment:
NetBSD 6.99.19 (GENERIC) amd64
>Description:
On at least NetBSD 6.99.19 (GENERIC) amd64 and DragonFly 3.5-DEVELOPMENT 
x86_64, using current pkgsrc, updating to math/glpk 4.49 breaks the build of 
math/octave 3.6.4.

WARNING: [subst.mk:fix-info] Ignoring non-existent file "./doc/liboctave/*.txi".
...
checking for fftwf_plan_dft_1d in -lfftw3f... no
configure: WARNING: FFTW3F library not found.  The slower FFTPACK library will 
be used instead.
checking glpk/glpk.h usability... no
checking glpk/glpk.h presence... no
checking for glpk/glpk.h... no
checking glpk.h usability... yes
checking glpk.h presence... yes
checking for glpk.h... yes
checking for _glp_lpx_simplex in -lglpk... yes
...
checking for sqr1up in -lqrupdate... no
configure: WARNING: qrupdate not found.  The QR & Cholesky updating functions 
will be slow.
...
checking for amd.h... no
configure: WARNING: AMD library not found.  This will result in some lack of 
functionality for sparse matrices.
...
checking for camd.h... no
configure: WARNING: CAMD library not found.  This will result in some lack of 
functionality for sparse matrices.
...
checking for colamd.h... no
configure: WARNING: COLAMD library not found.  This will result in some lack of 
functionality for sparse matrices.
...
checking for dseupd in -larpack... no
configure: WARNING: ARPACK not found.  The eigs function will be disabled.
...
checking for bison... /usr/pkg/bin/bison -y
configure: WARNING: I didn't find bison, but it's only a problem if you need to 
reconstruct parse.cc
...
libtool: link: c++ -shared  -fPIC -DPIC  
DLD-FUNCTIONS/.libs/DLD_FUNCTIONS___fltk_uigetfile___la-__fltk_uigetfile__.o   
-Wl,-rpath,/usr/pkgsrc/math/octave/work/octave-3.6.4/src/.libs 
-Wl,-rpath,/usr/pkgsrc/math/octave/work/octave-3.6.4/liboctave/.libs 
-Wl,-rpath,/usr/pkgsrc/math/octave/work/.buildlink/lib 
-Wl,-rpath,/usr/pkgsrc/math/octave/work/octave-3.6.4/libcruft/.libs 
-Wl,-rpath,/usr/pkg/lib/octave/3.6.4 
-Wl,-rpath,/usr/pkgsrc/math/octave/work/.buildlink/lib 
-L/usr/pkgsrc/math/octave/work/octave-3.6.4/liboctave/.libs 
-L/usr/pkgsrc/math/octave/work/octave-3.6.4/libcruft/.libs 
-L/usr/pkgsrc/math/octave/work/.buildlink/lib -L./.libs -loctinterp -lhdf5 -lz 
-lX11 -lxcb -lXau -lXdmcp -L../liboctave/.libs -loctave -lfftw3 -lreadline 
-ltermcap -lcurses -lpcre -L../libcruft/.libs -lcruft -llapack -lblas -lf2c -lm 
 -O2 -O2 -pthread -O2 -Wl,-R/usr/pkg/lib   -pthread -Wl,-soname 
-Wl,__fltk_uigetfile__.so -o DLD-FUNCTIONS/.libs/__fltk_uigetfile__.so
libtool: link: ar cru DLD-FUNCTIONS/.libs/__fltk_uigetfile__.a  
DLD-FUNCTIONS/DLD_FUNCTIONS___fltk_uigetfile___la-__fltk_uigetfile__.o
libtool: link: ranlib DLD-FUNCTIONS/.libs/__fltk_uigetfile__.a
libtool: link: ( cd "DLD-FUNCTIONS/.libs" && rm -f "__fltk_uigetfile__.la" && 
ln -s "../__fltk_uigetfile__.la" "__fltk_uigetfile__.la" )
/bin/sh ../libtool  --tag=CXX   --mode=compile c++ -DHAVE_CONFIG_H -I. -I..  
-I../libgnu -I../libgnu -I../libcruft/misc -I../liboctave -I../liboctave -I. 
-I. -I/usr/pkg/include -I/usr/include -I/usr/include/krb5  -I/usr/pkg/include 
-I/usr/include -I/usr/include/krb5 -O2 -g -I/usr/pkg/include -I/usr/include 
-I/usr/include/krb5  -DHAVE_CONFIG_H -I/usr/pkg/include -Wall -W -Wshadow 
-Wold-style-cast -Wformat -Wpointer-arith -Wwrite-strings -Wcast-align 
-Wcast-qual -O2 -g -I/usr/pkg/include -I/usr/include -I/usr/include/krb5 
-pthread -O2 -g -I/usr/pkg/include -I/usr/include -I/usr/include/krb5 -MT 
DLD-FUNCTIONS/DLD_FUNCTIONS___glpk___la-__glpk__.lo -MD -MP -MF 
DLD-FUNCTIONS/.deps/DLD_FUNCTIONS___glpk___la-__glpk__.Tpo -c -o 
DLD-FUNCTIONS/DLD_FUNCTIONS___glpk___la-__glpk__.lo `test -f 
'DLD-FUNCTIONS/__glpk__.cc' || echo './'`DLD-FUNCTIONS/__glpk__.cc
libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I.. -I../libgnu -I../libcruft/misc 
-I../liboctave -I/usr/pkgsrc/math/octave/work/.buildlink/include 
-I/usr/include/krb5 -O2 -g -Wall -W -Wshadow -Wold-style-cast -Wformat 
-Wpointer-arith -Wwrite-strings -Wcast-align -Wcast-qual -O2 -g -pthread -O2 -g 
-MT DLD-FUNCTIONS/DLD_FUNCTIONS___glpk___la-__glpk__.lo -MD -MP -MF 
DLD-FUNCTIONS/.deps/DLD_FUNCTIONS___glpk___la-__glpk__.Tpo -c 
DLD-FUNCTIONS/__glpk__.cc  -fPIC -DPIC -o 
DLD-FUNCTIONS/.libs/DLD_FUNCTIONS___glpk___la-__glpk__.o
DLD-FUNCTIONS/__glpk__.cc:96:3: error: 'LPX_K_MSGLEV' was not declared in this 
scope
DLD-FUNCTIONS/__glpk__.cc:97:3: error: 'LPX_K_SCALE' was not declared in this 
scope
DLD-FUNCTIONS/__glpk__.cc:98:3: error: 'LPX_K_DUAL' was not declared in this 
scope
DLD-FUNCTIONS/__glpk__.cc:99:3: error: 'LPX_K_PRICE' was not declared in this 
scope
DLD-FUNCTIONS/__glpk__.cc:100:3: error: 'LPX_K_ROUND' was not declared in this 
scope
DLD-FUNCTIONS/__glpk__.cc:101:3: error: 'LPX_K_ITLIM' was not declared in this 
scope
DLD-FUNCTIONS/__glpk__.cc:102:3: error: 'LPX_K_ITCNT' was not declared in this 
scope
DLD-FUNCTIONS/__glpk__.cc:103:3: error: 'LPX_K_OUTFRQ' was not declared in this 
scope
DLD-FUNCTIONS/__glpk__.cc:104:3: error: 'LPX_K_MPSINFO' was not declared in 
this scope
DLD-FUNCTIONS/__glpk__.cc:105:3: error: 'LPX_K_MPSOBJ' was not declared in this 
scope
...
>How-To-Repeat:

>Fix: