CVS commit: pkgsrc

To: pkgsrc-changes%NetBSD.org@localhost
Subject: CVS commit: pkgsrc
From: "Brook Milligan" <brook%netbsd.org@localhost>
Date: Fri, 9 Aug 2019 21:52:34 +0000

Module Name:    pkgsrc
Committed By:   brook
Date:           Fri Aug  9 21:52:34 UTC 2019

Modified Files:
        pkgsrc/biology: Makefile
        pkgsrc/doc: CHANGES-2019
Added Files:
        pkgsrc/biology/py-biopython: DESCR Makefile PLIST distinfo

Log Message:
py-biopython: initial commit

The Biopython package contains high-quality, reusable modules and
scripts written in Python to make it as easy as possible to use Python
for bioinformatics.  The Biopython includes the follwing: the ability
to parse bioinformatics files into python utilizable data structures,
including support for the formats such as Blast output, Clustalw,
FASTA, GenBank, PubMed and Medicine, various Expasy files, SCOP,
Rebase, UniGene, and SwissProt.


To generate a diff of this commit:
cvs rdiff -u -r1.54 -r1.55 pkgsrc/biology/Makefile
cvs rdiff -u -r0 -r1.1 pkgsrc/biology/py-biopython/DESCR \
    pkgsrc/biology/py-biopython/Makefile pkgsrc/biology/py-biopython/PLIST \
    pkgsrc/biology/py-biopython/distinfo
cvs rdiff -u -r1.3378 -r1.3379 pkgsrc/doc/CHANGES-2019

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/Makefile
diff -u pkgsrc/biology/Makefile:1.54 pkgsrc/biology/Makefile:1.55
--- pkgsrc/biology/Makefile:1.54        Fri May 10 16:20:22 2019
+++ pkgsrc/biology/Makefile     Fri Aug  9 21:52:34 2019
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.54 2019/05/10 16:20:22 bacon Exp $
+# $NetBSD: Makefile,v 1.55 2019/08/09 21:52:34 brook Exp $
 #
 
 COMMENT=       Software for the biological sciences
@@ -43,6 +43,7 @@ SUBDIR+=      plinkseq
 SUBDIR+=       primer3
 SUBDIR+=       profit
 SUBDIR+=       puzzle
+SUBDIR+=       py-biopython
 SUBDIR+=       py-mol
 SUBDIR+=       py-pydicom
 SUBDIR+=       rasmol

Index: pkgsrc/doc/CHANGES-2019
diff -u pkgsrc/doc/CHANGES-2019:1.3378 pkgsrc/doc/CHANGES-2019:1.3379
--- pkgsrc/doc/CHANGES-2019:1.3378      Fri Aug  9 20:56:19 2019
+++ pkgsrc/doc/CHANGES-2019     Fri Aug  9 21:52:34 2019
@@ -1,4 +1,4 @@
-$NetBSD: CHANGES-2019,v 1.3378 2019/08/09 20:56:19 brook Exp $
+$NetBSD: CHANGES-2019,v 1.3379 2019/08/09 21:52:34 brook Exp $
 
 Changes to the packages collection and infrastructure in 2019:
 
@@ -5501,3 +5501,4 @@ Changes to the packages collection and i
        Added www/R-miniUI version 0.1.1.1 [brook 2019-08-09]
        Added graphics/R-colourpicker version 1.0 [brook 2019-08-09]
        Added graphics/R-ggExtra version 0.8 [brook 2019-08-09]
+       Added biology/py-biopython version 1.74 [brook 2019-08-09]

Added files:

