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pkg/50251: devel/py-h5py fails to build due to H5FD_MPIPOSIX undeclared
>Number: 50251
>Category: pkg
>Synopsis: devel/py-h5py fails to build due to H5FD_MPIPOSIX undeclared
>Confidential: no
>Severity: critical
>Priority: medium
>Responsible: pkg-manager
>State: open
>Class: sw-bug
>Submitter-Id: net
>Arrival-Date: Thu Sep 17 13:50:00 +0000 2015
>Originator: Sergey Litvinov
>Release: LInux
>Organization:
ETH
>Environment:
Linux 3.10.0-229.1.2.el7.x86_64 #1 SMP Fri Mar 27 03:04:26 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux
>Description:
bmake in
devel/py-h5py
fails with the following error
In file included from /home/lisergey/gerris-deploy/pkgsrc/devel/py-h5py/work/.buildlink/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/lisergey/gerris-deploy/pkgsrc/devel/py-h5py/work/.buildlink/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/lisergey/gerris-deploy/pkgsrc/devel/py-h5py/work/.buildlink/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from h5py/api_compat.h:21,
from h5py/h5fd.c:259:
/home/lisergey/gerris-deploy/pkgsrc/devel/py-h5py/work/.buildlink/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
h5py/h5fd.c: In function 'inith5fd':
h5py/h5fd.c:857:39: error: 'H5FD_MPIPOSIX' undeclared (first use in this function)
__pyx_t_1 = __Pyx_PyInt_to_py_hid_t(H5FD_MPIPOSIX); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 34; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
^
h5py/h5fd.c:857:39: note: each undeclared identifier is reported only once for each function it appears in
error: command 'gcc' failed with exit status 1
*** Error code 1
Stop.
bmake: stopped in /home/lisergey/gerris-deploy/pkgsrc/devel/py-h5py
*** Error code 1
It looks like this problem:
https://github.com/h5py/h5py/issues/446
>How-To-Repeat:
bmake in
devel/py-h5py
>Fix:
I can compile if I update the version
DISTNAME= h5py-2.3.1
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