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pkg/49817: math/py-rpy 2.3.0 doesn't build on amd64 7.99.4
>Number: 49817
>Category: pkg
>Synopsis: math/py-rpy 2.3.0 doesn't build on amd64 7.99.4
>Confidential: no
>Severity: non-critical
>Priority: medium
>Responsible: pkg-manager
>State: open
>Class: sw-bug
>Submitter-Id: net
>Arrival-Date: Mon Apr 06 11:35:00 +0000 2015
>Originator: Alexxander Nasonov
>Release: amd64 7.99.4, pkgsrc-current
>Organization:
>Environment:
NetBSD nebeda.localdomain 7.99.4 NetBSD 7.99.4 (GENERIC) #0: Fri Feb 13 15:49:35 GMT 2015 root@nebeda.localdomain:/home/alnsn/netbsd-current/src/sys/arch/amd64/compile/obj/GENERIC amd64
>Description:
It fails with
ValueError: Invalid substring
-fopenmp
>How-To-Repeat:
$ cd math/py-rpy
$ make
...
running build_ext
Traceback (most recent call last):
File "setup.py", line 463, in <module>
'rpy2': ['doc/source/rpy2_logo.png', ]}
File "/usr/pkg/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/usr/pkg/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/pkg/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/pkg/lib/python2.7/distutils/command/build.py", line 127, in run
self.run_command(cmd_name)
File "/usr/pkg/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/pkg/lib/python2.7/distutils/dist.py", line 971, in run_command
cmd_obj.ensure_finalized()
File "/usr/pkg/lib/python2.7/distutils/cmd.py", line 109, in ensure_finalized
self.finalize_options()
File "setup.py", line 163, in finalize_options
config += get_rconfig(r_home, about)
File "setup.py", line 333, in get_rconfig
rc = RConfig.from_string(rconfig, allow_empty = allow_empty)
File "setup.py", line 293, in from_string
+ '\nin string\n' + string)
ValueError: Invalid substring
-fopenmp
in string
-Wl,-export-dynamic -fopenmp -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -Wl,-R/usr/pkg/lib/R/lib -L/us
r/pkg/lib/R/lib -lR -lpcre -llzma -lbz2 -lrt -lm -liconv
*** Error code 1
>Fix:
Update to 2.3.10. This version can be downloaded from a different site: https://pypi.python.org/pypi/rpy2/2.3.10. There are some discrepancies in PLIST.
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