Index: pkgsrc/biology/py-biopython/DESCR
diff -u /dev/null pkgsrc/biology/py-biopython/DESCR:1.1
--- /dev/null   Fri Aug  9 21:52:34 2019
+++ pkgsrc/biology/py-biopython/DESCR   Fri Aug  9 21:52:34 2019
@@ -0,0 +1,7 @@
+The Biopython package contains high-quality, reusable modules and
+scripts written in Python to make it as easy as possible to use Python
+for bioinformatics.  The Biopython includes the follwing: the ability
+to parse bioinformatics files into python utilizable data structures,
+including support for the formats such as Blast output, Clustalw,
+FASTA, GenBank, PubMed and Medicine, various Expasy files, SCOP,
+Rebase, UniGene, and SwissProt.
Index: pkgsrc/biology/py-biopython/Makefile
diff -u /dev/null pkgsrc/biology/py-biopython/Makefile:1.1
--- /dev/null   Fri Aug  9 21:52:34 2019
+++ pkgsrc/biology/py-biopython/Makefile        Fri Aug  9 21:52:34 2019
@@ -0,0 +1,24 @@
+# $NetBSD: Makefile,v 1.1 2019/08/09 21:52:34 brook Exp $
+
+DISTNAME=      biopython-1.74
+PKGNAME=       ${PYPKGPREFIX}-${DISTNAME}
+CATEGORIES=    biology
+MASTER_SITES=  http://biopython.org/DIST/
+
+MAINTAINER=    pkgsrc-users%NetBSD.org@localhost
+HOMEPAGE=      http://biopython.org/
+COMMENT=       Python libraries for computational molecular biology
+LICENSE=       biopython-license
+
+USE_TOOLS+=    pax
+
+INSTALLATION_DIRS+=    share/doc/biopython share/examples/biopython
+
+post-install:
+       ${INSTALL_DATA} ${WRKSRC}/README.rst ${DESTDIR}${PREFIX}/share/doc/biopython
+       ${INSTALL_DATA} ${WRKSRC}/Doc/Tutorial.pdf ${DESTDIR}${PREFIX}/share/doc/biopython
+       cd ${WRKSRC}/Doc/examples && ${PAX} -rw . ${DESTDIR}${PREFIX}/share/examples/biopython
+
+.include "../../lang/python/egg.mk"
+.include "../../math/py-numpy/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
Index: pkgsrc/biology/py-biopython/PLIST
diff -u /dev/null pkgsrc/biology/py-biopython/PLIST:1.1
--- /dev/null   Fri Aug  9 21:52:34 2019
+++ pkgsrc/biology/py-biopython/PLIST   Fri Aug  9 21:52:34 2019
@@ -0,0 +1,1262 @@
+@comment $NetBSD: PLIST,v 1.1 2019/08/09 21:52:34 brook Exp $
+${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
+${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
+${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
+${PYSITELIB}/${EGG_INFODIR}/requires.txt
+${PYSITELIB}/${EGG_INFODIR}/top_level.txt
+${PYSITELIB}/Bio/Affy/CelFile.py
+${PYSITELIB}/Bio/Affy/CelFile.pyc
+${PYSITELIB}/Bio/Affy/CelFile.pyo
+${PYSITELIB}/Bio/Affy/__init__.py
+${PYSITELIB}/Bio/Affy/__init__.pyc
+${PYSITELIB}/Bio/Affy/__init__.pyo
+${PYSITELIB}/Bio/Align/AlignInfo.py
+${PYSITELIB}/Bio/Align/AlignInfo.pyc
+${PYSITELIB}/Bio/Align/AlignInfo.pyo
+${PYSITELIB}/Bio/Align/Applications/_ClustalOmega.py
+${PYSITELIB}/Bio/Align/Applications/_ClustalOmega.pyc
+${PYSITELIB}/Bio/Align/Applications/_ClustalOmega.pyo
+${PYSITELIB}/Bio/Align/Applications/_Clustalw.py
+${PYSITELIB}/Bio/Align/Applications/_Clustalw.pyc
+${PYSITELIB}/Bio/Align/Applications/_Clustalw.pyo
+${PYSITELIB}/Bio/Align/Applications/_Dialign.py
+${PYSITELIB}/Bio/Align/Applications/_Dialign.pyc
+${PYSITELIB}/Bio/Align/Applications/_Dialign.pyo
+${PYSITELIB}/Bio/Align/Applications/_MSAProbs.py
+${PYSITELIB}/Bio/Align/Applications/_MSAProbs.pyc
+${PYSITELIB}/Bio/Align/Applications/_MSAProbs.pyo
+${PYSITELIB}/Bio/Align/Applications/_Mafft.py
+${PYSITELIB}/Bio/Align/Applications/_Mafft.pyc
+${PYSITELIB}/Bio/Align/Applications/_Mafft.pyo
+${PYSITELIB}/Bio/Align/Applications/_Muscle.py
+${PYSITELIB}/Bio/Align/Applications/_Muscle.pyc
+${PYSITELIB}/Bio/Align/Applications/_Muscle.pyo
+${PYSITELIB}/Bio/Align/Applications/_Prank.py
+${PYSITELIB}/Bio/Align/Applications/_Prank.pyc
+${PYSITELIB}/Bio/Align/Applications/_Prank.pyo
+${PYSITELIB}/Bio/Align/Applications/_Probcons.py
+${PYSITELIB}/Bio/Align/Applications/_Probcons.pyc
+${PYSITELIB}/Bio/Align/Applications/_Probcons.pyo
+${PYSITELIB}/Bio/Align/Applications/_TCoffee.py
+${PYSITELIB}/Bio/Align/Applications/_TCoffee.pyc
+${PYSITELIB}/Bio/Align/Applications/_TCoffee.pyo
+${PYSITELIB}/Bio/Align/Applications/__init__.py
+${PYSITELIB}/Bio/Align/Applications/__init__.pyc
+${PYSITELIB}/Bio/Align/Applications/__init__.pyo
+${PYSITELIB}/Bio/Align/__init__.py
+${PYSITELIB}/Bio/Align/__init__.pyc
+${PYSITELIB}/Bio/Align/__init__.pyo
+${PYSITELIB}/Bio/Align/_aligners.c
+${PYSITELIB}/Bio/Align/_aligners.so
+${PYSITELIB}/Bio/AlignIO/ClustalIO.py
+${PYSITELIB}/Bio/AlignIO/ClustalIO.pyc
+${PYSITELIB}/Bio/AlignIO/ClustalIO.pyo
+${PYSITELIB}/Bio/AlignIO/EmbossIO.py
+${PYSITELIB}/Bio/AlignIO/EmbossIO.pyc
+${PYSITELIB}/Bio/AlignIO/EmbossIO.pyo
+${PYSITELIB}/Bio/AlignIO/FastaIO.py
+${PYSITELIB}/Bio/AlignIO/FastaIO.pyc
+${PYSITELIB}/Bio/AlignIO/FastaIO.pyo
+${PYSITELIB}/Bio/AlignIO/Interfaces.py
+${PYSITELIB}/Bio/AlignIO/Interfaces.pyc
+${PYSITELIB}/Bio/AlignIO/Interfaces.pyo
+${PYSITELIB}/Bio/AlignIO/MafIO.py
+${PYSITELIB}/Bio/AlignIO/MafIO.pyc
+${PYSITELIB}/Bio/AlignIO/MafIO.pyo
+${PYSITELIB}/Bio/AlignIO/MauveIO.py
+${PYSITELIB}/Bio/AlignIO/MauveIO.pyc
+${PYSITELIB}/Bio/AlignIO/MauveIO.pyo
+${PYSITELIB}/Bio/AlignIO/NexusIO.py
+${PYSITELIB}/Bio/AlignIO/NexusIO.pyc
+${PYSITELIB}/Bio/AlignIO/NexusIO.pyo
+${PYSITELIB}/Bio/AlignIO/PhylipIO.py
+${PYSITELIB}/Bio/AlignIO/PhylipIO.pyc
+${PYSITELIB}/Bio/AlignIO/PhylipIO.pyo
+${PYSITELIB}/Bio/AlignIO/StockholmIO.py
+${PYSITELIB}/Bio/AlignIO/StockholmIO.pyc
+${PYSITELIB}/Bio/AlignIO/StockholmIO.pyo
+${PYSITELIB}/Bio/AlignIO/__init__.py
+${PYSITELIB}/Bio/AlignIO/__init__.pyc
+${PYSITELIB}/Bio/AlignIO/__init__.pyo
+${PYSITELIB}/Bio/Alphabet/IUPAC.py
+${PYSITELIB}/Bio/Alphabet/IUPAC.pyc
+${PYSITELIB}/Bio/Alphabet/IUPAC.pyo
+${PYSITELIB}/Bio/Alphabet/Reduced.py
+${PYSITELIB}/Bio/Alphabet/Reduced.pyc
+${PYSITELIB}/Bio/Alphabet/Reduced.pyo
+${PYSITELIB}/Bio/Alphabet/__init__.py
+${PYSITELIB}/Bio/Alphabet/__init__.pyc
+${PYSITELIB}/Bio/Alphabet/__init__.pyo
+${PYSITELIB}/Bio/Application/__init__.py
+${PYSITELIB}/Bio/Application/__init__.pyc
+${PYSITELIB}/Bio/Application/__init__.pyo
+${PYSITELIB}/Bio/Blast/Applications.py
+${PYSITELIB}/Bio/Blast/Applications.pyc
+${PYSITELIB}/Bio/Blast/Applications.pyo
+${PYSITELIB}/Bio/Blast/NCBIWWW.py
+${PYSITELIB}/Bio/Blast/NCBIWWW.pyc
+${PYSITELIB}/Bio/Blast/NCBIWWW.pyo
+${PYSITELIB}/Bio/Blast/NCBIXML.py
+${PYSITELIB}/Bio/Blast/NCBIXML.pyc
+${PYSITELIB}/Bio/Blast/NCBIXML.pyo
+${PYSITELIB}/Bio/Blast/ParseBlastTable.py
+${PYSITELIB}/Bio/Blast/ParseBlastTable.pyc
+${PYSITELIB}/Bio/Blast/ParseBlastTable.pyo
+${PYSITELIB}/Bio/Blast/Record.py
+${PYSITELIB}/Bio/Blast/Record.pyc
+${PYSITELIB}/Bio/Blast/Record.pyo
+${PYSITELIB}/Bio/Blast/__init__.py
+${PYSITELIB}/Bio/Blast/__init__.pyc
+${PYSITELIB}/Bio/Blast/__init__.pyo
+${PYSITELIB}/Bio/CAPS/__init__.py
+${PYSITELIB}/Bio/CAPS/__init__.pyc
+${PYSITELIB}/Bio/CAPS/__init__.pyo
+${PYSITELIB}/Bio/Cluster/__init__.py
+${PYSITELIB}/Bio/Cluster/__init__.pyc
+${PYSITELIB}/Bio/Cluster/__init__.pyo
+${PYSITELIB}/Bio/Cluster/_cluster.so
+${PYSITELIB}/Bio/Cluster/cluster.c
+${PYSITELIB}/Bio/Cluster/cluster.h
+${PYSITELIB}/Bio/Cluster/clustermodule.c
+${PYSITELIB}/Bio/Compass/__init__.py
+${PYSITELIB}/Bio/Compass/__init__.pyc
+${PYSITELIB}/Bio/Compass/__init__.pyo
+${PYSITELIB}/Bio/Crystal/__init__.py
+${PYSITELIB}/Bio/Crystal/__init__.pyc
+${PYSITELIB}/Bio/Crystal/__init__.pyo
+${PYSITELIB}/Bio/Data/CodonTable.py
+${PYSITELIB}/Bio/Data/CodonTable.pyc
+${PYSITELIB}/Bio/Data/CodonTable.pyo
+${PYSITELIB}/Bio/Data/IUPACData.py
+${PYSITELIB}/Bio/Data/IUPACData.pyc
+${PYSITELIB}/Bio/Data/IUPACData.pyo
+${PYSITELIB}/Bio/Data/SCOPData.py
+${PYSITELIB}/Bio/Data/SCOPData.pyc
+${PYSITELIB}/Bio/Data/SCOPData.pyo
+${PYSITELIB}/Bio/Data/__init__.py
+${PYSITELIB}/Bio/Data/__init__.pyc
+${PYSITELIB}/Bio/Data/__init__.pyo
+${PYSITELIB}/Bio/Emboss/Applications.py
+${PYSITELIB}/Bio/Emboss/Applications.pyc
+${PYSITELIB}/Bio/Emboss/Applications.pyo
