CVS commit: pkgsrc/math/py-numpy

["Adam Ciarcinski" <adam%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   adam
Date:           Fri Feb  1 09:24:25 UTC 2019

Modified Files:
        pkgsrc/math/py-numpy: Makefile PLIST distinfo
Added Files:
        pkgsrc/math/py-numpy/patches:
            patch-numpy_distutils_fcompiler_____init____.py
            patch-numpy_linalg_lapack__litemodule.c
Removed Files:
        pkgsrc/math/py-numpy/patches: patch-aa patch-ab

Log Message:
py-numpy: updated to 1.16.1

1.16.1:
* BUG: Check paths are unicode, bytes or path-like
* ENH: add mm->q floordiv
* ENH: port np.core.overrides to C for speed
* BUG: Ensure probabilities are not NaN in choice
* MAINT: add warning to numpy.distutils for LDFLAGS append behavior.
* ENH: add "max difference" messages to np.testing.assert_array_equal...
* BUG: Fix incorrect/missing reference cleanups found using valgrind
  that wraps subprocess
* DOC, TST: Clean up matplotlib imports
* BUG: Fix reference counting for subarrays containing objects
* BUG: Ensure failing memory allocations are reported
* BUG: Fix leak of void scalar buffer info
* MAINT: Change the order of checking for local file.
* BUG: loosen kwargs requirements in ediff1d
* DOC: clarify the extend of __array_function__ support in NumPy...
* BUG: Check that dtype or formats arguments are not None.
* BUG: fix f2py problem to build wrappers using PGI's Fortran
* BUG: double decref of dtype in failure codepath. Test and fix
* BUG, DOC: test, fix that f2py.compile accepts str and bytes,...
* BUG: resolve writeback in arr_insert failure paths
* ENH: Add mm->qm divmod
* BUG: Fix SystemError when pickling datetime64 array with pickle5
* BUG: Fix rounding of denormals in double and float to half casts.
* TEST: pin mingw version
* BUG: ndarrays pickled by 1.16 cannot be loaded by 1.15.4 and...
* BUG: do not Py_DECREF NULL pointer
* ENH: add _dtype_ctype to namespace for freeze analysis
* BUG: fail if old multiarray module detected
* BUG: Do not double-quote arguments passed on to the linker
* BUG: Do not insert extra double quote into preprocessor macros


To generate a diff of this commit:
cvs rdiff -u -r1.57 -r1.58 pkgsrc/math/py-numpy/Makefile
cvs rdiff -u -r1.24 -r1.25 pkgsrc/math/py-numpy/PLIST
cvs rdiff -u -r1.40 -r1.41 pkgsrc/math/py-numpy/distinfo
cvs rdiff -u -r1.6 -r0 pkgsrc/math/py-numpy/patches/patch-aa
cvs rdiff -u -r1.4 -r0 pkgsrc/math/py-numpy/patches/patch-ab
cvs rdiff -u -r0 -r1.1 \
    pkgsrc/math/py-numpy/patches/patch-numpy_distutils_fcompiler_____init____.py \
    pkgsrc/math/py-numpy/patches/patch-numpy_linalg_lapack__litemodule.c

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/math/py-numpy/Makefile
diff -u pkgsrc/math/py-numpy/Makefile:1.57 pkgsrc/math/py-numpy/Makefile:1.58
--- pkgsrc/math/py-numpy/Makefile:1.57  Tue Jan 15 21:36:57 2019
+++ pkgsrc/math/py-numpy/Makefile       Fri Feb  1 09:24:24 2019
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.57 2019/01/15 21:36:57 adam Exp $
+# $NetBSD: Makefile,v 1.58 2019/02/01 09:24:24 adam Exp $
 
-DISTNAME=      numpy-1.16.0
+DISTNAME=      numpy-1.16.1
 PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=    math python
 MASTER_SITES=  ${MASTER_SITE_PYPI:=n/numpy/}

Index: pkgsrc/math/py-numpy/PLIST
diff -u pkgsrc/math/py-numpy/PLIST:1.24 pkgsrc/math/py-numpy/PLIST:1.25
--- pkgsrc/math/py-numpy/PLIST:1.24     Tue Jan 15 21:36:57 2019
+++ pkgsrc/math/py-numpy/PLIST  Fri Feb  1 09:24:24 2019
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.24 2019/01/15 21:36:57 adam Exp $
+@comment $NetBSD: PLIST,v 1.25 2019/02/01 09:24:24 adam Exp $
 bin/f2py${PYVERSSUFFIX}
 ${PLIST.py2x}bin/f2py2
 ${PLIST.py3x}bin/f2py3
@@ -63,6 +63,7 @@ ${PYSITELIB}/numpy/core/_internal.pyo
 ${PYSITELIB}/numpy/core/_methods.py
 ${PYSITELIB}/numpy/core/_methods.pyc
 ${PYSITELIB}/numpy/core/_methods.pyo
+${PYSITELIB}/numpy/core/_multiarray_module_test.so
 ${PYSITELIB}/numpy/core/_multiarray_tests.so
 ${PYSITELIB}/numpy/core/_multiarray_umath.so
 ${PYSITELIB}/numpy/core/_operand_flag_tests.so

