[pkgsrc/trunk]: pkgsrc/math/py-scipy py-scipy: updated to 1.7.3

[adam <adam%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/917a5ffd5d58
branches:  trunk
changeset: 770462:917a5ffd5d58
user:      adam <adam%pkgsrc.org@localhost>
date:      Tue Nov 30 17:00:44 2021 +0000

description:
py-scipy: updated to 1.7.3

SciPy 1.7.3 is a bug-fix release that provides binary wheels
for MacOS arm64 with Python 3.8, 3.9, and 3.10. The MacOS arm64 wheels
are only available for MacOS version 12.0 and greater, as explained
in Issue 14688, linked below.

Issues closed for 1.7.3
-----------------------
* Segmentation fault on import of scipy.integrate on Apple M1 ARM...
* BUG: ARPACK's eigsh & OpenBLAS from Apple Silicon M1 (arm64)...
* four CI failures on pre-release job
* Remaining test failures for macOS arm64 wheel
* BUG: Segmentation fault caused by scipy.stats.qmc.qmc.update_discrepancy

Pull requests for 1.7.3
-----------------------
* BLD: update pyproject.toml for Python 3.10 changes
* BUG: out of bounds indexing in stats.qmc.update_discrepancy
* MAINT: skip a few failing tests in \`1.7.x\` for macOS arm64

diffstat:

 math/py-scipy/Makefile |   5 +++--
 math/py-scipy/PLIST    |  13 +++++++++++--
 math/py-scipy/distinfo |   9 ++++-----
 3 files changed, 18 insertions(+), 9 deletions(-)

diffs (67 lines):

diff -r 22af4873cbb1 -r 917a5ffd5d58 math/py-scipy/Makefile
--- a/math/py-scipy/Makefile    Tue Nov 30 17:00:38 2021 +0000
+++ b/math/py-scipy/Makefile    Tue Nov 30 17:00:44 2021 +0000
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.51 2021/11/06 11:53:13 adam Exp $
+# $NetBSD: Makefile,v 1.52 2021/11/30 17:00:44 adam Exp $
 
-DISTNAME=      scipy-1.7.2
+DISTNAME=      scipy-1.7.3
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=s/scipy/}
@@ -62,6 +62,7 @@
        cd ${WRKDIR} && \
        ${PYTHONBIN} -c "import scipy; scipy.test('full')"
 
+BUILDLINK_API_DEPENDS.boost-headers+=  boost-headers>=1.77.0nb1
 .include "../../devel/boost-headers/buildlink3.mk"
 .include "../../devel/py-cython/buildlink3.mk"
 .include "../../devel/py-pybind11/buildlink3.mk"
diff -r 22af4873cbb1 -r 917a5ffd5d58 math/py-scipy/PLIST
--- a/math/py-scipy/PLIST       Tue Nov 30 17:00:38 2021 +0000
+++ b/math/py-scipy/PLIST       Tue Nov 30 17:00:44 2021 +0000
@@ -1,10 +1,10 @@
-@comment $NetBSD: PLIST,v 1.20 2021/11/06 11:53:13 adam Exp $
+@comment $NetBSD: PLIST,v 1.21 2021/11/30 17:00:44 adam Exp $
 ${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
 ${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
 ${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
+${PYSITELIB}/${EGG_INFODIR}/not-zip-safe
 ${PYSITELIB}/${EGG_INFODIR}/requires.txt
 ${PYSITELIB}/${EGG_INFODIR}/top_level.txt
-${PYSITELIB}/${EGG_INFODIR}/not-zip-safe
 ${PYSITELIB}/scipy/HACKING.rst.txt
 ${PYSITELIB}/scipy/INSTALL.rst.txt
 ${PYSITELIB}/scipy/LICENSE.txt
@@ -1733,6 +1733,15 @@
 ${PYSITELIB}/scipy/stats/_binomtest.py
 ${PYSITELIB}/scipy/stats/_binomtest.pyc
 ${PYSITELIB}/scipy/stats/_binomtest.pyo
+${PYSITELIB}/scipy/stats/_boost/__init__.py
+${PYSITELIB}/scipy/stats/_boost/__init__.pyc
+${PYSITELIB}/scipy/stats/_boost/__init__.pyo
+${PYSITELIB}/scipy/stats/_boost/beta_ufunc.so
+${PYSITELIB}/scipy/stats/_boost/binom_ufunc.so
+${PYSITELIB}/scipy/stats/_boost/nbinom_ufunc.so
+${PYSITELIB}/scipy/stats/_boost/setup.py
+${PYSITELIB}/scipy/stats/_boost/setup.pyc
+${PYSITELIB}/scipy/stats/_boost/setup.pyo
 ${PYSITELIB}/scipy/stats/_bootstrap.py
 ${PYSITELIB}/scipy/stats/_bootstrap.pyc
 ${PYSITELIB}/scipy/stats/_bootstrap.pyo
diff -r 22af4873cbb1 -r 917a5ffd5d58 math/py-scipy/distinfo
--- a/math/py-scipy/distinfo    Tue Nov 30 17:00:38 2021 +0000
+++ b/math/py-scipy/distinfo    Tue Nov 30 17:00:44 2021 +0000
@@ -1,7 +1,6 @@
-$NetBSD: distinfo,v 1.28 2021/11/06 11:53:13 adam Exp $
+$NetBSD: distinfo,v 1.29 2021/11/30 17:00:44 adam Exp $
 
-BLAKE2s (scipy-1.7.2.tar.gz) = 7cd72804f51104082d305e80d8c4e95b67708268cb50c28e0b09daefe6740829
-SHA512 (scipy-1.7.2.tar.gz) = 87596430571ff2a43f067eaaf3254c0841dac82b9152cb64040f1a4d9bc5429aebc31c619ce55d74727f2a79567dfef4acbc6252c24c46d3c8849f97e6e8cfef
-Size (scipy-1.7.2.tar.gz) = 36104529 bytes
+BLAKE2s (scipy-1.7.3.tar.gz) = e3c2e0d6d9543b14e965c6e545b163acd3f698a2adf9c7acc31fac8f866bed13
+SHA512 (scipy-1.7.3.tar.gz) = 83fe00cf708a13a08d28af7022ec645d8976c177f2fefb56e0a47bfcbec726330b973d1f44364e23c939ae708e239a05904346f515ea1a37e8b70ad160b81cee
+Size (scipy-1.7.3.tar.gz) = 36102562 bytes
 SHA1 (patch-scipy_special___round.h) = bc05a935e6423ce8395450ad3b30e88826939422
-SHA1 (patch-scipy_stats_setup.py) = 23ecc1c0f709051920c3761a78d9edb75092ac79