+${PYSITELIB}/Bio/Emboss/Primer3.py
+${PYSITELIB}/Bio/Emboss/Primer3.pyc
+${PYSITELIB}/Bio/Emboss/Primer3.pyo
+${PYSITELIB}/Bio/Emboss/PrimerSearch.py
+${PYSITELIB}/Bio/Emboss/PrimerSearch.pyc
+${PYSITELIB}/Bio/Emboss/PrimerSearch.pyo
+${PYSITELIB}/Bio/Emboss/__init__.py
+${PYSITELIB}/Bio/Emboss/__init__.pyc
+${PYSITELIB}/Bio/Emboss/__init__.pyo
+${PYSITELIB}/Bio/Entrez/DTDs/Docsum_3_0.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/Docsum_3_1.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/Docsum_3_2.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/Docsum_3_3.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/Docsum_3_4.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/EMBL_General.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/EMBL_General.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/GenBank_General.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/GenBank_General.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/HomoloGene.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/HomoloGene.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/INSD_INSDSeq.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/MMDB.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/MMDB.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/MMDB_Features.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/MMDB_Features.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/MMDB_Structural_model.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Access.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Access.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Biblio.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_BioSource.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_BioTree.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Blast4.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_BlastDL.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Cdd.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Cn3d.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Entrez2.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_FeatDef.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_GBSeq.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Gene.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_General.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_General.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_ID1Access.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_ID2Access.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_MedArchive.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Medlars.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Medline.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Mim.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Mime.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Organism.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_PCAssay.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Project.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Project.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Protein.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Pub.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_PubMed.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_RNA.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Remap.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Rsite.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_SeqCode.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_SeqTable.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Seq_split.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Seqalign.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Seqloc.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Seqres.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Seqset.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Sequence.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Submit.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Systems.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_TSeq.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_TxInit.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Variation.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NCBI_all.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NSE.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/NSE.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/OMSSA.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/OMSSA.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/PDB_General.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/PDB_General.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/PIR_General.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/PIR_General.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/PRF_General.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/PRF_General.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/SP_General.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/SP_General.mod.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/XHTMLtablesetup.ent
+${PYSITELIB}/Bio/Entrez/DTDs/archivearticle.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/archivecustom-classes.ent
+${PYSITELIB}/Bio/Entrez/DTDs/archivecustom-mixes.ent
+${PYSITELIB}/Bio/Entrez/DTDs/archivecustom-models.ent
+${PYSITELIB}/Bio/Entrez/DTDs/archivecustom-modules.ent
+${PYSITELIB}/Bio/Entrez/DTDs/articlemeta.ent
+${PYSITELIB}/Bio/Entrez/DTDs/backmatter.ent
+${PYSITELIB}/Bio/Entrez/DTDs/bookdoc_100301.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/bookdoc_110101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/bookdoc_120101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/bookdoc_130101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/bookdoc_140101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/bookdoc_150101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/chars.ent
+${PYSITELIB}/Bio/Entrez/DTDs/common.ent
+${PYSITELIB}/Bio/Entrez/DTDs/default-classes.ent
+${PYSITELIB}/Bio/Entrez/DTDs/default-mixes.ent
+${PYSITELIB}/Bio/Entrez/DTDs/display.ent
+${PYSITELIB}/Bio/Entrez/DTDs/eInfo_020511.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/eLink_090910.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/eLink_101123.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/ePost_020511.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/eSearch_020511.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/eSpell.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/eSummary_041029.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/egquery.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/einfo.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/elink_020122.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/esearch.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/esummary-v1.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/format.ent
+${PYSITELIB}/Bio/Entrez/DTDs/htmltable.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/isoamsa.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isoamsb.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isoamsc.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isoamsn.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isoamso.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isoamsr.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isobox.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isocyr1.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isocyr2.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isodia.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isogrk1.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isogrk2.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isogrk3.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isogrk4.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isolat1.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isolat2.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isomfrk.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isomopf.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isomscr.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isonum.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isopub.ent
