[pkgsrc/trunk]: pkgsrc/math/R-sp Update to 1.2.5

[wen <wen%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/b3f07af561cd
branches:  trunk
changeset: 372302:b3f07af561cd
user:      wen <wen%pkgsrc.org@localhost>
date:      Sat Dec 02 12:09:54 2017 +0000

description:
Update to 1.2.5

Upstream changes:
Changes in version 1.2-5 (2017-06-16)

    address error in spplot, leading to display of "Error using packet 1: mixture of missing and non missing values for cex"

    address warning from Tomas Kalibera's static code checking

Changes in version 1.2-4 (2016-12-21)

    fix bug in duplicating objects in C; see https://github.com/edzer/sp/commit/8f8a66090e47cf0f6bbf5549376c0bc07b6c29df

    fix all long/lat-based great circle distance functions; see https://github.com/edzer/sp/commit/d8374ff7efc6735cba9a054748c602bed0672f23 and 
https://stat.ethz.ch/pipermail/r-sig-geo/2016-December/025201.html

    clarified cellcentre.offset documentation, see https://github.com/edzer/sp/issues/18

Changes in version 1.2-3 (2016-04-06)

    update sp gallery, see https://edzer.github.io/sp/

    move methods from Imports: to Depends:

    improve base plot methods for SpatialGridDataFrame and SpatialPixelsDataFrame objects, see http://r-spatial.org/r/2016/03/08/plotting-spatial-grids.html for examples

    improve the graticule labels methods, see ?gridlines

    fix hole assignment for triangles, reported in https://stat.ethz.ch/pipermail/r-sig-geo/2016-March/024214.html

    as.SpatialPolygons.GridTopology drops rownames of coordinates generated, but keeps coordinate (column) names from the cellcentre.offset slot of the grid

    improve examples in over vignette.

Changes in version 1.2-2 (2016-02-05)

    method 'row.names' for 'SpatialPoints' makes unique row names, or drops them.

    add a labels method for gridlines, drawing labels under varying angle (see gridlines example)

    add coercion (?as? methods) from deldir to SpatialLines and SpatialPolygons

    migrate sp code base to github

    correct [ subsetting when i is all FALSE; report by Francois Rousseau.

    add geometry<- method for Spatial, wrapping addAttrToGeom

    addressing rbind and docs issues raised by Kent Johnson on r-sig-geo, 5 Dec 2015

    get 'row.names' of coords correctly if object is a SpatialPoints

    add non-default coercion SpatialPolygonsDataFrame to SpatialPolygons

    add comment to SpatialPolygons coerced from SpatialGrid or SpatialPixels

    coordinates method for SpatiaLines now retains rownames

Changes in version 1.2-1 (2015-10-17)

    spsample.Spatial does no longer generate objects with rownames.

    CRS gains argument doCheckCRSArgs, to allow suppression of the default checking

    coercion from Lines to SpatialPoints now drops (duplicate) rownames

    add coercion from SpatialLines* to SpatialMultiPoints*

    improve printing of SpatialMultiPoint* objects

    aggregate now passes minDimension to rgeos; explanation of aggregate extended in its vignette

    depend on rgeos version 0.3-13

    merge now accepts "row.names" or 0 for arguments by.x or by.y, for compatibility with base::merge.

    aggregate now accepts parameter minDimension, introduced for over in 1.2-0, and passes it on to over to control when features intersect; see the documentation of over and its vignette for details.

    SpatialMultiPoints objects with zero features can now exist.

Changes in version 1.2-0 (2015-09-01)

    Support for SpatialMultiPoints and SpatialMultiPointsDataFrame objects. Where SpatialPoints are set of points, SpatialMultiPoints are sets of point sets. SpatialPointsDataFrame objects bind 
points to attribute values, SpatialMultiPointsDataFrame bind point sets to attribute values. Methods supported are subsetting ([), plot, spplot, over, and coercion to SpatialPoints or 
SpatialPointsDataFrame. Functions in rgeos support this feature class. See also demo(mp).

    creating SpatialPoints objects with duplicated coordinate rownames now gives a warning, which will become an error in the future.