Index: pkgsrc/math/py-numpy/distinfo
diff -u pkgsrc/math/py-numpy/distinfo:1.40 pkgsrc/math/py-numpy/distinfo:1.41
--- pkgsrc/math/py-numpy/distinfo:1.40  Thu Jan 24 22:27:10 2019
+++ pkgsrc/math/py-numpy/distinfo       Fri Feb  1 09:24:24 2019
@@ -1,11 +1,11 @@
-$NetBSD: distinfo,v 1.40 2019/01/24 22:27:10 maya Exp $
+$NetBSD: distinfo,v 1.41 2019/02/01 09:24:24 adam Exp $
 
-SHA1 (numpy-1.16.0.zip) = 1a0f1faf9dea25c45ac691482051a3f81d094bd8
-RMD160 (numpy-1.16.0.zip) = fae6dfa563045508d509d26510f3d9d9772aad45
-SHA512 (numpy-1.16.0.zip) = a252748c54b349319c8b8b69aae8f58853ac698a9ad0fb04fd1150db543910f25bc88bb3ca73d3d51d0658ab9379756870bc7b24bbaf58ffb8717d80366a4c52
-Size (numpy-1.16.0.zip) = 5052439 bytes
-SHA1 (patch-aa) = e783263f1e3743aa79edd0b983e292a8646ef22e
-SHA1 (patch-ab) = b421455fdbb666c8075d8bffbeb59533434d23e6
+SHA1 (numpy-1.16.1.zip) = 49787ce8e31aff103a7b182749abc3c0249b7f72
+RMD160 (numpy-1.16.1.zip) = dd59773e393c7a41c7286b2ca93e13a415c830ec
+SHA512 (numpy-1.16.1.zip) = e4adce4f40a3cb6ac482f82db9fcd079179b03b0e878920cfc7d98b9f622adab997c68af892b209f417d5f31b4123a1c5ff5c07cf5b0aaa496d8be6c8354bde8
+Size (numpy-1.16.1.zip) = 5070040 bytes
+SHA1 (patch-numpy_distutils_fcompiler_____init____.py) = 49d070da5b48bd9818b37ac3254341fa68503c53
 SHA1 (patch-numpy_distutils_fcompiler_g95.py) = be73b64a3e551df998b6a904d6db762bf28a98ed
 SHA1 (patch-numpy_distutils_fcompiler_gnu.py) = db8d3238c618ecd5900650a2150efb9459e94e96
 SHA1 (patch-numpy_distutils_system__info.py) = dfd88a140b65a66c222a95ea4be6f20a33702e3b
+SHA1 (patch-numpy_linalg_lapack__litemodule.c) = b421455fdbb666c8075d8bffbeb59533434d23e6

Added files:

Index: pkgsrc/math/py-numpy/patches/patch-numpy_distutils_fcompiler_____init____.py
diff -u /dev/null pkgsrc/math/py-numpy/patches/patch-numpy_distutils_fcompiler_____init____.py:1.1
--- /dev/null   Fri Feb  1 09:24:25 2019
+++ pkgsrc/math/py-numpy/patches/patch-numpy_distutils_fcompiler_____init____.py        Fri Feb  1 09:24:25 2019
@@ -0,0 +1,15 @@
+$NetBSD: patch-numpy_distutils_fcompiler_____init____.py,v 1.1 2019/02/01 09:24:25 adam Exp $
+
+Recognize g95.
+
+--- numpy/distutils/fcompiler/__init__.py.orig 2013-04-07 05:04:05.000000000 +0000
++++ numpy/distutils/fcompiler/__init__.py
+@@ -756,7 +756,7 @@ _default_compilers = (
+     ('irix.*', ('mips', 'gnu', 'gnu95',)),
+     ('aix.*', ('ibm', 'gnu', 'gnu95',)),
+     # os.name mappings
+-    ('posix', ('gnu', 'gnu95',)),
++    ('posix', ('gnu', 'gnu95', 'g95',)),
+     ('nt', ('gnu', 'gnu95',)),
+     ('mac', ('gnu95', 'gnu', 'pg')),
+     )
Index: pkgsrc/math/py-numpy/patches/patch-numpy_linalg_lapack__litemodule.c
diff -u /dev/null pkgsrc/math/py-numpy/patches/patch-numpy_linalg_lapack__litemodule.c:1.1
--- /dev/null   Fri Feb  1 09:24:25 2019
+++ pkgsrc/math/py-numpy/patches/patch-numpy_linalg_lapack__litemodule.c        Fri Feb  1 09:24:25 2019
@@ -0,0 +1,15 @@
+$NetBSD: patch-numpy_linalg_lapack__litemodule.c,v 1.1 2019/02/01 09:24:25 adam Exp $
+
+Add function definition for FNAME(MAIN_).
+
+--- numpy/linalg/lapack_litemodule.c.orig      2015-04-16 14:14:55.000000000 +0000
++++ numpy/linalg/lapack_litemodule.c
+@@ -17,6 +17,8 @@ typedef struct { float r, i; } f2c_compl
+ typedef struct { double r, i; } f2c_doublecomplex;
+ /* typedef long int (*L_fp)(); */
+ 
++int FNAME(MAIN_)() { return 0; }
++
+ extern int FNAME(dgelsd)(int *m, int *n, int *nrhs,
+                           double a[], int *lda, double b[], int *ldb,
+                           double s[], double *rcond, int *rank,