+${PYSITELIB}/Bio/Entrez/DTDs/isotech.ent
+${PYSITELIB}/Bio/Entrez/DTDs/journalmeta.ent
+${PYSITELIB}/Bio/Entrez/DTDs/link.ent
+${PYSITELIB}/Bio/Entrez/DTDs/list.ent
+${PYSITELIB}/Bio/Entrez/DTDs/math.ent
+${PYSITELIB}/Bio/Entrez/DTDs/mathml-in-pubmed.mod
+${PYSITELIB}/Bio/Entrez/DTDs/mathml2-qname-1.mod
+${PYSITELIB}/Bio/Entrez/DTDs/mathml2.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/mathml3-qname1.mod
+${PYSITELIB}/Bio/Entrez/DTDs/mathml3.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/mathmlsetup.ent
+${PYSITELIB}/Bio/Entrez/DTDs/mmlalias.ent
+${PYSITELIB}/Bio/Entrez/DTDs/mmlextra.ent
+${PYSITELIB}/Bio/Entrez/DTDs/modules.ent
+${PYSITELIB}/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmcommon_011101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmcommon_080101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmcommon_090101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmmedline_011101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmmedline_080101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmmedline_090101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmserials_080101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmserials_100101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/notat.ent
+${PYSITELIB}/Bio/Entrez/DTDs/para.ent
+${PYSITELIB}/Bio/Entrez/DTDs/phrase.ent
+${PYSITELIB}/Bio/Entrez/DTDs/pmc-1.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/pubmed_020114.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/pubmed_080101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/pubmed_090101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/pubmed_100101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/pubmed_100301.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/pubmed_110101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/pubmed_120101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/pubmed_130101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/pubmed_130501.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/pubmed_140101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/pubmed_150101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/pubmed_180101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/pubmed_180601.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/pubmed_190101.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/references.ent
+${PYSITELIB}/Bio/Entrez/DTDs/section.ent
+${PYSITELIB}/Bio/Entrez/DTDs/taxon.dtd
+${PYSITELIB}/Bio/Entrez/DTDs/xmlspecchars.ent
+${PYSITELIB}/Bio/Entrez/Parser.py
+${PYSITELIB}/Bio/Entrez/Parser.pyc
+${PYSITELIB}/Bio/Entrez/Parser.pyo
+${PYSITELIB}/Bio/Entrez/XSDs/IPGReportSet.xsd
+${PYSITELIB}/Bio/Entrez/__init__.py
+${PYSITELIB}/Bio/Entrez/__init__.pyc
+${PYSITELIB}/Bio/Entrez/__init__.pyo
+${PYSITELIB}/Bio/ExPASy/Enzyme.py
+${PYSITELIB}/Bio/ExPASy/Enzyme.pyc
+${PYSITELIB}/Bio/ExPASy/Enzyme.pyo
+${PYSITELIB}/Bio/ExPASy/Prodoc.py
+${PYSITELIB}/Bio/ExPASy/Prodoc.pyc
+${PYSITELIB}/Bio/ExPASy/Prodoc.pyo
+${PYSITELIB}/Bio/ExPASy/Prosite.py
+${PYSITELIB}/Bio/ExPASy/Prosite.pyc
+${PYSITELIB}/Bio/ExPASy/Prosite.pyo
+${PYSITELIB}/Bio/ExPASy/ScanProsite.py
+${PYSITELIB}/Bio/ExPASy/ScanProsite.pyc
+${PYSITELIB}/Bio/ExPASy/ScanProsite.pyo
+${PYSITELIB}/Bio/ExPASy/__init__.py
+${PYSITELIB}/Bio/ExPASy/__init__.pyc
+${PYSITELIB}/Bio/ExPASy/__init__.pyo
+${PYSITELIB}/Bio/ExPASy/cellosaurus.py
+${PYSITELIB}/Bio/ExPASy/cellosaurus.pyc
+${PYSITELIB}/Bio/ExPASy/cellosaurus.pyo
+${PYSITELIB}/Bio/FSSP/FSSPTools.py
+${PYSITELIB}/Bio/FSSP/FSSPTools.pyc
+${PYSITELIB}/Bio/FSSP/FSSPTools.pyo
+${PYSITELIB}/Bio/FSSP/__init__.py
+${PYSITELIB}/Bio/FSSP/__init__.pyc
+${PYSITELIB}/Bio/FSSP/__init__.pyo
+${PYSITELIB}/Bio/FSSP/fssp_rec.py
+${PYSITELIB}/Bio/FSSP/fssp_rec.pyc
+${PYSITELIB}/Bio/FSSP/fssp_rec.pyo
+${PYSITELIB}/Bio/File.py
+${PYSITELIB}/Bio/File.pyc
+${PYSITELIB}/Bio/File.pyo
+${PYSITELIB}/Bio/GenBank/Record.py
+${PYSITELIB}/Bio/GenBank/Record.pyc
+${PYSITELIB}/Bio/GenBank/Record.pyo
+${PYSITELIB}/Bio/GenBank/Scanner.py
+${PYSITELIB}/Bio/GenBank/Scanner.pyc
+${PYSITELIB}/Bio/GenBank/Scanner.pyo
+${PYSITELIB}/Bio/GenBank/__init__.py
+${PYSITELIB}/Bio/GenBank/__init__.pyc
+${PYSITELIB}/Bio/GenBank/__init__.pyo
+${PYSITELIB}/Bio/GenBank/utils.py
+${PYSITELIB}/Bio/GenBank/utils.pyc
+${PYSITELIB}/Bio/GenBank/utils.pyo
+${PYSITELIB}/Bio/Geo/Record.py
+${PYSITELIB}/Bio/Geo/Record.pyc
+${PYSITELIB}/Bio/Geo/Record.pyo
+${PYSITELIB}/Bio/Geo/__init__.py
+${PYSITELIB}/Bio/Geo/__init__.pyc
+${PYSITELIB}/Bio/Geo/__init__.pyo
+${PYSITELIB}/Bio/Graphics/BasicChromosome.py
+${PYSITELIB}/Bio/Graphics/BasicChromosome.pyc
+${PYSITELIB}/Bio/Graphics/BasicChromosome.pyo
+${PYSITELIB}/Bio/Graphics/ColorSpiral.py
+${PYSITELIB}/Bio/Graphics/ColorSpiral.pyc
+${PYSITELIB}/Bio/Graphics/ColorSpiral.pyo
+${PYSITELIB}/Bio/Graphics/Comparative.py
+${PYSITELIB}/Bio/Graphics/Comparative.pyc
+${PYSITELIB}/Bio/Graphics/Comparative.pyo
+${PYSITELIB}/Bio/Graphics/DisplayRepresentation.py
+${PYSITELIB}/Bio/Graphics/DisplayRepresentation.pyc
+${PYSITELIB}/Bio/Graphics/DisplayRepresentation.pyo
+${PYSITELIB}/Bio/Graphics/Distribution.py
+${PYSITELIB}/Bio/Graphics/Distribution.pyc
+${PYSITELIB}/Bio/Graphics/Distribution.pyo
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_AbstractDrawer.pyc
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_AbstractDrawer.pyo
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_CircularDrawer.py
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_CircularDrawer.pyc
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_CircularDrawer.pyo
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Colors.py
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Colors.pyc
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Colors.pyo
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_CrossLink.py
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_CrossLink.pyc
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_CrossLink.pyo
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Diagram.py
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Diagram.pyc
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Diagram.pyo
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Feature.py
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Feature.pyc
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Feature.pyo
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_FeatureSet.py
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_FeatureSet.pyc
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_FeatureSet.pyo
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Graph.py
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Graph.pyc
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Graph.pyo
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_GraphSet.py
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_GraphSet.pyc
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_GraphSet.pyo
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_LinearDrawer.py
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_LinearDrawer.pyc
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_LinearDrawer.pyo
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Track.py
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Track.pyc
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/_Track.pyo