    Support for Google Earth or OpenStreetMap background maps in sp::plot and spplot. Maps returned by

        function GetMap in package RgoogleMaps

        function get_map in package ggmap

    are now understood by plotting functions in sp. In particular, sp::plot now has an argument bgMap, spplot now has panel functions panel.RgoogleMaps and panel.ggmap; See demo(webmap) for examples.

    As these maps assume a web mercator projection, sp::plot issues a warning if the object to be plotted have a CRS that does not contain "+init=epsg:3857"

    over methods that are taken care of by rgeos (anything involving SpatialLines, or SpatialPolygons-SpatialPolygons) gained an argument minDimension, which causes an ordering of returned features 
by dimension of intersection, and the ability to select a minimun dimension (e.g. only area-overlap); this uses gRelate, and has a computational cost. Documentation found in vignette("over").

diffstat:

 math/R-sp/Makefile |   4 ++--
 math/R-sp/distinfo |  10 +++++-----
 2 files changed, 7 insertions(+), 7 deletions(-)

diffs (33 lines):

diff -r 7e30a9bc71a8 -r b3f07af561cd math/R-sp/Makefile
--- a/math/R-sp/Makefile        Sat Dec 02 12:01:24 2017 +0000
+++ b/math/R-sp/Makefile        Sat Dec 02 12:09:54 2017 +0000
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.8 2015/05/30 11:05:17 wen Exp $
+# $NetBSD: Makefile,v 1.9 2017/12/02 12:09:54 wen Exp $
 
 CATEGORIES=    math
 MASTER_SITES=  ${MASTER_SITE_R_CRAN:=contrib/}
@@ -9,7 +9,7 @@
 LICENSE=       gnu-gpl-v2 OR gnu-gpl-v3
 
 R_PKGNAME=     sp
-R_PKGVER=      1.1-0
+R_PKGVER=      1.2-5
 
 .include "../../math/R/Makefile.extension"
 .include "../../mk/bsd.pkg.mk"
diff -r 7e30a9bc71a8 -r b3f07af561cd math/R-sp/distinfo
--- a/math/R-sp/distinfo        Sat Dec 02 12:01:24 2017 +0000
+++ b/math/R-sp/distinfo        Sat Dec 02 12:09:54 2017 +0000
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.9 2015/11/03 23:33:29 agc Exp $
+$NetBSD: distinfo,v 1.10 2017/12/02 12:09:54 wen Exp $
 
-SHA1 (R/sp_1.1-0.tar.gz) = da95e76d604aba5ae861ef92a9a5292355931f7d
-RMD160 (R/sp_1.1-0.tar.gz) = ae053b3e0ba0b92596f5406aafd17f019959b3e9
-SHA512 (R/sp_1.1-0.tar.gz) = 65e2b764d9511932f02ddbf573b458c0ac5ad706590186ba92497cb31ee26f0387a97e7a36d89ed9f41e7cbd3344817da44550e7b76440639afc176c13e27fd8
-Size (R/sp_1.1-0.tar.gz) = 1175034 bytes
+SHA1 (R/sp_1.2-5.tar.gz) = 0e24d5a6d6fc3196a38d7d4ddfcca247dd6afbe8
+RMD160 (R/sp_1.2-5.tar.gz) = 6c6a51d3b2fe984024dfeb9158400ac4213e5f94
+SHA512 (R/sp_1.2-5.tar.gz) = 564f02d54e352dfa017eb0d8783898a066ac5db07b18388cd74e65b0354dd3555290bab3d929da326f780b1e1d3609d55f6eb1d3ffd8220c3c56e00f158c7d21
+Size (R/sp_1.2-5.tar.gz) = 1134121 bytes