Subject: CVS commit: pkgsrc/biology/mummer
To: None <pkgsrc-changes@NetBSD.org>
From: Jan Schaumann <jschauma@netbsd.org>
List: pkgsrc-changes
Date: 09/27/2003 22:24:57
Module Name: pkgsrc
Committed By: jschauma
Date: Sat Sep 27 22:24:57 UTC 2003
Update of /cvsroot/pkgsrc/biology/mummer
In directory ivanova.netbsd.org:/tmp/cvs-serv6685
Log Message:
Initial import of mummer, one of the many packages provided by
brook at biology dot nmsu dot edu and his team at NMSU.
Mummer is a system for aligning whole genome sequences. Using an efficient
data structure called a suffix tree, the system is able rapidly to align
sequences containing millions of nucleotides whether in complete or draft
form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s
of contigs from a shotgun sequencing project with ease, and will align them to
another set of contigs or a genome using the NUCmer program included with the
system.
Vendor Tag: TNF
Release Tags: pkgsrc-base
N pkgsrc/biology/mummer/Makefile
N pkgsrc/biology/mummer/DESCR
N pkgsrc/biology/mummer/PLIST
N pkgsrc/biology/mummer/distinfo
N pkgsrc/biology/mummer/patches/patch-aa
No conflicts created by this import