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/__init__.py
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/__init__.pyc
+${PYSITELIB}/Bio/Graphics/GenomeDiagram/__init__.pyo
+${PYSITELIB}/Bio/Graphics/KGML_vis.py
+${PYSITELIB}/Bio/Graphics/KGML_vis.pyc
+${PYSITELIB}/Bio/Graphics/KGML_vis.pyo
+${PYSITELIB}/Bio/Graphics/__init__.py
+${PYSITELIB}/Bio/Graphics/__init__.pyc
+${PYSITELIB}/Bio/Graphics/__init__.pyo
+${PYSITELIB}/Bio/HMM/DynamicProgramming.py
+${PYSITELIB}/Bio/HMM/DynamicProgramming.pyc
+${PYSITELIB}/Bio/HMM/DynamicProgramming.pyo
+${PYSITELIB}/Bio/HMM/MarkovModel.py
+${PYSITELIB}/Bio/HMM/MarkovModel.pyc
+${PYSITELIB}/Bio/HMM/MarkovModel.pyo
+${PYSITELIB}/Bio/HMM/Trainer.py
+${PYSITELIB}/Bio/HMM/Trainer.pyc
+${PYSITELIB}/Bio/HMM/Trainer.pyo
+${PYSITELIB}/Bio/HMM/Utilities.py
+${PYSITELIB}/Bio/HMM/Utilities.pyc
+${PYSITELIB}/Bio/HMM/Utilities.pyo
+${PYSITELIB}/Bio/HMM/__init__.py
+${PYSITELIB}/Bio/HMM/__init__.pyc
+${PYSITELIB}/Bio/HMM/__init__.pyo
+${PYSITELIB}/Bio/Index.py
+${PYSITELIB}/Bio/Index.pyc
+${PYSITELIB}/Bio/Index.pyo
+${PYSITELIB}/Bio/KDTree/KDTree.c
+${PYSITELIB}/Bio/KDTree/KDTree.h
+${PYSITELIB}/Bio/KDTree/KDTree.py
+${PYSITELIB}/Bio/KDTree/KDTree.pyc
+${PYSITELIB}/Bio/KDTree/KDTree.pyo
+${PYSITELIB}/Bio/KDTree/KDTreemodule.c
+${PYSITELIB}/Bio/KDTree/Neighbor.h
+${PYSITELIB}/Bio/KDTree/_CKDTree.so
+${PYSITELIB}/Bio/KDTree/__init__.py
+${PYSITELIB}/Bio/KDTree/__init__.pyc
+${PYSITELIB}/Bio/KDTree/__init__.pyo
+${PYSITELIB}/Bio/KEGG/Compound/__init__.py
+${PYSITELIB}/Bio/KEGG/Compound/__init__.pyc
+${PYSITELIB}/Bio/KEGG/Compound/__init__.pyo
+${PYSITELIB}/Bio/KEGG/Enzyme/__init__.py
+${PYSITELIB}/Bio/KEGG/Enzyme/__init__.pyc
+${PYSITELIB}/Bio/KEGG/Enzyme/__init__.pyo
+${PYSITELIB}/Bio/KEGG/Gene/__init__.py
+${PYSITELIB}/Bio/KEGG/Gene/__init__.pyc
+${PYSITELIB}/Bio/KEGG/Gene/__init__.pyo
+${PYSITELIB}/Bio/KEGG/KGML/KGML_parser.py
+${PYSITELIB}/Bio/KEGG/KGML/KGML_parser.pyc
+${PYSITELIB}/Bio/KEGG/KGML/KGML_parser.pyo
+${PYSITELIB}/Bio/KEGG/KGML/KGML_pathway.py
+${PYSITELIB}/Bio/KEGG/KGML/KGML_pathway.pyc
+${PYSITELIB}/Bio/KEGG/KGML/KGML_pathway.pyo
+${PYSITELIB}/Bio/KEGG/KGML/__init__.py
+${PYSITELIB}/Bio/KEGG/KGML/__init__.pyc
+${PYSITELIB}/Bio/KEGG/KGML/__init__.pyo
+${PYSITELIB}/Bio/KEGG/Map/__init__.py
+${PYSITELIB}/Bio/KEGG/Map/__init__.pyc
+${PYSITELIB}/Bio/KEGG/Map/__init__.pyo
+${PYSITELIB}/Bio/KEGG/REST.py
+${PYSITELIB}/Bio/KEGG/REST.pyc
+${PYSITELIB}/Bio/KEGG/REST.pyo
+${PYSITELIB}/Bio/KEGG/__init__.py
+${PYSITELIB}/Bio/KEGG/__init__.pyc
+${PYSITELIB}/Bio/KEGG/__init__.pyo
+${PYSITELIB}/Bio/LogisticRegression.py
+${PYSITELIB}/Bio/LogisticRegression.pyc
+${PYSITELIB}/Bio/LogisticRegression.pyo
+${PYSITELIB}/Bio/MarkovModel.py
+${PYSITELIB}/Bio/MarkovModel.pyc
+${PYSITELIB}/Bio/MarkovModel.pyo
+${PYSITELIB}/Bio/MaxEntropy.py
+${PYSITELIB}/Bio/MaxEntropy.pyc
+${PYSITELIB}/Bio/MaxEntropy.pyo
+${PYSITELIB}/Bio/Medline/__init__.py
+${PYSITELIB}/Bio/Medline/__init__.pyc
+${PYSITELIB}/Bio/Medline/__init__.pyo
+${PYSITELIB}/Bio/NMR/NOEtools.py
+${PYSITELIB}/Bio/NMR/NOEtools.pyc
+${PYSITELIB}/Bio/NMR/NOEtools.pyo
+${PYSITELIB}/Bio/NMR/__init__.py
+${PYSITELIB}/Bio/NMR/__init__.pyc
+${PYSITELIB}/Bio/NMR/__init__.pyo
+${PYSITELIB}/Bio/NMR/xpktools.py
+${PYSITELIB}/Bio/NMR/xpktools.pyc
+${PYSITELIB}/Bio/NMR/xpktools.pyo
+${PYSITELIB}/Bio/NaiveBayes.py
+${PYSITELIB}/Bio/NaiveBayes.pyc
+${PYSITELIB}/Bio/NaiveBayes.pyo
+${PYSITELIB}/Bio/Nexus/Nexus.py
+${PYSITELIB}/Bio/Nexus/Nexus.pyc
+${PYSITELIB}/Bio/Nexus/Nexus.pyo
+${PYSITELIB}/Bio/Nexus/Nodes.py
+${PYSITELIB}/Bio/Nexus/Nodes.pyc
+${PYSITELIB}/Bio/Nexus/Nodes.pyo
+${PYSITELIB}/Bio/Nexus/StandardData.py
+${PYSITELIB}/Bio/Nexus/StandardData.pyc
+${PYSITELIB}/Bio/Nexus/StandardData.pyo
+${PYSITELIB}/Bio/Nexus/Trees.py
+${PYSITELIB}/Bio/Nexus/Trees.pyc
+${PYSITELIB}/Bio/Nexus/Trees.pyo
+${PYSITELIB}/Bio/Nexus/__init__.py
+${PYSITELIB}/Bio/Nexus/__init__.pyc
+${PYSITELIB}/Bio/Nexus/__init__.pyo
+${PYSITELIB}/Bio/Nexus/cnexus.c
+${PYSITELIB}/Bio/Nexus/cnexus.so
+${PYSITELIB}/Bio/PDB/AbstractPropertyMap.py
+${PYSITELIB}/Bio/PDB/AbstractPropertyMap.pyc
+${PYSITELIB}/Bio/PDB/AbstractPropertyMap.pyo
+${PYSITELIB}/Bio/PDB/Atom.py
+${PYSITELIB}/Bio/PDB/Atom.pyc
+${PYSITELIB}/Bio/PDB/Atom.pyo
+${PYSITELIB}/Bio/PDB/Chain.py
+${PYSITELIB}/Bio/PDB/Chain.pyc
+${PYSITELIB}/Bio/PDB/Chain.pyo
+${PYSITELIB}/Bio/PDB/DSSP.py
+${PYSITELIB}/Bio/PDB/DSSP.pyc
+${PYSITELIB}/Bio/PDB/DSSP.pyo
+${PYSITELIB}/Bio/PDB/Dice.py
+${PYSITELIB}/Bio/PDB/Dice.pyc
+${PYSITELIB}/Bio/PDB/Dice.pyo
+${PYSITELIB}/Bio/PDB/Entity.py
+${PYSITELIB}/Bio/PDB/Entity.pyc
+${PYSITELIB}/Bio/PDB/Entity.pyo
+${PYSITELIB}/Bio/PDB/FragmentMapper.py
+${PYSITELIB}/Bio/PDB/FragmentMapper.pyc
+${PYSITELIB}/Bio/PDB/FragmentMapper.pyo
+${PYSITELIB}/Bio/PDB/HSExposure.py
+${PYSITELIB}/Bio/PDB/HSExposure.pyc
+${PYSITELIB}/Bio/PDB/HSExposure.pyo
+${PYSITELIB}/Bio/PDB/MMCIF2Dict.py
+${PYSITELIB}/Bio/PDB/MMCIF2Dict.pyc
+${PYSITELIB}/Bio/PDB/MMCIF2Dict.pyo
+${PYSITELIB}/Bio/PDB/MMCIFParser.py
+${PYSITELIB}/Bio/PDB/MMCIFParser.pyc
+${PYSITELIB}/Bio/PDB/MMCIFParser.pyo
+${PYSITELIB}/Bio/PDB/Model.py
+${PYSITELIB}/Bio/PDB/Model.pyc
+${PYSITELIB}/Bio/PDB/Model.pyo
+${PYSITELIB}/Bio/PDB/NACCESS.py
+${PYSITELIB}/Bio/PDB/NACCESS.pyc
+${PYSITELIB}/Bio/PDB/NACCESS.pyo
+${PYSITELIB}/Bio/PDB/NeighborSearch.py
+${PYSITELIB}/Bio/PDB/NeighborSearch.pyc
+${PYSITELIB}/Bio/PDB/NeighborSearch.pyo
+${PYSITELIB}/Bio/PDB/PDBExceptions.py
+${PYSITELIB}/Bio/PDB/PDBExceptions.pyc
+${PYSITELIB}/Bio/PDB/PDBExceptions.pyo
+${PYSITELIB}/Bio/PDB/PDBIO.py
+${PYSITELIB}/Bio/PDB/PDBIO.pyc
+${PYSITELIB}/Bio/PDB/PDBIO.pyo
+${PYSITELIB}/Bio/PDB/PDBList.py
+${PYSITELIB}/Bio/PDB/PDBList.pyc
+${PYSITELIB}/Bio/PDB/PDBList.pyo
+${PYSITELIB}/Bio/PDB/PDBParser.py
+${PYSITELIB}/Bio/PDB/PDBParser.pyc
+${PYSITELIB}/Bio/PDB/PDBParser.pyo
+${PYSITELIB}/Bio/PDB/PSEA.py
+${PYSITELIB}/Bio/PDB/PSEA.pyc
+${PYSITELIB}/Bio/PDB/PSEA.pyo
+${PYSITELIB}/Bio/PDB/Polypeptide.py
+${PYSITELIB}/Bio/PDB/Polypeptide.pyc
+${PYSITELIB}/Bio/PDB/Polypeptide.pyo
+${PYSITELIB}/Bio/PDB/QCPSuperimposer/__init__.py
+${PYSITELIB}/Bio/PDB/QCPSuperimposer/__init__.pyc
+${PYSITELIB}/Bio/PDB/QCPSuperimposer/__init__.pyo
+${PYSITELIB}/Bio/PDB/QCPSuperimposer/qcprotmodule.c
+${PYSITELIB}/Bio/PDB/QCPSuperimposer/qcprotmodule.so
+${PYSITELIB}/Bio/PDB/Residue.py
+${PYSITELIB}/Bio/PDB/Residue.pyc
+${PYSITELIB}/Bio/PDB/Residue.pyo
+${PYSITELIB}/Bio/PDB/ResidueDepth.py
+${PYSITELIB}/Bio/PDB/ResidueDepth.pyc
+${PYSITELIB}/Bio/PDB/ResidueDepth.pyo
+${PYSITELIB}/Bio/PDB/Selection.py
+${PYSITELIB}/Bio/PDB/Selection.pyc
+${PYSITELIB}/Bio/PDB/Selection.pyo
+${PYSITELIB}/Bio/PDB/Structure.py
+${PYSITELIB}/Bio/PDB/Structure.pyc
+${PYSITELIB}/Bio/PDB/Structure.pyo
+${PYSITELIB}/Bio/PDB/StructureAlignment.py
+${PYSITELIB}/Bio/PDB/StructureAlignment.pyc
+${PYSITELIB}/Bio/PDB/StructureAlignment.pyo
+${PYSITELIB}/Bio/PDB/StructureBuilder.py
+${PYSITELIB}/Bio/PDB/StructureBuilder.pyc
+${PYSITELIB}/Bio/PDB/StructureBuilder.pyo
+${PYSITELIB}/Bio/PDB/Superimposer.py
+${PYSITELIB}/Bio/PDB/Superimposer.pyc
+${PYSITELIB}/Bio/PDB/Superimposer.pyo
+${PYSITELIB}/Bio/PDB/__init__.py
+${PYSITELIB}/Bio/PDB/__init__.pyc
+${PYSITELIB}/Bio/PDB/__init__.pyo
+${PYSITELIB}/Bio/PDB/kdtrees.c
+${PYSITELIB}/Bio/PDB/kdtrees.so
+${PYSITELIB}/Bio/PDB/mmcifio.py
+${PYSITELIB}/Bio/PDB/mmcifio.pyc
+${PYSITELIB}/Bio/PDB/mmcifio.pyo
+${PYSITELIB}/Bio/PDB/mmtf/DefaultParser.py
+${PYSITELIB}/Bio/PDB/mmtf/DefaultParser.pyc
+${PYSITELIB}/Bio/PDB/mmtf/DefaultParser.pyo
+${PYSITELIB}/Bio/PDB/mmtf/__init__.py
+${PYSITELIB}/Bio/PDB/mmtf/__init__.pyc
+${PYSITELIB}/Bio/PDB/mmtf/__init__.pyo
+${PYSITELIB}/Bio/PDB/parse_pdb_header.py
+${PYSITELIB}/Bio/PDB/parse_pdb_header.pyc
+${PYSITELIB}/Bio/PDB/parse_pdb_header.pyo
+${PYSITELIB}/Bio/PDB/vectors.py
+${PYSITELIB}/Bio/PDB/vectors.pyc
