[pkgsrc/trunk]: pkgsrc/biology/biolibc-tools biology/biolibc-tools: Update to...

[bacon <bacon%pkgsrc.org@localhost>]

details:   https://anonhg.NetBSD.org/pkgsrc/rev/9c7228365330
branches:  trunk
changeset: 389942:9c7228365330
user:      bacon <bacon%pkgsrc.org@localhost>
date:      Tue Dec 13 00:53:43 2022 +0000

description:
biology/biolibc-tools: Update to 0.1.4

Add deromanize subcommand to convert Roman numeral chromosome IDs
fastx-stats: Report standard deviation for read length

Changes:    https://github.com/auerlab/biolibc-tools/releases

diffstat:

 biology/biolibc-tools/Makefile |  6 ++++--
 biology/biolibc-tools/PLIST    |  4 +++-
 biology/biolibc-tools/distinfo |  8 ++++----
 3 files changed, 11 insertions(+), 7 deletions(-)

diffs (54 lines):

diff -r b6b062aa46d1 -r 9c7228365330 biology/biolibc-tools/Makefile
--- a/biology/biolibc-tools/Makefile    Tue Dec 13 00:05:53 2022 +0000
+++ b/biology/biolibc-tools/Makefile    Tue Dec 13 00:53:43 2022 +0000
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.4 2022/06/11 19:44:45 bacon Exp $
+# $NetBSD: Makefile,v 1.5 2022/12/13 00:53:43 bacon Exp $
 
-DISTNAME=      biolibc-tools-0.1.3
+DISTNAME=      biolibc-tools-0.1.4
 CATEGORIES=    biology
 MASTER_SITES=  ${MASTER_SITE_GITHUB:=auerlab/}
 
@@ -13,6 +13,8 @@
 MAKE_ENV+=     VERSION=${PKGVERSION}
 INSTALL_TARGET=        install-strip
 
+LDFLAGS.SunOS+=                -lresolv -lsocket -lnsl
+
 pre-build:
        cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend
 
diff -r b6b062aa46d1 -r 9c7228365330 biology/biolibc-tools/PLIST
--- a/biology/biolibc-tools/PLIST       Tue Dec 13 00:05:53 2022 +0000
+++ b/biology/biolibc-tools/PLIST       Tue Dec 13 00:53:43 2022 +0000
@@ -1,6 +1,7 @@
-@comment $NetBSD: PLIST,v 1.4 2022/06/11 19:44:45 bacon Exp $
+@comment $NetBSD: PLIST,v 1.5 2022/12/13 00:53:43 bacon Exp $
 bin/blt
 libexec/biolibc-tools/chrom-lens
+libexec/biolibc-tools/deromanize
 libexec/biolibc-tools/ensemblid2gene
 libexec/biolibc-tools/extract-seq
 libexec/biolibc-tools/fasta2seq
@@ -14,6 +15,7 @@
 libexec/biolibc-tools/vcf-downsample
 libexec/biolibc-tools/vcf-search
 man/man1/blt-chrom-lens.1
+man/man1/blt-deromanize.1
 man/man1/blt-ensemblid2gene.1
 man/man1/blt-extract-seq.1
 man/man1/blt-fasta2seq.1
diff -r b6b062aa46d1 -r 9c7228365330 biology/biolibc-tools/distinfo
--- a/biology/biolibc-tools/distinfo    Tue Dec 13 00:05:53 2022 +0000
+++ b/biology/biolibc-tools/distinfo    Tue Dec 13 00:53:43 2022 +0000
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.6 2022/06/11 19:44:45 bacon Exp $
+$NetBSD: distinfo,v 1.7 2022/12/13 00:53:43 bacon Exp $
 
-BLAKE2s (biolibc-tools-0.1.3.tar.gz) = 923b3f7794526c2f79decb1cb1dcadb6c742cc6bae77ff0c8543726ec42d2c64
-SHA512 (biolibc-tools-0.1.3.tar.gz) = 7bf2570c1635b4a363c58a1a7b7c1b9dccd4ac135be06dd6207c0e7c555a15847d3de95ea8fc94541cdabc1625e0d9a665a1473bc80709df7756fc2f8345da9e
-Size (biolibc-tools-0.1.3.tar.gz) = 27735 bytes
+BLAKE2s (biolibc-tools-0.1.4.tar.gz) = b428abaa6fcb018ad801d90d7aafdc3d1832026dac9c405a8f95a3cf917d02cd
+SHA512 (biolibc-tools-0.1.4.tar.gz) = 9e21ddaa28bef87815fc3251eea7241fd1f2c887403e5aafc5757a92a673e5109f0946b926dd4b6dfcc054390e2a4427dd1ba92043132996acbdc8ab1e9b5dcc
+Size (biolibc-tools-0.1.4.tar.gz) = 28878 bytes