+${PYSITELIB}/Bio/PDB/vectors.pyo
+${PYSITELIB}/Bio/Pathway/Rep/Graph.py
+${PYSITELIB}/Bio/Pathway/Rep/Graph.pyc
+${PYSITELIB}/Bio/Pathway/Rep/Graph.pyo
+${PYSITELIB}/Bio/Pathway/Rep/MultiGraph.py
+${PYSITELIB}/Bio/Pathway/Rep/MultiGraph.pyc
+${PYSITELIB}/Bio/Pathway/Rep/MultiGraph.pyo
+${PYSITELIB}/Bio/Pathway/Rep/__init__.py
+${PYSITELIB}/Bio/Pathway/Rep/__init__.pyc
+${PYSITELIB}/Bio/Pathway/Rep/__init__.pyo
+${PYSITELIB}/Bio/Pathway/__init__.py
+${PYSITELIB}/Bio/Pathway/__init__.pyc
+${PYSITELIB}/Bio/Pathway/__init__.pyo
+${PYSITELIB}/Bio/Phylo/Applications/_Fasttree.py
+${PYSITELIB}/Bio/Phylo/Applications/_Fasttree.pyc
+${PYSITELIB}/Bio/Phylo/Applications/_Fasttree.pyo
+${PYSITELIB}/Bio/Phylo/Applications/_Phyml.py
+${PYSITELIB}/Bio/Phylo/Applications/_Phyml.pyc
+${PYSITELIB}/Bio/Phylo/Applications/_Phyml.pyo
+${PYSITELIB}/Bio/Phylo/Applications/_Raxml.py
+${PYSITELIB}/Bio/Phylo/Applications/_Raxml.pyc
+${PYSITELIB}/Bio/Phylo/Applications/_Raxml.pyo
+${PYSITELIB}/Bio/Phylo/Applications/__init__.py
+${PYSITELIB}/Bio/Phylo/Applications/__init__.pyc
+${PYSITELIB}/Bio/Phylo/Applications/__init__.pyo
+${PYSITELIB}/Bio/Phylo/BaseTree.py
+${PYSITELIB}/Bio/Phylo/BaseTree.pyc
+${PYSITELIB}/Bio/Phylo/BaseTree.pyo
+${PYSITELIB}/Bio/Phylo/CDAO.py
+${PYSITELIB}/Bio/Phylo/CDAO.pyc
+${PYSITELIB}/Bio/Phylo/CDAO.pyo
+${PYSITELIB}/Bio/Phylo/CDAOIO.py
+${PYSITELIB}/Bio/Phylo/CDAOIO.pyc
+${PYSITELIB}/Bio/Phylo/CDAOIO.pyo
+${PYSITELIB}/Bio/Phylo/Consensus.py
+${PYSITELIB}/Bio/Phylo/Consensus.pyc
+${PYSITELIB}/Bio/Phylo/Consensus.pyo
+${PYSITELIB}/Bio/Phylo/NeXML.py
+${PYSITELIB}/Bio/Phylo/NeXML.pyc
+${PYSITELIB}/Bio/Phylo/NeXML.pyo
+${PYSITELIB}/Bio/Phylo/NeXMLIO.py
+${PYSITELIB}/Bio/Phylo/NeXMLIO.pyc
+${PYSITELIB}/Bio/Phylo/NeXMLIO.pyo
+${PYSITELIB}/Bio/Phylo/Newick.py
+${PYSITELIB}/Bio/Phylo/Newick.pyc
+${PYSITELIB}/Bio/Phylo/Newick.pyo
+${PYSITELIB}/Bio/Phylo/NewickIO.py
+${PYSITELIB}/Bio/Phylo/NewickIO.pyc
+${PYSITELIB}/Bio/Phylo/NewickIO.pyo
+${PYSITELIB}/Bio/Phylo/NexusIO.py
+${PYSITELIB}/Bio/Phylo/NexusIO.pyc
+${PYSITELIB}/Bio/Phylo/NexusIO.pyo
+${PYSITELIB}/Bio/Phylo/PAML/__init__.py
+${PYSITELIB}/Bio/Phylo/PAML/__init__.pyc
+${PYSITELIB}/Bio/Phylo/PAML/__init__.pyo
+${PYSITELIB}/Bio/Phylo/PAML/_paml.py
+${PYSITELIB}/Bio/Phylo/PAML/_paml.pyc
+${PYSITELIB}/Bio/Phylo/PAML/_paml.pyo
+${PYSITELIB}/Bio/Phylo/PAML/_parse_baseml.py
+${PYSITELIB}/Bio/Phylo/PAML/_parse_baseml.pyc
+${PYSITELIB}/Bio/Phylo/PAML/_parse_baseml.pyo
+${PYSITELIB}/Bio/Phylo/PAML/_parse_codeml.py
+${PYSITELIB}/Bio/Phylo/PAML/_parse_codeml.pyc
+${PYSITELIB}/Bio/Phylo/PAML/_parse_codeml.pyo
+${PYSITELIB}/Bio/Phylo/PAML/_parse_yn00.py
+${PYSITELIB}/Bio/Phylo/PAML/_parse_yn00.pyc
+${PYSITELIB}/Bio/Phylo/PAML/_parse_yn00.pyo
+${PYSITELIB}/Bio/Phylo/PAML/baseml.py
+${PYSITELIB}/Bio/Phylo/PAML/baseml.pyc
+${PYSITELIB}/Bio/Phylo/PAML/baseml.pyo
+${PYSITELIB}/Bio/Phylo/PAML/chi2.py
+${PYSITELIB}/Bio/Phylo/PAML/chi2.pyc
+${PYSITELIB}/Bio/Phylo/PAML/chi2.pyo
+${PYSITELIB}/Bio/Phylo/PAML/codeml.py
+${PYSITELIB}/Bio/Phylo/PAML/codeml.pyc
+${PYSITELIB}/Bio/Phylo/PAML/codeml.pyo
+${PYSITELIB}/Bio/Phylo/PAML/yn00.py
+${PYSITELIB}/Bio/Phylo/PAML/yn00.pyc
+${PYSITELIB}/Bio/Phylo/PAML/yn00.pyo
+${PYSITELIB}/Bio/Phylo/PhyloXML.py
+${PYSITELIB}/Bio/Phylo/PhyloXML.pyc
+${PYSITELIB}/Bio/Phylo/PhyloXML.pyo
+${PYSITELIB}/Bio/Phylo/PhyloXMLIO.py
+${PYSITELIB}/Bio/Phylo/PhyloXMLIO.pyc
+${PYSITELIB}/Bio/Phylo/PhyloXMLIO.pyo
+${PYSITELIB}/Bio/Phylo/TreeConstruction.py
+${PYSITELIB}/Bio/Phylo/TreeConstruction.pyc
+${PYSITELIB}/Bio/Phylo/TreeConstruction.pyo
+${PYSITELIB}/Bio/Phylo/__init__.py
+${PYSITELIB}/Bio/Phylo/__init__.pyc
+${PYSITELIB}/Bio/Phylo/__init__.pyo
+${PYSITELIB}/Bio/Phylo/_cdao_owl.py
+${PYSITELIB}/Bio/Phylo/_cdao_owl.pyc
+${PYSITELIB}/Bio/Phylo/_cdao_owl.pyo
+${PYSITELIB}/Bio/Phylo/_io.py
+${PYSITELIB}/Bio/Phylo/_io.pyc
+${PYSITELIB}/Bio/Phylo/_io.pyo
+${PYSITELIB}/Bio/Phylo/_utils.py
+${PYSITELIB}/Bio/Phylo/_utils.pyc
+${PYSITELIB}/Bio/Phylo/_utils.pyo
+${PYSITELIB}/Bio/PopGen/GenePop/Controller.py
+${PYSITELIB}/Bio/PopGen/GenePop/Controller.pyc
+${PYSITELIB}/Bio/PopGen/GenePop/Controller.pyo
+${PYSITELIB}/Bio/PopGen/GenePop/EasyController.py
+${PYSITELIB}/Bio/PopGen/GenePop/EasyController.pyc
+${PYSITELIB}/Bio/PopGen/GenePop/EasyController.pyo
+${PYSITELIB}/Bio/PopGen/GenePop/FileParser.py
+${PYSITELIB}/Bio/PopGen/GenePop/FileParser.pyc
+${PYSITELIB}/Bio/PopGen/GenePop/FileParser.pyo
+${PYSITELIB}/Bio/PopGen/GenePop/LargeFileParser.py
+${PYSITELIB}/Bio/PopGen/GenePop/LargeFileParser.pyc
+${PYSITELIB}/Bio/PopGen/GenePop/LargeFileParser.pyo
+${PYSITELIB}/Bio/PopGen/GenePop/Utils.py
+${PYSITELIB}/Bio/PopGen/GenePop/Utils.pyc
+${PYSITELIB}/Bio/PopGen/GenePop/Utils.pyo
+${PYSITELIB}/Bio/PopGen/GenePop/__init__.py
+${PYSITELIB}/Bio/PopGen/GenePop/__init__.pyc
+${PYSITELIB}/Bio/PopGen/GenePop/__init__.pyo
+${PYSITELIB}/Bio/PopGen/__init__.py
+${PYSITELIB}/Bio/PopGen/__init__.pyc
+${PYSITELIB}/Bio/PopGen/__init__.pyo
+${PYSITELIB}/Bio/Restriction/PrintFormat.py
+${PYSITELIB}/Bio/Restriction/PrintFormat.pyc
+${PYSITELIB}/Bio/Restriction/PrintFormat.pyo
+${PYSITELIB}/Bio/Restriction/Restriction.py
+${PYSITELIB}/Bio/Restriction/Restriction.pyc
+${PYSITELIB}/Bio/Restriction/Restriction.pyo
+${PYSITELIB}/Bio/Restriction/Restriction_Dictionary.py
+${PYSITELIB}/Bio/Restriction/Restriction_Dictionary.pyc
+${PYSITELIB}/Bio/Restriction/Restriction_Dictionary.pyo
+${PYSITELIB}/Bio/Restriction/__init__.py
+${PYSITELIB}/Bio/Restriction/__init__.pyc
+${PYSITELIB}/Bio/Restriction/__init__.pyo
+${PYSITELIB}/Bio/SCOP/Cla.py
+${PYSITELIB}/Bio/SCOP/Cla.pyc
+${PYSITELIB}/Bio/SCOP/Cla.pyo
+${PYSITELIB}/Bio/SCOP/Des.py
+${PYSITELIB}/Bio/SCOP/Des.pyc
+${PYSITELIB}/Bio/SCOP/Des.pyo
+${PYSITELIB}/Bio/SCOP/Dom.py
+${PYSITELIB}/Bio/SCOP/Dom.pyc
+${PYSITELIB}/Bio/SCOP/Dom.pyo
+${PYSITELIB}/Bio/SCOP/Hie.py
+${PYSITELIB}/Bio/SCOP/Hie.pyc
+${PYSITELIB}/Bio/SCOP/Hie.pyo
+${PYSITELIB}/Bio/SCOP/Raf.py
+${PYSITELIB}/Bio/SCOP/Raf.pyc
+${PYSITELIB}/Bio/SCOP/Raf.pyo
+${PYSITELIB}/Bio/SCOP/Residues.py
+${PYSITELIB}/Bio/SCOP/Residues.pyc
+${PYSITELIB}/Bio/SCOP/Residues.pyo
+${PYSITELIB}/Bio/SCOP/__init__.py
+${PYSITELIB}/Bio/SCOP/__init__.pyc
+${PYSITELIB}/Bio/SCOP/__init__.pyo
+${PYSITELIB}/Bio/SVDSuperimposer/__init__.py
+${PYSITELIB}/Bio/SVDSuperimposer/__init__.pyc
+${PYSITELIB}/Bio/SVDSuperimposer/__init__.pyo
+${PYSITELIB}/Bio/SearchIO/BlastIO/__init__.py
+${PYSITELIB}/Bio/SearchIO/BlastIO/__init__.pyc
+${PYSITELIB}/Bio/SearchIO/BlastIO/__init__.pyo
+${PYSITELIB}/Bio/SearchIO/BlastIO/blast_tab.py
+${PYSITELIB}/Bio/SearchIO/BlastIO/blast_tab.pyc
+${PYSITELIB}/Bio/SearchIO/BlastIO/blast_tab.pyo
+${PYSITELIB}/Bio/SearchIO/BlastIO/blast_text.py
+${PYSITELIB}/Bio/SearchIO/BlastIO/blast_text.pyc
+${PYSITELIB}/Bio/SearchIO/BlastIO/blast_text.pyo
+${PYSITELIB}/Bio/SearchIO/BlastIO/blast_xml.py
+${PYSITELIB}/Bio/SearchIO/BlastIO/blast_xml.pyc
+${PYSITELIB}/Bio/SearchIO/BlastIO/blast_xml.pyo
+${PYSITELIB}/Bio/SearchIO/BlatIO.py
+${PYSITELIB}/Bio/SearchIO/BlatIO.pyc
+${PYSITELIB}/Bio/SearchIO/BlatIO.pyo
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/__init__.py
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/__init__.pyc
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/__init__.pyo
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/_base.py
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/_base.pyc
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/_base.pyo
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/exonerate_cigar.py
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/exonerate_cigar.pyc
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/exonerate_cigar.pyo
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/exonerate_text.py
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/exonerate_text.pyc
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/exonerate_text.pyo
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/exonerate_vulgar.pyc
+${PYSITELIB}/Bio/SearchIO/ExonerateIO/exonerate_vulgar.pyo
+${PYSITELIB}/Bio/SearchIO/FastaIO.py
+${PYSITELIB}/Bio/SearchIO/FastaIO.pyc
+${PYSITELIB}/Bio/SearchIO/FastaIO.pyo
+${PYSITELIB}/Bio/SearchIO/HHsuiteIO/__init__.py
+${PYSITELIB}/Bio/SearchIO/HHsuiteIO/__init__.pyc
+${PYSITELIB}/Bio/SearchIO/HHsuiteIO/__init__.pyo
+${PYSITELIB}/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py
+${PYSITELIB}/Bio/SearchIO/HHsuiteIO/hhsuite2_text.pyc
+${PYSITELIB}/Bio/SearchIO/HHsuiteIO/hhsuite2_text.pyo
+${PYSITELIB}/Bio/SearchIO/HmmerIO/__init__.py
+${PYSITELIB}/Bio/SearchIO/HmmerIO/__init__.pyc
+${PYSITELIB}/Bio/SearchIO/HmmerIO/__init__.pyo
+${PYSITELIB}/Bio/SearchIO/HmmerIO/_base.py
+${PYSITELIB}/Bio/SearchIO/HmmerIO/_base.pyc
+${PYSITELIB}/Bio/SearchIO/HmmerIO/_base.pyo
+${PYSITELIB}/Bio/SearchIO/HmmerIO/hmmer2_text.py
+${PYSITELIB}/Bio/SearchIO/HmmerIO/hmmer2_text.pyc
+${PYSITELIB}/Bio/SearchIO/HmmerIO/hmmer2_text.pyo
+${PYSITELIB}/Bio/SearchIO/HmmerIO/hmmer3_domtab.py
+${PYSITELIB}/Bio/SearchIO/HmmerIO/hmmer3_domtab.pyc
+${PYSITELIB}/Bio/SearchIO/HmmerIO/hmmer3_domtab.pyo
+${PYSITELIB}/Bio/SearchIO/HmmerIO/hmmer3_tab.py
+${PYSITELIB}/Bio/SearchIO/HmmerIO/hmmer3_tab.pyc
+${PYSITELIB}/Bio/SearchIO/HmmerIO/hmmer3_tab.pyo
+${PYSITELIB}/Bio/SearchIO/HmmerIO/hmmer3_text.py
+${PYSITELIB}/Bio/SearchIO/HmmerIO/hmmer3_text.pyc
+${PYSITELIB}/Bio/SearchIO/HmmerIO/hmmer3_text.pyo
+${PYSITELIB}/Bio/SearchIO/InterproscanIO/__init__.py
+${PYSITELIB}/Bio/SearchIO/InterproscanIO/__init__.pyc
+${PYSITELIB}/Bio/SearchIO/InterproscanIO/__init__.pyo
+${PYSITELIB}/Bio/SearchIO/InterproscanIO/interproscan_xml.py
+${PYSITELIB}/Bio/SearchIO/InterproscanIO/interproscan_xml.pyc
+${PYSITELIB}/Bio/SearchIO/InterproscanIO/interproscan_xml.pyo
+${PYSITELIB}/Bio/SearchIO/__init__.py
+${PYSITELIB}/Bio/SearchIO/__init__.pyc
+${PYSITELIB}/Bio/SearchIO/__init__.pyo
+${PYSITELIB}/Bio/SearchIO/_index.py
+${PYSITELIB}/Bio/SearchIO/_index.pyc
+${PYSITELIB}/Bio/SearchIO/_index.pyo
+${PYSITELIB}/Bio/SearchIO/_legacy/NCBIStandalone.py
+${PYSITELIB}/Bio/SearchIO/_legacy/NCBIStandalone.pyc
+${PYSITELIB}/Bio/SearchIO/_legacy/NCBIStandalone.pyo
+${PYSITELIB}/Bio/SearchIO/_legacy/ParserSupport.py
+${PYSITELIB}/Bio/SearchIO/_legacy/ParserSupport.pyc
+${PYSITELIB}/Bio/SearchIO/_legacy/ParserSupport.pyo
+${PYSITELIB}/Bio/SearchIO/_legacy/__init__.py
+${PYSITELIB}/Bio/SearchIO/_legacy/__init__.pyc
+${PYSITELIB}/Bio/SearchIO/_legacy/__init__.pyo
+${PYSITELIB}/Bio/SearchIO/_model/__init__.py
+${PYSITELIB}/Bio/SearchIO/_model/__init__.pyc
+${PYSITELIB}/Bio/SearchIO/_model/__init__.pyo
+${PYSITELIB}/Bio/SearchIO/_model/_base.py
+${PYSITELIB}/Bio/SearchIO/_model/_base.pyc
+${PYSITELIB}/Bio/SearchIO/_model/_base.pyo
+${PYSITELIB}/Bio/SearchIO/_model/hit.py
+${PYSITELIB}/Bio/SearchIO/_model/hit.pyc
+${PYSITELIB}/Bio/SearchIO/_model/hit.pyo
+${PYSITELIB}/Bio/SearchIO/_model/hsp.py
+${PYSITELIB}/Bio/SearchIO/_model/hsp.pyc
+${PYSITELIB}/Bio/SearchIO/_model/hsp.pyo
+${PYSITELIB}/Bio/SearchIO/_model/query.py
+${PYSITELIB}/Bio/SearchIO/_model/query.pyc
+${PYSITELIB}/Bio/SearchIO/_model/query.pyo
+${PYSITELIB}/Bio/SearchIO/_utils.py
+${PYSITELIB}/Bio/SearchIO/_utils.pyc
+${PYSITELIB}/Bio/SearchIO/_utils.pyo
+${PYSITELIB}/Bio/Seq.py
+${PYSITELIB}/Bio/Seq.pyc
+${PYSITELIB}/Bio/Seq.pyo
+${PYSITELIB}/Bio/SeqFeature.py
+${PYSITELIB}/Bio/SeqFeature.pyc
+${PYSITELIB}/Bio/SeqFeature.pyo
+${PYSITELIB}/Bio/SeqIO/AbiIO.py
+${PYSITELIB}/Bio/SeqIO/AbiIO.pyc
+${PYSITELIB}/Bio/SeqIO/AbiIO.pyo
+${PYSITELIB}/Bio/SeqIO/AceIO.py
+${PYSITELIB}/Bio/SeqIO/AceIO.pyc
+${PYSITELIB}/Bio/SeqIO/AceIO.pyo
+${PYSITELIB}/Bio/SeqIO/FastaIO.py
+${PYSITELIB}/Bio/SeqIO/FastaIO.pyc
+${PYSITELIB}/Bio/SeqIO/FastaIO.pyo
+${PYSITELIB}/Bio/SeqIO/IgIO.py
+${PYSITELIB}/Bio/SeqIO/IgIO.pyc
+${PYSITELIB}/Bio/SeqIO/IgIO.pyo
+${PYSITELIB}/Bio/SeqIO/InsdcIO.py
+${PYSITELIB}/Bio/SeqIO/InsdcIO.pyc
+${PYSITELIB}/Bio/SeqIO/InsdcIO.pyo
+${PYSITELIB}/Bio/SeqIO/Interfaces.py
+${PYSITELIB}/Bio/SeqIO/Interfaces.pyc
+${PYSITELIB}/Bio/SeqIO/Interfaces.pyo
+${PYSITELIB}/Bio/SeqIO/NibIO.py
+${PYSITELIB}/Bio/SeqIO/NibIO.pyc
+${PYSITELIB}/Bio/SeqIO/NibIO.pyo
+${PYSITELIB}/Bio/SeqIO/PdbIO.py
+${PYSITELIB}/Bio/SeqIO/PdbIO.pyc
+${PYSITELIB}/Bio/SeqIO/PdbIO.pyo
+${PYSITELIB}/Bio/SeqIO/PhdIO.py
+${PYSITELIB}/Bio/SeqIO/PhdIO.pyc
+${PYSITELIB}/Bio/SeqIO/PhdIO.pyo
+${PYSITELIB}/Bio/SeqIO/PirIO.py
+${PYSITELIB}/Bio/SeqIO/PirIO.pyc
+${PYSITELIB}/Bio/SeqIO/PirIO.pyo
+${PYSITELIB}/Bio/SeqIO/QualityIO.py
+${PYSITELIB}/Bio/SeqIO/QualityIO.pyc
+${PYSITELIB}/Bio/SeqIO/QualityIO.pyo
+${PYSITELIB}/Bio/SeqIO/SeqXmlIO.py
+${PYSITELIB}/Bio/SeqIO/SeqXmlIO.pyc
+${PYSITELIB}/Bio/SeqIO/SeqXmlIO.pyo
+${PYSITELIB}/Bio/SeqIO/SffIO.py
+${PYSITELIB}/Bio/SeqIO/SffIO.pyc
+${PYSITELIB}/Bio/SeqIO/SffIO.pyo
+${PYSITELIB}/Bio/SeqIO/SwissIO.py
+${PYSITELIB}/Bio/SeqIO/SwissIO.pyc
+${PYSITELIB}/Bio/SeqIO/SwissIO.pyo
+${PYSITELIB}/Bio/SeqIO/TabIO.py
+${PYSITELIB}/Bio/SeqIO/TabIO.pyc
+${PYSITELIB}/Bio/SeqIO/TabIO.pyo
+${PYSITELIB}/Bio/SeqIO/UniprotIO.py
+${PYSITELIB}/Bio/SeqIO/UniprotIO.pyc
+${PYSITELIB}/Bio/SeqIO/UniprotIO.pyo
+${PYSITELIB}/Bio/SeqIO/__init__.py
+${PYSITELIB}/Bio/SeqIO/__init__.pyc
+${PYSITELIB}/Bio/SeqIO/__init__.pyo
+${PYSITELIB}/Bio/SeqIO/_convert.py
+${PYSITELIB}/Bio/SeqIO/_convert.pyc
+${PYSITELIB}/Bio/SeqIO/_convert.pyo
+${PYSITELIB}/Bio/SeqIO/_index.py
+${PYSITELIB}/Bio/SeqIO/_index.pyc
+${PYSITELIB}/Bio/SeqIO/_index.pyo
+${PYSITELIB}/Bio/SeqRecord.py
+${PYSITELIB}/Bio/SeqRecord.pyc
+${PYSITELIB}/Bio/SeqRecord.pyo
+${PYSITELIB}/Bio/SeqUtils/CheckSum.py
+${PYSITELIB}/Bio/SeqUtils/CheckSum.pyc
+${PYSITELIB}/Bio/SeqUtils/CheckSum.pyo
+${PYSITELIB}/Bio/SeqUtils/CodonUsage.py
+${PYSITELIB}/Bio/SeqUtils/CodonUsage.pyc
+${PYSITELIB}/Bio/SeqUtils/CodonUsage.pyo
+${PYSITELIB}/Bio/SeqUtils/CodonUsageIndices.py
+${PYSITELIB}/Bio/SeqUtils/CodonUsageIndices.pyc
+${PYSITELIB}/Bio/SeqUtils/CodonUsageIndices.pyo
+${PYSITELIB}/Bio/SeqUtils/IsoelectricPoint.py
+${PYSITELIB}/Bio/SeqUtils/IsoelectricPoint.pyc
+${PYSITELIB}/Bio/SeqUtils/IsoelectricPoint.pyo
+${PYSITELIB}/Bio/SeqUtils/MeltingTemp.py
+${PYSITELIB}/Bio/SeqUtils/MeltingTemp.pyc
+${PYSITELIB}/Bio/SeqUtils/MeltingTemp.pyo
+${PYSITELIB}/Bio/SeqUtils/ProtParam.py
+${PYSITELIB}/Bio/SeqUtils/ProtParam.pyc
+${PYSITELIB}/Bio/SeqUtils/ProtParam.pyo
+${PYSITELIB}/Bio/SeqUtils/ProtParamData.py
+${PYSITELIB}/Bio/SeqUtils/ProtParamData.pyc
+${PYSITELIB}/Bio/SeqUtils/ProtParamData.pyo
+${PYSITELIB}/Bio/SeqUtils/__init__.py
+${PYSITELIB}/Bio/SeqUtils/__init__.pyc
+${PYSITELIB}/Bio/SeqUtils/__init__.pyo
+${PYSITELIB}/Bio/SeqUtils/lcc.py
+${PYSITELIB}/Bio/SeqUtils/lcc.pyc
+${PYSITELIB}/Bio/SeqUtils/lcc.pyo
+${PYSITELIB}/Bio/Sequencing/Ace.py
+${PYSITELIB}/Bio/Sequencing/Ace.pyc
+${PYSITELIB}/Bio/Sequencing/Ace.pyo
+${PYSITELIB}/Bio/Sequencing/Applications/_Novoalign.py
+${PYSITELIB}/Bio/Sequencing/Applications/_Novoalign.pyc
+${PYSITELIB}/Bio/Sequencing/Applications/_Novoalign.pyo
+${PYSITELIB}/Bio/Sequencing/Applications/__init__.py
+${PYSITELIB}/Bio/Sequencing/Applications/__init__.pyc
+${PYSITELIB}/Bio/Sequencing/Applications/__init__.pyo
+${PYSITELIB}/Bio/Sequencing/Applications/_bwa.py
+${PYSITELIB}/Bio/Sequencing/Applications/_bwa.pyc
+${PYSITELIB}/Bio/Sequencing/Applications/_bwa.pyo
+${PYSITELIB}/Bio/Sequencing/Applications/_samtools.py
+${PYSITELIB}/Bio/Sequencing/Applications/_samtools.pyc
+${PYSITELIB}/Bio/Sequencing/Applications/_samtools.pyo
+${PYSITELIB}/Bio/Sequencing/Phd.py
+${PYSITELIB}/Bio/Sequencing/Phd.pyc
+${PYSITELIB}/Bio/Sequencing/Phd.pyo
+${PYSITELIB}/Bio/Sequencing/__init__.py
+${PYSITELIB}/Bio/Sequencing/__init__.pyc
+${PYSITELIB}/Bio/Sequencing/__init__.pyo
+${PYSITELIB}/Bio/Statistics/__init__.py
+${PYSITELIB}/Bio/Statistics/__init__.pyc
+${PYSITELIB}/Bio/Statistics/__init__.pyo
+${PYSITELIB}/Bio/Statistics/lowess.py
+${PYSITELIB}/Bio/Statistics/lowess.pyc
+${PYSITELIB}/Bio/Statistics/lowess.pyo
+${PYSITELIB}/Bio/SubsMat/FreqTable.py
+${PYSITELIB}/Bio/SubsMat/FreqTable.pyc
+${PYSITELIB}/Bio/SubsMat/FreqTable.pyo
+${PYSITELIB}/Bio/SubsMat/MatrixInfo.py
+${PYSITELIB}/Bio/SubsMat/MatrixInfo.pyc
+${PYSITELIB}/Bio/SubsMat/MatrixInfo.pyo
+${PYSITELIB}/Bio/SubsMat/__init__.py
+${PYSITELIB}/Bio/SubsMat/__init__.pyc
+${PYSITELIB}/Bio/SubsMat/__init__.pyo
+${PYSITELIB}/Bio/SwissProt/KeyWList.py
+${PYSITELIB}/Bio/SwissProt/KeyWList.pyc
+${PYSITELIB}/Bio/SwissProt/KeyWList.pyo
+${PYSITELIB}/Bio/SwissProt/__init__.py
+${PYSITELIB}/Bio/SwissProt/__init__.pyc
+${PYSITELIB}/Bio/SwissProt/__init__.pyo
+${PYSITELIB}/Bio/TogoWS/__init__.py
+${PYSITELIB}/Bio/TogoWS/__init__.pyc
+${PYSITELIB}/Bio/TogoWS/__init__.pyo
+${PYSITELIB}/Bio/UniGene/__init__.py
+${PYSITELIB}/Bio/UniGene/__init__.pyc
+${PYSITELIB}/Bio/UniGene/__init__.pyo
+${PYSITELIB}/Bio/UniProt/GOA.py
+${PYSITELIB}/Bio/UniProt/GOA.pyc
+${PYSITELIB}/Bio/UniProt/GOA.pyo
+${PYSITELIB}/Bio/UniProt/__init__.py
+${PYSITELIB}/Bio/UniProt/__init__.pyc
+${PYSITELIB}/Bio/UniProt/__init__.pyo
+${PYSITELIB}/Bio/Wise/__init__.py
+${PYSITELIB}/Bio/Wise/__init__.pyc
+${PYSITELIB}/Bio/Wise/__init__.pyo
+${PYSITELIB}/Bio/Wise/dnal.py
+${PYSITELIB}/Bio/Wise/dnal.pyc
+${PYSITELIB}/Bio/Wise/dnal.pyo
+${PYSITELIB}/Bio/Wise/psw.py
+${PYSITELIB}/Bio/Wise/psw.pyc
+${PYSITELIB}/Bio/Wise/psw.pyo
+${PYSITELIB}/Bio/__init__.py
+${PYSITELIB}/Bio/__init__.pyc
+${PYSITELIB}/Bio/__init__.pyo
+${PYSITELIB}/Bio/_py3k/__init__.py
+${PYSITELIB}/Bio/_py3k/__init__.pyc
+${PYSITELIB}/Bio/_py3k/__init__.pyo
+${PYSITELIB}/Bio/_utils.py
+${PYSITELIB}/Bio/_utils.pyc
+${PYSITELIB}/Bio/_utils.pyo
+${PYSITELIB}/Bio/bgzf.py
+${PYSITELIB}/Bio/bgzf.pyc
+${PYSITELIB}/Bio/bgzf.pyo
+${PYSITELIB}/Bio/codonalign/__init__.py
+${PYSITELIB}/Bio/codonalign/__init__.pyc
+${PYSITELIB}/Bio/codonalign/__init__.pyo
+${PYSITELIB}/Bio/codonalign/chisq.py
+${PYSITELIB}/Bio/codonalign/chisq.pyc
+${PYSITELIB}/Bio/codonalign/chisq.pyo
+${PYSITELIB}/Bio/codonalign/codonalignment.py
+${PYSITELIB}/Bio/codonalign/codonalignment.pyc
+${PYSITELIB}/Bio/codonalign/codonalignment.pyo
+${PYSITELIB}/Bio/codonalign/codonalphabet.py
+${PYSITELIB}/Bio/codonalign/codonalphabet.pyc
+${PYSITELIB}/Bio/codonalign/codonalphabet.pyo
+${PYSITELIB}/Bio/codonalign/codonseq.py
+${PYSITELIB}/Bio/codonalign/codonseq.pyc
+${PYSITELIB}/Bio/codonalign/codonseq.pyo
+${PYSITELIB}/Bio/cpairwise2.so
+${PYSITELIB}/Bio/cpairwise2module.c
+${PYSITELIB}/Bio/kNN.py
+${PYSITELIB}/Bio/kNN.pyc
+${PYSITELIB}/Bio/kNN.pyo
+${PYSITELIB}/Bio/motifs/__init__.py
+${PYSITELIB}/Bio/motifs/__init__.pyc
+${PYSITELIB}/Bio/motifs/__init__.pyo
+${PYSITELIB}/Bio/motifs/_pwm.c
+${PYSITELIB}/Bio/motifs/_pwm.so
+${PYSITELIB}/Bio/motifs/alignace.py
+${PYSITELIB}/Bio/motifs/alignace.pyc
+${PYSITELIB}/Bio/motifs/alignace.pyo
+${PYSITELIB}/Bio/motifs/applications/__init__.py
+${PYSITELIB}/Bio/motifs/applications/__init__.pyc
+${PYSITELIB}/Bio/motifs/applications/__init__.pyo
+${PYSITELIB}/Bio/motifs/applications/_xxmotif.py
+${PYSITELIB}/Bio/motifs/applications/_xxmotif.pyc
+${PYSITELIB}/Bio/motifs/applications/_xxmotif.pyo
+${PYSITELIB}/Bio/motifs/clusterbuster.py
+${PYSITELIB}/Bio/motifs/clusterbuster.pyc
+${PYSITELIB}/Bio/motifs/clusterbuster.pyo
+${PYSITELIB}/Bio/motifs/jaspar/__init__.py
+${PYSITELIB}/Bio/motifs/jaspar/__init__.pyc
+${PYSITELIB}/Bio/motifs/jaspar/__init__.pyo
+${PYSITELIB}/Bio/motifs/jaspar/db.py
+${PYSITELIB}/Bio/motifs/jaspar/db.pyc
+${PYSITELIB}/Bio/motifs/jaspar/db.pyo
+${PYSITELIB}/Bio/motifs/mast.py
+${PYSITELIB}/Bio/motifs/mast.pyc
+${PYSITELIB}/Bio/motifs/mast.pyo
+${PYSITELIB}/Bio/motifs/matrix.py
+${PYSITELIB}/Bio/motifs/matrix.pyc
+${PYSITELIB}/Bio/motifs/matrix.pyo
+${PYSITELIB}/Bio/motifs/meme.py
+${PYSITELIB}/Bio/motifs/meme.pyc
+${PYSITELIB}/Bio/motifs/meme.pyo
+${PYSITELIB}/Bio/motifs/minimal.py
+${PYSITELIB}/Bio/motifs/minimal.pyc
+${PYSITELIB}/Bio/motifs/minimal.pyo
+${PYSITELIB}/Bio/motifs/pfm.py
+${PYSITELIB}/Bio/motifs/pfm.pyc
+${PYSITELIB}/Bio/motifs/pfm.pyo
+${PYSITELIB}/Bio/motifs/thresholds.py
+${PYSITELIB}/Bio/motifs/thresholds.pyc
+${PYSITELIB}/Bio/motifs/thresholds.pyo
+${PYSITELIB}/Bio/motifs/transfac.py
+${PYSITELIB}/Bio/motifs/transfac.pyc
+${PYSITELIB}/Bio/motifs/transfac.pyo
+${PYSITELIB}/Bio/motifs/xms.py
+${PYSITELIB}/Bio/motifs/xms.pyc
+${PYSITELIB}/Bio/motifs/xms.pyo
+${PYSITELIB}/Bio/pairwise2.py
+${PYSITELIB}/Bio/pairwise2.pyc
+${PYSITELIB}/Bio/pairwise2.pyo
+${PYSITELIB}/Bio/phenotype/__init__.py
+${PYSITELIB}/Bio/phenotype/__init__.pyc
+${PYSITELIB}/Bio/phenotype/__init__.pyo
+${PYSITELIB}/Bio/phenotype/phen_micro.py
+${PYSITELIB}/Bio/phenotype/phen_micro.pyc
+${PYSITELIB}/Bio/phenotype/phen_micro.pyo
+${PYSITELIB}/Bio/phenotype/pm_fitting.py
+${PYSITELIB}/Bio/phenotype/pm_fitting.pyc
+${PYSITELIB}/Bio/phenotype/pm_fitting.pyo
+${PYSITELIB}/Bio/trie.c
+${PYSITELIB}/Bio/trie.h
+${PYSITELIB}/Bio/trie.so
+${PYSITELIB}/Bio/triefind.py
+${PYSITELIB}/Bio/triefind.pyc
+${PYSITELIB}/Bio/triefind.pyo
+${PYSITELIB}/Bio/triemodule.c
+${PYSITELIB}/BioSQL/BioSeq.py
+${PYSITELIB}/BioSQL/BioSeq.pyc
+${PYSITELIB}/BioSQL/BioSeq.pyo
+${PYSITELIB}/BioSQL/BioSeqDatabase.py
+${PYSITELIB}/BioSQL/BioSeqDatabase.pyc
+${PYSITELIB}/BioSQL/BioSeqDatabase.pyo
+${PYSITELIB}/BioSQL/DBUtils.py
+${PYSITELIB}/BioSQL/DBUtils.pyc
+${PYSITELIB}/BioSQL/DBUtils.pyo
+${PYSITELIB}/BioSQL/Loader.py
+${PYSITELIB}/BioSQL/Loader.pyc
+${PYSITELIB}/BioSQL/Loader.pyo
+${PYSITELIB}/BioSQL/__init__.py
+${PYSITELIB}/BioSQL/__init__.pyc
+${PYSITELIB}/BioSQL/__init__.pyo
+share/doc/biopython/README.rst
+share/doc/biopython/Tutorial.pdf
+share/examples/biopython/ACT_example.py
+share/examples/biopython/PF05371_seed.sth
+share/examples/biopython/Plates.csv
+share/examples/biopython/Proux_et_al_2002_Figure_6.py
+share/examples/biopython/alpha.faa
+share/examples/biopython/beta.faa
+share/examples/biopython/clustal_run.py
+share/examples/biopython/ec_5.4.2.2.txt
+share/examples/biopython/fasta_dictionary.py
+share/examples/biopython/fasta_iterator.py
+share/examples/biopython/getgene.py
+share/examples/biopython/ls_orchid.fasta
+share/examples/biopython/ls_orchid.gbk
+share/examples/biopython/ls_orchid.gbk.bgz
+share/examples/biopython/ls_orchid.gbk.bz2
+share/examples/biopython/ls_orchid.gbk.gz
+share/examples/biopython/m_cold.fasta
+share/examples/biopython/make_subsmat.py
+share/examples/biopython/my_blast.xml
+share/examples/biopython/my_blat.psl
+share/examples/biopython/nmr/noed.xpk
+share/examples/biopython/nmr/simplepredict.py
+share/examples/biopython/opuntia.aln
+share/examples/biopython/opuntia.dnd
+share/examples/biopython/opuntia.fasta
+share/examples/biopython/protein.aln
+share/examples/biopython/simple.dnd
+share/examples/biopython/swissprot.py
+share/examples/biopython/www_blast.py
Index: pkgsrc/biology/py-biopython/distinfo
diff -u /dev/null pkgsrc/biology/py-biopython/distinfo:1.1
--- /dev/null   Fri Aug  9 21:52:34 2019
+++ pkgsrc/biology/py-biopython/distinfo        Fri Aug  9 21:52:34 2019
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2019/08/09 21:52:34 brook Exp $
+
+SHA1 (biopython-1.74.tar.gz) = 75b6b7f6f70220c984bc55d63145fea21b84387b
+RMD160 (biopython-1.74.tar.gz) = c9b2130d895ecea30e37bdd71524ad7c6ea1db2d
+SHA512 (biopython-1.74.tar.gz) = a5611b993e383d76d2fdc9be22481624180748f06f107e603a062c51b7ca7cf8603d6d97e11d64cd011ae7bd2696c8bf3659b9c625c84c479164a6171d5e8415
+Size (biopython-1.74.tar.gz) = 16129257 bytes

Prev by Date: CVS commit: pkgsrc
Next by Date: CVS commit: pkgsrc/editors/xournal
Previous by Thread: CVS commit: pkgsrc
Next by Thread: CVS commit: pkgsrc/editors/xournal
Indexes:

Home | Main Index | Thread Index | Old Index